Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 2.4e-110 402.1 200 100.0
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 3.4e-104 381.7 200 96.0
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 4.3e-91 338.2 200 81.0
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 4.3e-91 338.2 200 81.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 4.3e-83 311.6 198 75.3
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 5.7e-83 311.2 200 77.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 7.4e-83 310.8 200 75.5
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 7.4e-83 310.8 201 74.1
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-82 310.1 200 75.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-82 310.1 200 75.5
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.6e-82 309.7 200 73.5
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.2e-82 309.3 201 73.6
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 6.3e-82 307.8 200 76.0
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 1.8e-81 306.2 200 73.5
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.4e-81 305.8 198 72.7
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 5.3e-81 304.7 200 75.0
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 9.1e-81 303.9 201 72.6
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 3.4e-80 302.0 200 72.5
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 6.5e-79 297.7 200 72.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.4e-78 296.6 200 69.0
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 3.0e-76 288.9 197 69.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.1e-76 288.1 202 68.3
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 5.1e-76 288.1 202 68.3
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.5e-75 286.6 200 68.0
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.5e-75 286.6 198 70.7
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.6e-75 285.8 197 68.5
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 9.7e-75 283.9 200 68.0
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.7e-74 283.1 202 67.8
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 2.8e-74 282.3 197 66.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.8e-73 279.6 199 67.8
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.4e-73 279.3 199 67.8
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.5e-72 276.6 200 67.0
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 2.6e-72 275.8 203 67.0
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.6e-72 275.8 197 64.5
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.6e-72 275.8 199 66.8
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.4e-72 275.4 203 67.5
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 3.4e-72 275.4 203 68.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.0e-71 273.9 193 67.9
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.7e-71 273.1 191 66.0
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.7e-71 273.1 200 64.5
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 2.9e-71 272.3 203 65.0
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 3.8e-71 271.9 203 66.0
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 5.0e-71 271.6 197 64.5
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 5.0e-71 271.6 203 65.5
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 8.5e-71 270.8 203 67.5
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 8.5e-71 270.8 197 67.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 2.5e-70 269.2 201 65.7
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 2.5e-70 269.2 201 65.7
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.5e-70 269.2 200 64.0
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 5.5e-70 268.1 203 65.5
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 5.5e-70 268.1 200 63.5
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 5.5e-70 268.1 199 64.3
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 7.2e-70 267.7 200 64.5
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 7.2e-70 267.7 202 64.9
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 9.4e-70 267.3 191 66.0
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 1.6e-69 266.5 203 66.0
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 2.1e-69 266.2 200 64.0
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.1e-69 266.2 191 63.9
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.6e-69 265.4 191 63.9
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.0e-68 263.8 203 62.6
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 6.7e-68 261.2 200 63.0
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 6.7e-68 261.2 200 63.0
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 6.7e-68 261.2 198 63.6
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 8.8e-68 260.8 203 62.6
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.1e-67 260.4 194 66.5
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.1e-67 260.4 200 63.5
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 3.7e-66 255.4 200 61.5
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 6.3e-66 254.6 196 61.2
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 8.2e-66 254.2 220 59.5
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 4.1e-65 251.9 200 64.0
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 5.3e-65 251.5 201 60.2
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 5.3e-65 251.5 201 59.7
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 5.3e-65 251.5 201 64.2
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 3.5e-64 248.8 196 60.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.7e-63 246.5 196 57.7
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.9e-63 245.7 194 61.9
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 5.0e-63 245.0 201 59.7
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 8.5e-63 244.2 201 58.2
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 3.2e-62 242.3 192 59.9
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 5.5e-62 241.5 145 81.4
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-61 240.4 200 59.0
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-61 240.4 200 59.0
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.6e-61 240.0 200 60.0
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.1e-61 239.6 227 55.5
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 8.0e-61 237.7 172 66.3
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.4e-60 236.9 192 58.3
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.8e-60 236.5 196 58.7
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 3.0e-60 235.7 195 59.0
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.0e-60 235.7 200 58.0
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 3.0e-60 235.7 268 48.5
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 3.0e-60 235.7 227 53.7
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 8.8e-60 234.2 200 60.5
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 8.8e-60 234.2 233 53.6
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 2.0e-59 233.0 226 54.9
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 2.0e-59 233.0 194 58.8
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.6e-59 232.6 148 76.4
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.7e-58 229.9 197 57.4
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 8.2e-58 227.6 195 57.9
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 8.2e-58 227.6 227 52.9
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 4.5e-56 221.9 198 58.1
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.0e-55 218.4 230 49.1
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.9e-54 216.5 175 59.4
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 7.2e-54 214.5 231 49.8
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 7.2e-54 214.5 175 65.1
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 9.4e-54 214.2 248 47.6
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 2.1e-53 213.0 192 53.1
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.0e-52 210.7 206 54.9
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 4.0e-52 208.8 147 68.7
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 4.0e-52 208.8 144 70.1
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 8.8e-52 207.6 233 45.1
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 8.8e-52 207.6 134 75.4
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 5.7e-51 204.9 233 45.9
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 2.2e-50 203.0 230 45.2
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 3.7e-50 202.2 230 44.8
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 4.8e-50 201.8 224 47.3
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 3.1e-49 199.1 193 56.5
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 7.7e-48 194.5 153 61.4
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.5e-46 190.3 194 45.4
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 9.5e-46 187.6 197 44.7
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.2e-45 187.2 252 40.9
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 8.0e-45 184.5 197 52.3
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 5.2e-44 181.8 193 50.8
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 2.6e-43 179.5 154 57.8
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.6e-43 179.5 205 45.9
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.8e-42 176.0 201 44.3
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.8e-42 176.0 201 44.3
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 7.0e-41 171.4 196 46.9
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.7e-40 169.5 197 43.1
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 3.3e-38 162.5 159 50.9
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 5.6e-38 161.8 112 70.5
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.1e-37 159.8 120 65.8
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 3.6e-37 159.1 151 52.3
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.0e-36 157.5 118 66.9
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.8e-36 156.8 198 42.9
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 8.9e-36 154.5 118 60.2
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.4e-35 152.1 200 44.0
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.2e-34 149.8 192 42.2
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 3.7e-34 149.1 111 64.9
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 9.2e-33 144.4 110 68.2
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.0e-32 141.7 191 40.8
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 3.0e-31 139.4 197 35.5
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.3e-30 135.6 112 58.9
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 4.3e-30 135.6 206 36.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 6.2e-29 131.7 197 43.1
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.3e-28 129.8 86 67.4
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 5.2e-28 128.6 157 44.6
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 8.9e-28 127.9 82 75.6
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.3e-26 124.0 120 50.8
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 5.4e-25 118.6 187 40.1
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 6.4e-18 95.1 204 29.9
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 8.3e-18 94.7 206 28.6
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.3e-15 86.7 61 73.8
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.8e-12 77.0 65 52.3
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.4e-11 72.8 59 64.4
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 1.5e-06 57.4 181 26.5


User provided reference genes

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