Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 4.4e-265 917.9 670 100.0
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 9.9e-249 863.6 671 96.7
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.4e-247 859.8 674 95.3
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 2.1e-243 845.9 674 95.0
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 1.7e-232 809.7 670 91.3
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 1.4e-231 806.6 672 90.8
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 2.3e-229 799.3 672 90.8
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 2.2e-227 792.7 670 90.1
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 1.4e-226 790.0 670 89.9
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 1.5e-225 786.6 672 90.2
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 2.0e-225 786.2 669 89.8
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 3.9e-221 771.9 457 87.3
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 9.4e-199 697.6 669 83.1
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 1.2e-198 697.2 673 81.3
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 7.5e-196 688.0 678 81.9
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 1.7e-195 686.8 671 82.1
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 3.1e-194 682.6 673 81.1
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 7.0e-194 681.4 679 81.0
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.5e-193 679.1 670 81.8
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 3.8e-192 675.6 671 81.5
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 1.5e-191 673.7 672 80.8
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.5e-191 673.7 683 79.8
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.9e-191 673.3 684 79.7
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.0e-189 667.5 671 79.6
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 1.4e-189 667.2 463 74.7
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.4e-189 667.2 670 81.3
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.2e-189 665.2 456 74.8
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 4.4e-188 662.1 671 79.9
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.8e-186 656.8 675 79.4
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 3.1e-186 656.0 675 80.3
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.2e-185 654.1 668 80.5
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.2e-185 654.1 675 78.4
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 1.3e-184 650.6 659 80.3
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 1.6e-182 643.7 668 79.6
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 2.8e-182 642.9 671 78.1
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 3.6e-182 642.5 670 80.0
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 3.6e-182 642.5 670 79.7
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 4.7e-182 642.1 679 76.4
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 6.1e-182 641.7 679 78.6
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 6.1e-182 641.7 661 80.6
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 8.0e-182 641.3 673 78.3
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 6.8e-181 638.3 457 74.0
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 8.9e-181 637.9 680 77.8
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 8.9e-181 637.9 676 76.9
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 5.7e-180 635.2 670 79.3
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 2.2e-179 633.3 675 77.2
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 3.7e-179 632.5 674 77.7
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.4e-178 630.6 460 70.4
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 3.5e-177 625.9 669 77.9
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 1.7e-176 623.6 659 78.8
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 2.9e-176 622.9 462 71.0
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 5.0e-176 622.1 673 77.4
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 8.6e-176 621.3 676 77.8
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 8.0e-174 614.8 680 75.3
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 1.4e-173 614.0 463 69.5
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 1.8e-173 613.6 676 77.2
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 4.0e-173 612.5 457 70.2
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 2.6e-172 609.8 475 68.4
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 2.6e-172 609.8 678 74.9
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.7e-171 607.1 672 75.6
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.9e-171 605.5 660 78.5
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.9e-170 603.6 670 75.8
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 2.4e-170 603.2 670 75.8
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 4.1e-170 602.4 660 78.3
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 5.4e-170 602.1 670 75.5
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 1.2e-169 600.9 473 67.4
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 7.8e-169 598.2 671 75.6
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 7.8e-169 598.2 661 77.8
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 5.0e-168 595.5 661 77.6
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 6.6e-168 595.1 681 75.3
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 1.5e-167 594.0 674 74.9
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.9e-167 593.6 670 75.2
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 9.5e-167 591.3 670 75.1
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 1.2e-166 590.9 653 73.8
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.3e-163 580.9 668 74.9
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.9e-162 577.0 671 73.8
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 1.3e-160 570.9 669 75.3
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.7e-160 570.5 671 74.1
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 3.0e-160 569.7 463 66.7
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 1.5e-159 567.4 670 73.6
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 4.3e-159 565.8 402 75.1
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 4.3e-159 565.8 458 66.2
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 2.1e-158 563.5 671 73.8
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 2.1e-158 563.5 709 70.8
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 6.2e-158 562.0 572 85.1
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 8.1e-158 561.6 671 72.9
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.5e-156 557.4 612 75.0
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 2.0e-156 557.0 671 73.2
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.0e-156 557.0 455 65.3
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 3.2e-154 549.7 671 70.5
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 4.1e-154 549.3 579 55.8
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 9.2e-154 548.1 469 62.3
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 4.6e-153 545.8 671 71.8
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 6.0e-153 545.4 360 78.6
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.0e-152 544.7 463 61.3
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 6.6e-152 542.0 671 71.8
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 4.7e-150 535.8 672 72.0
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 5.2e-149 532.3 668 60.6
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 4.4e-148 529.3 727 63.7
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 1.5e-143 514.2 442 63.6
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 1.5e-143 514.2 457 59.7
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 4.4e-140 502.7 387 67.7
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 3.8e-139 499.6 567 81.0
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 1.3e-136 491.1 572 79.0
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 4.6e-129 466.1 671 67.5
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 2.7e-121 440.3 684 64.6
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 3.0e-120 436.8 468 52.4
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 7.4e-119 432.2 631 59.1
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.1e-118 430.6 356 67.1
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 7.6e-116 422.2 319 70.2
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 3.2e-114 416.8 705 62.3
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.8e-109 401.0 294 75.5
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 8.5e-107 392.1 396 52.3
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 5.7e-103 379.4 280 70.7
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 6.3e-86 322.8 667 59.2
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 5.6e-66 256.5 383 45.4
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 1.0e-64 252.3 195 71.3
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 3.5e-60 237.3 146 87.7
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 1.1e-58 232.3 471 35.0
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 2.0e-55 221.5 140 77.9
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 9.8e-55 219.2 344 41.0
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 9.2e-53 212.6 164 62.2
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 7.3e-50 203.0 279 49.5
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 9.5e-50 202.6 483 31.3
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 4.0e-48 197.2 193 47.7
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.7e-46 191.8 143 69.2
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 8.3e-46 189.5 296 46.6
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 2.1e-44 184.9 526 28.3
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.7e-41 173.7 165 60.0
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.4e-37 162.2 130 59.2
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 1.2e-36 159.1 294 38.1
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 3.0e-35 154.5 147 52.4
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.5e-34 152.1 143 60.1
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 5.2e-32 143.7 116 64.7
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 9.6e-26 122.9 294 87.1
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 2.4e-24 118.2 108 57.4
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 2.4e-24 118.2 289 36.0
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 6.4e-22 110.2 66 80.3
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.3e-18 97.4 93 55.9
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 9.6e-18 96.3 75 62.7
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 9.0e-16 89.7 464 24.6
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.6e-15 88.2 82 51.2
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 7.1e-13 80.1 503 23.7
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 2.5e-10 71.6 178 31.5
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.1e-09 68.6 51 72.5
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 8.2e-09 66.6 52 69.2
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 2.4e-08 65.1 51 74.5
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.2e-07 62.8 53 67.9
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 7.6e-07 60.1 135 36.3
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 1.7e-06 58.9 37 73.0


User provided reference genes

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