Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 0.0e+00 1562.4 803 100.0
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 0.0e+00 1486.5 801 94.1
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 0.0e+00 1365.9 803 87.5
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 0.0e+00 1357.8 803 87.0
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 0.0e+00 1245.0 807 78.9
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 0.0e+00 1245.0 806 80.0
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 0.0e+00 1222.2 808 78.2
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 0.0e+00 1220.3 810 77.9
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 0.0e+00 1205.7 810 76.9
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 0.0e+00 1176.4 813 75.5
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 0.0e+00 1175.2 781 78.0
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 0.0e+00 1169.5 813 75.4
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 6.2e-306 1053.9 815 68.5
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 1.2e-304 1049.7 814 68.1
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 3.8e-303 1044.6 813 68.3
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 3.0e-300 1035.0 776 68.8
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.1e-299 1033.1 818 67.4
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 3.3e-299 1031.6 825 67.4
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 9.0e-297 1023.5 812 66.3
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 2.6e-296 1021.9 815 66.6
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.4e-296 1021.5 815 66.9
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 6.4e-295 1017.3 810 66.4
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.6e-293 1012.7 816 67.0
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.0e-292 1010.0 815 66.9
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 5.1e-292 1007.7 819 65.6
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 6.7e-292 1007.3 812 66.7
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.9e-291 1005.7 816 66.8
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.5e-291 1005.4 814 66.2
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 7.4e-291 1003.8 813 67.0
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.3e-290 1003.0 821 65.5
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 3.7e-290 1001.5 820 65.1
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.8e-287 991.5 862 63.5
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.2e-286 988.4 818 65.3
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.2e-285 986.5 803 65.1
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 1.3e-284 983.0 819 64.7
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 2.3e-284 982.2 827 63.5
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.9e-283 979.2 805 64.3
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 4.3e-283 978.0 815 64.3
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.3e-282 976.5 817 64.1
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.4e-281 973.0 814 64.3
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 9.0e-281 970.3 814 64.3
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.3e-279 966.5 817 63.8
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.7e-279 966.1 815 64.0
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 4.2e-278 961.4 813 63.5
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 5.1e-276 954.5 784 64.0
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 4.1e-273 944.9 818 62.6
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 4.1e-273 944.9 818 62.1
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 4.5e-272 941.4 798 62.0
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 1.0e-271 940.3 814 62.0
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.1e-270 936.8 800 62.0
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 1.1e-270 936.8 805 60.9
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 7.2e-270 934.1 823 61.2
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.9e-268 928.3 818 60.9
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 5.1e-268 927.9 819 61.1
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 6.7e-268 927.5 813 60.6
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 6.7e-268 927.5 828 62.4
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.1e-267 926.8 800 61.6
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 7.9e-261 904.0 832 60.7
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 5.1e-260 901.4 797 60.4
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 9.7e-259 897.1 797 60.1
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.8e-258 895.6 733 65.6
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 4.8e-258 894.8 815 60.5
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 1.4e-257 893.3 802 59.1
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.4e-257 893.3 815 60.4
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.8e-257 892.9 815 58.9
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 7.0e-257 891.0 804 60.1
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 7.0e-257 891.0 804 60.2
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 2.2e-255 885.9 797 59.7
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.6e-253 879.8 800 60.0
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 5.7e-251 871.3 801 59.6
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 4.8e-250 868.2 808 58.4
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.4e-249 865.9 824 57.9
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 3.1e-249 865.5 820 58.2
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 7.0e-249 864.4 794 59.6
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 9.1e-249 864.0 819 58.1
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.2e-248 863.6 818 58.1
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 2.0e-248 862.8 821 57.7
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 4.5e-248 861.7 820 58.0
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 4.5e-248 861.7 801 57.8
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 1.3e-247 860.1 799 57.4
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 5.0e-247 858.2 801 57.6
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.7e-245 851.7 816 57.5
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.8e-244 849.7 818 57.3
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 8.8e-244 847.4 819 57.1
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 9.8e-243 844.0 815 57.8
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 9.1e-241 837.4 813 57.4
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 9.1e-241 837.4 794 57.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 4.5e-240 835.1 815 57.4
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 5.9e-240 834.7 822 57.4
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 5.9e-240 834.7 822 57.4
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 5.9e-240 834.7 822 57.4
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 1.8e-233 813.1 805 55.4
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.5e-230 802.7 827 55.4
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 6.8e-228 794.7 808 55.4
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 6.2e-221 771.5 622 67.4
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 1.1e-212 744.2 796 53.3
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 2.7e-192 676.4 493 73.6
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.9e-191 672.5 641 57.6
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.7e-186 657.1 650 56.2
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.2e-186 656.8 650 56.2
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.3e-182 642.9 486 68.3
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 4.3e-182 642.5 503 67.8
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.4e-180 637.5 499 67.9
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 4.5e-179 632.5 499 66.9
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 1.5e-174 617.5 480 67.5
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 4.3e-174 615.9 500 65.4
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.5e-171 607.4 492 65.2
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.5e-171 607.4 492 65.2
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 3.0e-167 593.2 851 43.8
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 6.5e-162 575.5 493 63.9
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 6.9e-156 555.4 473 61.9
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 4.5e-155 552.7 559 53.0
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 1.2e-152 544.7 455 61.5
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 5.1e-151 539.3 467 61.7
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.7e-149 534.3 740 44.3
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.5e-145 520.4 457 62.1
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 9.4e-145 518.5 457 59.7
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.1e-144 517.3 458 60.3
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 3.9e-143 513.1 461 59.4
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 4.4e-142 509.6 474 58.0
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 7.4e-142 508.8 465 58.9
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.1e-140 503.4 506 54.0
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 8.0e-136 488.8 457 59.1
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.4e-135 488.0 412 61.7
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 5.7e-134 482.6 456 56.4
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 1.7e-133 481.1 693 43.1
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.1e-132 478.4 462 56.1
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.2e-131 474.9 472 55.5
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 3.8e-130 469.9 694 41.6
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 8.8e-127 458.8 454 54.6
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 4.4e-126 456.4 456 54.8
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 5.7e-126 456.1 456 54.8
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.7e-123 447.2 730 40.1
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 5.9e-123 446.0 761 37.8
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 2.3e-122 444.1 468 53.4
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.7e-118 429.5 343 65.9
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.3e-113 413.7 463 51.8
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 3.2e-100 370.5 312 62.2
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 6.4e-93 346.3 636 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.1e-89 335.5 463 43.0
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.9e-89 334.7 273 66.3
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.4e-87 327.8 231 76.6
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.2e-80 305.4 197 79.7
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 5.6e-65 253.4 358 40.2
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.3e-58 232.3 788 28.3
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.2e-54 219.2 147 70.1
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 7.6e-54 216.5 160 69.4
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 7.6e-54 216.5 160 69.4
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 3.9e-50 204.1 452 32.7
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 4.1e-47 194.1 396 36.9
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 7.7e-46 189.9 132 71.2
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 8.5e-45 186.4 135 65.2
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.4e-25 120.9 91 59.3
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.4e-18 99.4 87 64.4
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.0e-18 98.2 154 44.2
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.0e-18 98.2 154 43.5
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 3.3e-17 94.7 70 60.0
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.1e-15 89.7 97 48.5
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.2e-09 69.7 54 57.4


User provided reference genes

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