Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.1e-208 729.6 343 100.0
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 1.6e-189 666.0 318 97.5
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 7.7e-189 663.7 318 97.8
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.7e-188 662.5 318 96.5
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.0e-180 636.7 318 93.4
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 1.8e-174 615.9 318 89.9
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 5.0e-172 607.8 318 89.6
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.1e-171 606.7 318 89.6
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.9e-171 605.9 318 89.0
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 1.2e-170 603.2 318 87.4
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.2e-170 603.2 318 87.4
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.0e-157 557.8 347 75.2
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 3.0e-156 555.4 319 80.9
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 4.3e-155 551.6 318 80.8
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 1.2e-154 550.1 319 80.6
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 2.1e-154 549.3 319 80.3
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 4.0e-153 545.0 318 78.6
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 2.0e-152 542.7 319 78.1
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 2.6e-152 542.3 320 77.5
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.2e-151 539.3 319 78.7
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 2.9e-151 538.9 319 78.1
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 3.7e-151 538.5 319 77.4
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.7e-151 538.5 319 78.7
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.1e-150 537.0 319 78.7
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 1.1e-150 537.0 317 77.0
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 1.1e-150 537.0 319 78.1
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 2.4e-150 535.8 319 76.8
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 5.4e-150 534.6 319 76.8
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 5.4e-150 534.6 319 77.7
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 5.4e-150 534.6 319 76.5
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 9.2e-150 533.9 319 77.4
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.6e-149 533.1 319 77.7
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 2.1e-149 532.7 319 74.9
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 2.7e-149 532.3 319 76.2
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 4.6e-149 531.6 319 78.4
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.3e-148 530.0 319 75.9
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 1.7e-148 529.6 321 78.2
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 3.0e-148 528.9 318 75.8
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 3.0e-148 528.9 317 75.1
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 3.9e-148 528.5 319 75.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 8.6e-148 527.3 319 75.5
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 8.6e-148 527.3 319 75.9
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 8.6e-148 527.3 269 90.7
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 1.9e-147 526.2 318 75.8
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.5e-147 525.8 319 75.5
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.3e-147 525.4 319 77.7
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 2.1e-146 522.7 319 74.3
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 2.8e-146 522.3 319 74.6
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 6.2e-146 521.2 319 74.6
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.8e-145 519.6 319 74.6
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.8e-145 519.6 319 74.6
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.8e-145 519.6 338 73.1
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 2.4e-145 519.2 328 74.7
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 8.9e-145 517.3 333 71.8
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 8.9e-145 517.3 319 74.3
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.0e-144 516.2 352 69.9
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.7e-143 513.1 318 74.8
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.2e-143 512.7 322 73.3
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 2.9e-143 512.3 318 72.6
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 6.4e-143 511.1 319 73.4
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.4e-142 510.0 318 73.3
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 1.9e-142 509.6 319 74.6
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 2.4e-142 509.2 318 73.9
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.3e-140 503.4 318 71.1
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 1.7e-140 503.1 321 74.8
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.7e-140 503.1 319 72.7
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 6.6e-140 501.1 341 70.4
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 4.3e-139 498.4 318 70.8
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.6e-138 496.5 318 70.4
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 3.6e-138 495.4 318 70.8
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 3.6e-138 495.4 318 70.8
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 5.3e-137 491.5 319 70.5
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 6.9e-137 491.1 299 75.3
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 6.9e-137 491.1 299 75.3
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 9.0e-137 490.7 318 70.4
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 9.0e-137 490.7 318 70.4
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.5e-136 490.0 318 69.5
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 2.6e-136 489.2 285 77.2
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 3.4e-136 488.8 318 70.4
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 4.4e-136 488.4 319 70.8
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 9.9e-136 487.3 318 69.5
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.7e-135 486.5 318 70.1
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.7e-135 486.5 318 70.1
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 3.2e-134 482.3 319 70.2
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 7.1e-134 481.1 314 69.1
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 9.3e-134 480.7 319 69.9
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 1.3e-132 476.9 363 63.6
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.3e-132 476.9 320 67.5
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 8.7e-132 474.2 388 59.5
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 8.7e-132 474.2 319 71.5
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.1e-131 473.8 318 68.2
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.5e-131 473.4 318 68.2
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 9.6e-131 470.7 318 66.4
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.3e-130 470.3 319 66.1
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 2.1e-130 469.5 318 67.9
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.8e-129 466.5 318 67.9
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 2.4e-129 466.1 320 66.9
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 6.9e-129 464.5 306 69.3
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.9e-127 459.1 319 69.0
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 8.4e-127 457.6 318 66.4
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 5.4e-126 454.9 309 69.3
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.3e-124 450.3 319 67.1
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 1.4e-121 440.3 255 78.4
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 2.9e-119 432.6 319 61.4
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 5.5e-118 428.3 376 57.4
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 2.7e-117 426.0 319 61.1
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 9.0e-113 411.0 276 69.9
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 9.0e-113 411.0 303 65.7
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 2.2e-111 406.4 319 58.0
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 6.9e-105 384.8 223 80.7
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 3.7e-98 362.5 231 73.2
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.0e-96 356.7 201 81.1
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.2e-93 347.4 320 56.9
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.3e-87 327.4 180 83.9
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 6.1e-77 292.0 200 68.0
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.1e-73 279.6 158 78.5
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 6.1e-69 265.4 172 70.9
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 6.1e-69 265.4 197 58.9
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 3.7e-66 256.1 230 49.1
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 4.8e-66 255.8 199 61.3
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 2.4e-65 253.4 229 47.6
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 1.5e-59 234.2 226 47.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.1e-57 226.1 129 77.5
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 4.9e-50 202.6 121 74.4
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 8.0e-45 185.3 108 78.7
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.6e-40 169.5 277 31.4
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 7.8e-40 168.7 87 89.7
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 8.1e-37 158.7 129 58.9
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.1e-36 156.8 94 75.5
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 3.7e-34 149.8 224 39.3
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.9e-25 120.9 71 73.2
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.2e-25 120.2 82 62.2
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 3.3e-22 110.2 314 24.8
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 6.9e-20 102.4 152 41.4
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 7.6e-19 99.0 73 60.3
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.7e-18 97.8 69 63.8
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.2e-18 97.4 147 40.1
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 9.6e-14 82.0 54 75.9
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.3e-13 81.6 44 81.8
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 2.0e-11 74.3 56 66.1
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 4.5e-11 73.2 180 29.4
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 2.2e-10 70.9 176 33.0
SMO358G0162 Selaginella moellendorffii HOM05D000684 ORTHO05D000688 2.4e-09 67.4 166 25.3
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.6e-08 64.7 77 33.8
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.1e-08 64.3 100 39.0
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.1e-08 64.3 69 46.4
BraA01t03919Z Brassica rapa HOM05D000684 ORTHO05D000688 3.5e-08 63.5 152 23.7
Mapoly0100s0059 Marchantia polymorpha HOM05D000684 ORTHO05D000688 4.6e-08 63.2 164 26.8
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.0e-08 62.8 32 81.2
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 7.9e-08 62.4 68 42.6
Ah.14g089530 Amaranthus hybridus HOM05D000836 ORTHO05D000709 1.8e-07 61.2 154 24.0
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 2.3e-07 60.8 71 36.6
EL10Ac8g20396 Beta vulgaris HOM05D000836 ORTHO05D000709 1.5e-06 58.2 246 20.3
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 1.9e-06 57.8 159 22.6
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.9e-06 57.8 41 53.7
Pp3c16_19410 Physcomitrium patens HOM05D000684 ORTHO05D000688 3.3e-06 57.0 228 21.5
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 4.3e-06 56.6 109 29.4
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 4.3e-06 56.6 174 26.4
FAN27G1321 Fragaria x ananassa HOM05D000347 ORTHO05D001997 9.6e-06 55.5 95 29.5
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 9.6e-06 55.5 125 30.4


User provided reference genes

Program Settings