Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 1.3e-111 406.4 198 100.0
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 2.3e-68 262.7 188 75.0
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 3.3e-67 258.8 185 73.5
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 3.3e-67 258.8 176 78.4
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 4.8e-66 255.0 182 72.5
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.5e-64 250.0 184 73.4
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.3e-63 246.9 182 72.0
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.3e-63 246.9 182 72.0
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 1.1e-62 243.8 184 71.7
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.2e-61 240.4 188 68.1
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.7e-61 239.2 188 67.6
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.5e-61 238.8 188 67.6
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 6.0e-61 238.0 188 68.1
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.3e-60 236.9 188 67.0
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 2.3e-60 236.1 209 61.7
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 3.0e-60 235.7 183 67.8
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 8.7e-60 234.2 183 67.8
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 8.7e-60 234.2 187 67.9
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 1.5e-59 233.4 202 63.4
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.9e-59 233.0 187 67.9
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 4.3e-59 231.9 193 64.8
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.1e-58 229.6 200 62.5
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 2.8e-58 229.2 168 70.8
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 6.3e-58 228.0 185 68.1
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.1e-57 227.3 184 65.2
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.8e-57 226.5 181 66.9
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 6.9e-57 224.6 207 61.8
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 9.0e-57 224.2 196 61.7
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.5e-56 223.4 118 89.0
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.5e-56 223.4 151 74.8
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.5e-56 223.4 202 59.9
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 3.4e-56 222.2 202 59.9
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 3.4e-56 222.2 203 61.1
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 5.9e-56 221.5 211 58.3
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 5.9e-56 221.5 188 61.2
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 7.6e-56 221.1 189 63.0
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 7.6e-56 221.1 210 60.0
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 7.6e-56 221.1 164 67.1
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.2e-55 219.5 198 60.1
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 6.5e-55 218.0 191 60.7
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 1.1e-54 217.2 179 62.0
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 1.4e-54 216.9 194 60.8
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 1.4e-54 216.9 207 59.4
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.9e-54 216.5 196 61.2
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.9e-54 216.5 189 59.3
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 1.9e-54 216.5 175 65.1
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 2.5e-54 216.1 157 68.2
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 3.2e-54 215.7 195 61.0
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 4.2e-54 215.3 120 82.5
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 4.2e-54 215.3 210 59.5
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 4.2e-54 215.3 187 63.6
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 5.5e-54 214.9 120 82.5
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 5.5e-54 214.9 134 77.6
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 7.2e-54 214.5 157 68.2
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 7.2e-54 214.5 178 62.4
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 1.6e-53 213.4 178 64.0
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 1.6e-53 213.4 189 59.3
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 3.5e-53 212.2 191 61.3
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 3.5e-53 212.2 192 59.9
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 6.1e-53 211.5 174 63.2
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 7.9e-53 211.1 200 59.0
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.3e-52 210.3 179 62.0
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 1.3e-52 210.3 131 75.6
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 1.3e-52 210.3 131 75.6
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.3e-52 210.3 131 75.6
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.3e-52 210.3 131 75.6
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 1.3e-52 210.3 131 75.6
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 1.3e-52 210.3 205 55.6
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 1.8e-52 209.9 176 63.1
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 3.9e-52 208.8 196 58.7
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 3.9e-52 208.8 178 61.2
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 8.7e-52 207.6 185 60.5
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.1e-51 207.2 171 63.2
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 1.5e-51 206.8 177 62.1
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.5e-51 206.1 172 61.6
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 4.3e-51 205.3 203 55.2
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 7.4e-51 204.5 173 63.6
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 7.4e-51 204.5 202 55.9
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 1.3e-50 203.8 153 64.7
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.3e-50 203.8 171 62.6
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 1.3e-50 203.8 163 64.4
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 2.8e-50 202.6 202 56.9
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 2.8e-50 202.6 203 55.2
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 3.7e-50 202.2 174 59.8
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 3.7e-50 202.2 207 55.1
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 3.7e-50 202.2 213 53.1
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 4.8e-50 201.8 205 56.1
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 4.8e-50 201.8 112 82.1
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 8.2e-50 201.1 160 62.5
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 8.2e-50 201.1 173 60.1
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 8.2e-50 201.1 167 64.1
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 1.1e-49 200.7 173 60.1
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 4.1e-49 198.7 218 52.3
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 5.3e-49 198.4 187 54.5
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 9.0e-49 197.6 191 56.0
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 1.2e-48 197.2 204 56.9
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 3.4e-48 195.7 183 58.5
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 7.7e-48 194.5 114 76.3
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 2.9e-47 192.6 114 75.4
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 2.9e-47 192.6 185 55.1
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 5.0e-47 191.8 145 65.5
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.9e-46 189.9 129 68.2
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 5.5e-46 188.3 106 80.2
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 9.4e-46 187.6 140 64.3
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.2e-45 187.2 129 68.2
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 4.6e-45 185.3 135 65.2
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 3.0e-44 182.6 185 52.4
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 6.7e-44 181.4 140 63.6
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.5e-43 179.5 128 64.8
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 7.4e-43 177.9 184 53.3
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.3e-42 177.2 109 75.2
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.8e-42 176.0 139 61.9
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 6.3e-42 174.9 153 58.2
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 4.1e-41 172.2 109 73.4
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.5e-40 170.2 174 56.9
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 7.7e-40 167.9 110 69.1
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 3.8e-39 165.6 142 62.0
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 3.8e-39 165.6 108 68.5
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.8e-36 156.8 139 56.1
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 8.8e-36 154.5 110 63.6
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 9.7e-35 151.0 117 60.7
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 7.2e-30 134.8 109 56.9
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 1.2e-29 134.0 141 46.8
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.0e-27 126.7 122 53.3
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 3.1e-25 119.4 145 42.8
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 1.0e-23 114.4 150 42.0
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 6.5e-15 85.1 83 48.2


User provided reference genes

Program Settings