Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 2079.3 984 100.0
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1925.2 976 93.6
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1812.0 985 88.2
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1775.8 984 86.2
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1737.6 988 83.7
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1723.8 983 83.0
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1715.7 990 83.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1699.5 980 83.2
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1692.6 981 81.0
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1689.1 988 81.4
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1671.0 981 80.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1670.6 996 79.8
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1666.7 971 80.4
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1666.0 977 81.2
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1658.7 991 79.9
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1657.9 971 80.5
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1646.3 973 80.1
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1645.9 984 79.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1637.1 984 79.2
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1635.9 981 79.4
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1622.8 977 79.0
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1616.3 975 78.3
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1613.2 983 77.1
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1593.2 982 75.9
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1590.5 976 76.7
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1585.9 977 76.7
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1585.1 979 76.6
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1583.2 968 77.0
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1582.8 977 76.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1582.8 969 76.8
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1581.2 979 76.2
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1580.5 983 76.1
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1577.0 994 75.6
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1577.0 980 75.3
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1571.6 983 75.8
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1570.4 979 75.6
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1570.1 980 75.6
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1567.4 983 75.5
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1567.0 1000 74.5
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1563.9 994 75.3
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 982 74.7
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1563.1 976 75.2
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 980 75.0
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1554.7 982 75.5
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1546.9 982 74.5
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1546.2 987 75.1
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1545.4 987 73.9
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1545.0 987 75.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1540.4 981 74.0
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 983 73.8
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1533.9 987 73.8
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1531.5 980 74.5
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 984 72.6
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1525.8 989 73.0
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1524.2 968 75.0
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 988 73.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1520.0 975 73.8
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1516.1 984 72.9
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1516.1 976 73.8
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1515.0 989 72.6
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1514.2 992 73.0
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1513.8 987 72.5
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1513.4 984 72.7
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1508.0 976 72.4
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1507.3 985 71.7
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1506.9 976 72.6
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1505.0 974 72.7
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 974 72.6
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1500.3 971 73.2
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1500.3 974 72.2
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1499.6 994 71.5
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 982 72.0
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1491.1 984 70.9
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1486.9 978 71.4
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1484.2 932 75.6
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1482.6 984 71.5
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1481.8 981 72.0
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1481.5 979 70.9
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 976 72.1
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1480.7 980 71.6
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1478.8 989 71.2
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1478.4 979 71.2
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1477.6 991 70.9
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 985 70.5
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1464.1 980 70.7
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1459.9 980 70.9
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1458.4 991 69.2
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1453.0 952 72.3
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1451.0 986 70.4
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 973 70.2
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 976 69.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1443.3 977 70.7
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1434.5 986 70.4
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1424.5 980 70.0
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1422.9 779 85.0
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1421.0 969 70.0
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1419.1 1001 68.9
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1414.1 981 69.2
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1410.6 979 67.5
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1410.2 980 69.9
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1405.6 981 69.3
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1401.7 982 69.6
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1396.7 883 74.1
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1396.3 985 68.6
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1396.3 906 72.7
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1394.4 976 69.6
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1393.6 979 68.8
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1392.5 976 69.4
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1390.9 976 68.9
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1389.4 983 69.2
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1389.4 983 69.2
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1384.0 976 69.6
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1380.2 977 68.5
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1379.4 798 82.7
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1378.6 976 69.4
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1367.8 856 75.5
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1367.1 858 74.8
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1364.7 979 67.9
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1347.4 1014 64.0
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1315.8 988 64.3
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1307.0 976 66.8
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1278.1 983 65.7
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1263.8 983 64.9
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1210.7 857 68.3
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1210.3 764 74.9
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1189.1 792 71.8
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1149.0 793 69.0
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.6e-306 1055.4 981 53.9
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 2.9e-297 1025.4 971 53.5
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.1e-296 1023.5 681 70.9
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 4.8e-284 981.5 713 67.5
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.0e-278 963.8 987 51.2
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.3e-268 930.2 971 49.6
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.2e-263 913.7 975 49.8
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 3.8e-241 839.0 566 70.5
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 9.5e-240 834.3 857 50.6
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.0e-193 681.4 414 74.9
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.0e-124 452.2 293 74.4
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 2.6e-112 411.0 410 53.2
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 5.8e-112 409.8 355 60.0
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 8.9e-105 386.0 209 83.7
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.2e-104 385.6 383 53.0
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.1e-89 335.9 192 80.2
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.9e-86 325.1 276 60.1
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.8e-85 319.7 213 70.4
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.3e-74 285.8 159 80.5
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 6.7e-68 263.5 143 82.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.1e-67 262.7 212 58.0
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 7.4e-59 233.4 168 68.5
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.5e-56 225.7 651 29.8
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 8.5e-55 219.9 378 39.4
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 3.2e-46 191.4 96 86.5
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 4.7e-37 161.0 799 22.9
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.0e-36 159.8 148 52.7
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 4.4e-35 154.5 145 54.5
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.7e-34 151.4 86 83.7
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 4.1e-33 147.9 148 54.1
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.1e-30 139.8 160 46.9
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.6e-29 136.0 98 59.2
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.7e-26 125.9 184 42.9
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.1e-25 123.2 88 65.9
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-25 123.2 185 39.5
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 7.0e-25 120.6 104 61.5
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.0e-19 102.4 127 43.3
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.0e-16 92.4 309 25.9
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.7e-15 89.4 118 43.2
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 2.9e-15 88.6 114 45.6
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.6e-11 75.5 46 67.4
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 4.1e-09 68.2 76 46.1
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 9.2e-09 67.0 85 48.2
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.0e-08 65.9 45 66.7
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 7.8e-08 63.9 48 64.6
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.9e-07 62.0 49 61.2


User provided reference genes

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