Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1643.2 810 100.0
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1462.6 758 94.5
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1451.4 798 90.1
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1446.0 802 88.9
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1398.3 798 85.8
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1390.9 798 85.8
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1385.9 789 86.1
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1381.7 793 86.0
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1379.4 800 85.0
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1370.9 757 87.2
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1273.1 753 80.2
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1272.7 823 75.2
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1272.3 814 76.2
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1269.2 777 78.9
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1268.4 802 77.4
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1268.4 816 77.1
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1266.9 827 75.7
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1263.4 756 79.8
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1262.3 783 78.4
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1260.7 753 80.3
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1257.7 810 75.8
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1256.5 747 79.7
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1255.0 797 77.0
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1255.0 810 75.6
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1253.4 707 86.8
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1250.0 817 75.2
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1247.6 810 75.2
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1245.0 806 76.3
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1244.2 812 76.0
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1239.2 775 77.3
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1238.0 787 75.9
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1236.1 831 74.7
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1226.1 754 76.0
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1224.9 811 74.4
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1222.2 806 74.4
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1219.5 783 75.2
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1218.8 824 73.7
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1216.1 781 76.4
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1215.3 751 76.7
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1214.9 804 73.1
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1213.0 812 72.4
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1211.4 796 73.1
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1210.7 748 77.7
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1209.5 763 75.6
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1203.3 746 76.8
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1199.9 740 76.6
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1198.7 758 75.2
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1198.3 807 72.1
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1198.0 806 73.4
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1194.5 760 75.5
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1192.9 754 75.6
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1191.4 813 71.6
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1190.6 758 74.8
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1190.6 796 72.7
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1189.9 807 72.9
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1187.9 777 74.0
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1187.9 810 73.1
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1186.8 809 73.1
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1186.4 801 72.7
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1186.0 814 72.2
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1186.0 807 72.1
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1185.6 777 73.6
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1184.5 808 72.5
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1184.5 818 72.5
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1184.5 809 72.3
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1184.1 802 72.8
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1182.2 813 71.7
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1179.5 821 70.8
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1178.7 795 72.8
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1173.7 742 75.2
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1172.5 782 72.4
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1171.4 807 71.0
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1165.2 813 71.5
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1164.8 746 73.7
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 800 71.1
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1155.6 693 80.4
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1151.7 760 73.3
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1134.8 767 73.1
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1132.9 803 70.2
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1118.2 688 76.7
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1114.4 753 71.2
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1112.4 766 70.2
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1105.5 813 67.3
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1093.6 810 67.5
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1088.6 813 68.8
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1087.8 695 74.1
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1087.4 663 78.9
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 2.4e-310 1068.5 757 69.7
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 2.7e-309 1065.1 685 74.9
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 5.7e-307 1057.4 613 85.3
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 1.2e-301 1039.6 741 68.2
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 7.9e-301 1036.9 891 61.7
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 2.8e-298 1028.5 625 79.7
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 7.4e-283 977.2 745 62.1
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 9.7e-283 976.9 748 61.2
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 2.6e-275 952.2 754 59.5
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.6e-256 889.8 635 67.2
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 4.6e-248 861.7 689 63.9
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 6.2e-245 851.3 630 65.4
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-221 773.9 689 54.6
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 1.5e-206 723.8 523 66.7
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 5.2e-167 592.4 789 41.7
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 1.6e-152 544.3 354 68.6
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 2.9e-146 523.5 606 49.7
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.4e-126 456.4 296 72.3
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 4.0e-103 380.2 289 71.6
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 7.1e-92 342.8 264 62.9
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 5.1e-90 336.7 225 75.6
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.9e-85 320.9 254 66.9
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 2.2e-64 251.5 148 79.1
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 1.4e-55 222.2 146 77.4
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 2.7e-51 208.0 122 79.5
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 5.7e-41 173.7 127 64.6
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 7.7e-38 163.3 96 75.0
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 1.5e-28 132.5 157 47.8
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.4e-23 115.9 92 59.8
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 4.1e-23 114.4 114 48.2
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 2.5e-20 105.1 105 56.2
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 2.1e-19 102.1 62 79.0
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.3e-16 92.8 56 80.4
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 2.4e-15 88.6 45 88.9
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.5e-12 78.6 43 79.1
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 4.4e-09 67.8 47 74.5
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 4.9e-08 64.3 40 75.0
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 5.4e-07 60.8 37 75.7


User provided reference genes

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