Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 6.1e-197 690.6 357 100.0
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.3e-98 364.0 367 62.4
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 8.5e-90 334.7 379 54.9
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.5e-86 323.9 364 54.7
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 3.4e-86 322.8 378 54.5
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 6.3e-85 318.5 381 52.8
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 3.5e-83 312.8 383 52.7
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.3e-82 310.8 404 50.2
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.1e-76 291.2 377 51.5
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 7.0e-76 288.5 377 51.5
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.3e-73 279.6 445 46.3
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 9.2e-68 261.5 389 48.8
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 2.3e-63 246.9 380 45.0
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 4.0e-63 246.1 384 46.1
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 4.1e-60 236.1 371 45.6
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 3.5e-59 233.0 391 45.0
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.8e-56 223.4 399 43.4
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 8.9e-55 218.4 365 45.2
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.5e-54 217.6 399 43.4
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.0e-54 217.2 406 42.6
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.7e-53 214.2 390 42.1
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.2e-53 213.8 386 43.8
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.1e-52 211.5 388 43.0
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 4.1e-52 209.5 406 40.9
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 6.0e-51 205.7 418 40.7
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.7e-50 204.1 372 43.3
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 5.1e-50 202.6 394 40.9
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.8e-48 196.8 373 40.8
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 3.6e-48 196.4 396 40.9
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 8.1e-48 195.3 367 41.4
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 8.1e-48 195.3 382 40.8
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.8e-47 194.1 388 40.5
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.8e-47 194.1 391 39.4
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 3.1e-47 193.4 390 40.0
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 5.2e-47 192.6 422 40.0
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 5.2e-47 192.6 390 41.0
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.5e-46 191.0 382 40.3
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.5e-46 191.0 392 39.5
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.0e-46 190.7 393 40.2
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 2.0e-46 190.7 411 39.2
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.4e-46 189.5 389 39.1
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 7.6e-46 188.7 365 40.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.3e-45 188.0 372 40.6
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 2.2e-45 187.2 387 38.8
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 4.9e-45 186.0 375 40.0
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 8.4e-45 185.3 351 41.0
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 8.4e-45 185.3 386 38.9
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.4e-44 184.5 380 37.6
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.4e-44 184.5 374 40.1
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 4.2e-44 183.0 386 39.6
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 5.4e-44 182.6 420 37.6
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.1e-43 180.6 372 40.9
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 3.5e-43 179.9 421 37.5
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.8e-43 178.7 382 38.5
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.3e-42 177.9 400 39.5
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 3.0e-42 176.8 371 39.9
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 5.1e-42 176.0 389 39.8
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 6.6e-42 175.6 442 38.0
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.8e-40 170.2 385 38.7
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 6.2e-40 169.1 374 39.6
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.1e-39 168.3 401 36.2
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.4e-39 167.9 394 37.1
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.8e-39 167.5 416 37.7
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 3.1e-39 166.8 417 37.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 5.3e-39 166.0 373 36.7
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 5.3e-39 166.0 389 36.5
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 5.3e-39 166.0 389 39.3
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.6e-38 163.7 391 37.9
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 2.6e-38 163.7 423 36.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 3.4e-38 163.3 306 42.8
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 7.6e-38 162.2 267 41.6
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 9.9e-38 161.8 364 38.5
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 8.4e-37 158.7 415 35.7
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.4e-36 157.9 410 36.1
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.9e-36 157.5 410 36.1
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 3.2e-36 156.8 386 36.0
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.7e-35 153.7 370 38.1
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.5e-35 153.3 395 36.5
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.0e-34 151.8 380 39.7
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 3.0e-34 150.2 330 39.7
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.5e-33 147.1 391 35.5
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.3e-33 146.7 405 35.1
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.6e-32 144.4 378 37.0
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.8e-32 143.7 364 37.6
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 3.7e-32 143.3 382 38.2
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 6.2e-32 142.5 407 33.9
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.4e-30 136.7 319 38.9
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 3.4e-30 136.7 415 35.7
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 3.4e-30 136.7 379 35.1
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.7e-29 134.4 386 36.3
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.2e-29 134.0 363 37.2
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 2.9e-29 133.7 382 35.1
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 2.9e-29 133.7 382 35.1
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 4.9e-29 132.9 338 36.7
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 8.4e-29 132.1 376 36.2
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 8.4e-29 132.1 389 35.5
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 8.4e-29 132.1 376 36.2
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.4e-28 131.3 392 34.9
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.9e-28 131.0 415 33.7
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.9e-28 131.0 374 34.5
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 2.4e-28 130.6 364 35.4
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.2e-28 130.2 405 32.1
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 9.3e-28 128.6 344 35.8
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.0e-26 125.2 334 36.8
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.3e-26 124.8 406 32.8
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 5.1e-26 122.9 327 36.4
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 5.1e-26 122.9 327 36.4
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 5.1e-26 122.9 327 36.4
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 8.7e-26 122.1 379 34.6
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 8.7e-26 122.1 388 32.7
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.1e-25 121.7 397 32.7
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 3.3e-25 120.2 381 32.5
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.3e-25 119.8 422 31.5
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 7.4e-25 119.0 373 35.9
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.3e-24 118.2 386 34.2
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.6e-24 117.9 226 42.9
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 3.7e-24 116.7 175 49.7
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.4e-23 114.8 260 38.5
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.4e-23 114.0 419 32.5
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 2.4e-23 114.0 330 33.9
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 2.4e-23 114.0 330 33.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.4e-23 114.0 396 30.8
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 9.0e-23 112.1 380 33.9
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.2e-22 111.7 349 33.0
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.3e-21 108.2 340 34.1
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 6.5e-21 105.9 337 35.0
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 6.5e-21 105.9 430 30.9
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 4.2e-20 103.2 204 40.7
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.5e-20 102.8 387 31.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.6e-19 101.3 367 32.4
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.5e-19 100.1 234 41.5
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 3.9e-18 96.7 366 31.7
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.9e-17 94.4 375 31.2
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.9e-17 94.4 340 30.0
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.3e-17 93.2 388 29.6
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 4.1e-15 86.7 193 40.9
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.7e-13 81.3 420 28.6
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 5.0e-13 79.7 293 29.7
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.3e-10 71.6 185 36.2
Psat2g009520 Pisum sativum HOM05D005109 ORTHO05D006084 1.9e-09 67.8 89 44.9
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 8.2e-08 62.4 211 32.7


User provided reference genes

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