Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 0.0e+00 1115.1 588 100.0
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 5.8e-293 1010.4 601 86.9
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.2e-244 849.0 584 76.0
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.8e-228 795.0 559 74.6
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 7.2e-219 764.2 613 69.7
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 4.7e-218 761.5 601 68.7
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 5.2e-217 758.1 612 69.4
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 2.2e-215 752.7 588 71.6
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 1.8e-214 749.6 617 67.3
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 7.7e-213 744.2 577 72.3
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 2.2e-212 742.7 597 68.2
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 6.5e-212 741.1 580 72.2
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 1.4e-209 733.4 576 70.0
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 2.3e-209 732.6 602 68.4
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 8.8e-209 730.7 579 69.6
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 5.7e-208 728.0 583 71.2
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 2.8e-207 725.7 591 68.4
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 1.4e-206 723.4 594 70.0
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.0e-204 717.2 608 68.1
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.9e-204 715.7 596 67.3
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.0e-201 705.7 573 67.2
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 6.8e-201 704.5 632 65.2
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 4.1e-198 695.3 580 65.2
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 9.1e-198 694.1 585 63.8
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 2.5e-195 686.0 597 62.6
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.6e-194 682.2 577 64.3
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.2e-192 677.2 589 64.0
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 3.7e-191 672.2 576 67.4
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 4.9e-191 671.8 592 63.5
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 8.3e-191 671.0 597 62.3
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.8e-190 669.8 568 65.1
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.1e-190 669.1 597 62.3
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 4.1e-190 668.7 593 66.4
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 5.4e-190 668.3 590 64.6
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.2e-189 667.2 594 61.3
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 2.0e-189 666.4 588 61.6
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 2.0e-189 666.4 565 65.7
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 4.5e-189 665.2 577 65.5
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 7.8e-189 664.5 594 65.0
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.0e-188 664.1 513 72.1
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.3e-188 662.9 597 60.6
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 2.3e-188 662.9 590 65.6
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 2.3e-188 662.9 578 63.7
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 2.9e-188 662.5 600 60.3
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.9e-188 662.1 597 60.8
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 3.9e-188 662.1 574 64.8
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 8.6e-188 661.0 584 61.1
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.9e-187 659.8 585 65.3
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.5e-187 659.4 579 65.5
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.1e-186 656.4 576 62.3
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 3.6e-186 655.6 592 60.1
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 6.1e-186 654.8 583 61.6
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.3e-185 652.9 625 58.7
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 2.3e-185 652.9 578 63.5
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 2.3e-185 652.9 595 60.0
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.1e-185 652.5 596 60.4
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.2e-184 650.6 580 62.1
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.5e-184 650.2 588 61.4
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 2.6e-184 649.4 589 62.6
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 3.4e-184 649.0 581 61.4
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.3e-183 647.1 598 63.0
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.7e-183 646.7 587 62.0
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 2.2e-183 646.4 555 65.6
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 3.7e-183 645.6 594 59.8
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 3.7e-183 645.6 597 62.0
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.9e-183 645.2 582 59.8
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 8.3e-183 644.4 603 59.9
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.4e-182 643.7 591 63.1
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.4e-182 643.7 594 58.8
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 4.1e-182 642.1 590 60.3
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 5.4e-182 641.7 601 62.6
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 7.0e-182 641.3 586 59.4
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 7.8e-181 637.9 594 58.2
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 7.8e-181 637.9 610 58.0
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.0e-180 636.0 595 58.7
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 3.9e-180 635.6 590 60.2
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.6e-179 631.7 586 58.9
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.2e-178 630.6 548 65.9
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.2e-178 630.6 581 59.7
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 2.1e-178 629.8 664 57.7
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.6e-178 629.0 488 68.0
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 3.1e-177 625.9 569 59.9
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.8e-176 621.7 617 56.9
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.3e-175 620.5 487 69.0
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 8.3e-175 617.8 609 55.8
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.4e-174 617.1 563 62.2
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.2e-174 615.9 585 60.2
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 1.7e-172 610.1 537 62.0
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 8.6e-172 607.8 589 58.2
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 1.9e-171 606.7 582 58.2
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 3.3e-171 605.9 598 55.7
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 3.3e-171 605.9 578 60.0
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.2e-170 604.0 579 60.1
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.1e-170 603.2 591 59.9
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 8.1e-170 601.3 585 57.1
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.1e-169 600.9 586 60.1
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 5.2e-169 598.6 619 54.1
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.2e-169 598.6 602 58.3
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 7.5e-168 594.7 587 56.4
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 3.7e-167 592.4 599 54.8
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.4e-166 589.7 590 59.3
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.2e-165 587.4 640 52.7
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.6e-165 587.0 597 58.3
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.1e-165 586.6 654 52.1
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.1e-165 586.6 582 57.6
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 3.5e-165 585.9 596 56.0
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 7.8e-165 584.7 596 55.4
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 7.8e-165 584.7 642 52.6
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.7e-164 583.6 591 55.0
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 3.0e-164 582.8 613 53.7
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 3.9e-164 582.4 589 55.2
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 3.9e-164 582.4 597 55.9
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 6.6e-164 581.6 594 57.9
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.9e-163 580.1 591 54.8
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 3.3e-163 579.3 578 57.4
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 7.3e-163 578.2 584 57.5
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-162 577.4 589 55.7
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.2e-162 577.4 589 55.9
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.1e-162 576.6 597 55.3
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.8e-162 576.2 625 56.0
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.4e-161 573.9 559 57.4
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.2e-157 560.8 558 59.0
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 3.9e-156 555.8 548 56.2
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 8.7e-156 554.7 566 57.6
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.6e-155 551.2 483 63.1
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 4.0e-153 545.8 532 59.2
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.4e-152 542.7 480 61.9
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 3.8e-151 539.3 557 57.5
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.1e-150 537.7 554 55.2
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.9e-150 537.0 553 56.8
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.9e-147 526.9 560 54.6
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.1e-145 521.2 467 61.2
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 7.6e-144 515.0 591 51.9
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 5.6e-139 498.8 579 51.5
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 2.0e-136 490.3 448 62.1
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.7e-135 487.3 631 47.2
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 6.5e-135 485.3 584 51.0
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.2e-134 483.0 538 50.9
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.6e-130 470.7 554 50.5
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.1e-125 453.8 383 66.6
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 2.3e-124 450.3 554 47.8
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.4e-118 431.0 338 66.0
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.1e-117 427.2 439 55.1
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 2.4e-105 387.1 379 58.8
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.8e-98 363.6 315 61.9
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.6e-93 346.7 338 60.7
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 2.2e-90 337.4 631 36.3
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 2.0e-88 330.9 379 50.1
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 3.1e-68 263.8 269 59.5
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 3.9e-63 246.9 227 63.0
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 4.3e-62 243.4 163 74.8
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 3.2e-49 200.7 245 49.0
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 2.2e-42 177.9 138 68.8
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 5.4e-33 146.7 290 33.1
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 3.6e-29 134.0 167 49.7
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 3.4e-27 127.5 504 24.4
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 4.5e-27 127.1 449 24.7
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 1.0e-23 115.9 79 68.4
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 2.3e-23 114.8 146 47.3
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 2.5e-22 111.3 75 65.3
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 2.0e-19 101.7 71 71.8
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.9e-17 95.1 100 55.0
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 3.5e-16 90.9 65 73.8
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 7.9e-16 89.7 72 63.9
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 6.7e-15 86.7 83 59.0
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.3e-14 84.3 195 34.4
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 3.7e-13 80.9 61 65.6
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 3.4e-11 74.3 103 42.7
Glyma.20G064301 Glycine max HOM05D004045 ORTHO05D213272 1.1e-06 59.3 35 88.6
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 1.1e-06 59.3 36 75.0
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 3.3e-06 57.8 35 74.3


User provided reference genes

Program Settings