Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G062700 Glycine max HOM05D000041 ORTHO05D006140 5.7e-38 160.2 71 100.0
Glyma.04G165900 Glycine max HOM05D000041 ORTHO05D006140 1.7e-29 132.1 70 88.6
Glyma.06G196600 Glycine max HOM05D000041 ORTHO05D006140 1.9e-28 128.6 70 88.6
VMungo1309G2906 Vigna mungo HOM05D000041 ORTHO05D006140 3.2e-28 127.9 71 87.3
Lj1g0011184 Lotus japonicus HOM05D000041 ORTHO05D006140 1.6e-27 125.6 71 84.5
Phvul.009G185000 Phaseolus vulgaris HOM05D000041 ORTHO05D006140 2.7e-27 124.8 71 83.1
Lalb_Chr08g0235431 Lupinus albus HOM05D000041 ORTHO05D006140 3.5e-27 124.4 71 83.1
Ca_14694_v3 Cicer arietinum L. HOM05D000041 ORTHO05D006140 4.6e-27 124.0 71 83.1
Lalb_Chr11g0071711 Lupinus albus HOM05D000041 ORTHO05D006140 5.0e-26 120.6 71 80.3
Medtr3g037230 Medicago truncatula HOM05D000041 ORTHO05D006140 5.0e-26 120.6 71 80.3
RcHm_v2.0_Chr7g0182141 Rosa chinensis HOM05D000041 ORTHO05D006140 5.0e-26 120.6 71 77.5
Hund11349 Selenicereus undatus HOM05D000041 ORTHO05D006140 5.0e-26 120.6 71 76.1
Psat5g199640 Pisum sativum HOM05D000041 ORTHO05D006140 6.6e-26 120.2 71 78.9
FvH4_5g14510 Fragaria vesca HOM05D000041 ORTHO05D006140 1.1e-25 119.4 71 76.1
FAN18G2506 Fragaria x ananassa HOM05D000041 ORTHO05D006140 1.1e-25 119.4 71 76.1
ClCG06G016000 Citrullus lanatus HOM05D000041 ORTHO05D006140 1.9e-25 118.6 71 77.5
QL10p017885 Quercus lobata HOM05D000041 ORTHO05D006140 1.9e-25 118.6 71 74.6
Ciclev10020015m.g Citrus clementina HOM05D000041 ORTHO05D006140 2.5e-25 118.2 71 74.6
CsaV3_1G002560 Cucumis sativus L. HOM05D000041 ORTHO05D006140 2.5e-25 118.2 71 76.1
CiPaw.11G047400 Carya illinoinensis HOM05D000041 ORTHO05D006140 3.3e-25 117.9 71 76.1
PSO017G0721 Papaver somniferum HOM05D000041 ORTHO05D006140 3.3e-25 117.9 71 73.2
PSO478G5294 Papaver somniferum HOM05D000041 ORTHO05D000061 3.3e-25 117.9 71 73.2
Sed0001387 Sechium edule HOM05D000041 ORTHO05D006140 3.3e-25 117.9 71 74.6
Ah.02g113790 Amaranthus hybridus HOM05D000041 ORTHO05D006140 4.3e-25 117.5 71 76.1
MELO3C017192.2 Cucumis melo HOM05D000041 ORTHO05D006140 4.3e-25 117.5 71 74.6
MD14G1205300 Malus domestica HOM05D000041 ORTHO05D006140 4.3e-25 117.5 71 76.1
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 4.3e-25 117.5 71 78.9
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 7.3e-25 116.7 70 74.3
ECA247G0382 Erigeron canadensis HOM05D000041 ORTHO05D006140 9.5e-25 116.3 71 70.4
Potri.012G068100 Populus trichocarpa HOM05D000041 ORTHO05D006140 1.6e-24 115.5 70 71.4
Actinidia04865 Actinidia chinensis HOM05D000041 ORTHO05D006140 2.1e-24 115.2 71 71.8
Eucgr.B00542 Eucalyptus grandis HOM05D000041 ORTHO05D006140 2.8e-24 114.8 71 71.8
MD06G1197800 Malus domestica HOM05D000041 ORTHO05D006140 2.8e-24 114.8 70 77.1
Prupe.5G198700 Prunus persica HOM05D000041 ORTHO05D006140 2.8e-24 114.8 71 73.2
Thecc.03G094500 Theobroma cacao HOM05D000041 ORTHO05D006140 2.8e-24 114.8 71 76.1
HPP92_021256 Vanilla planifolia HOM05D000041 ORTHO05D006140 2.8e-24 114.8 71 70.4
FAN08G1333 Fragaria x ananassa HOM05D000041 ORTHO05D006140 3.6e-24 114.4 71 74.6
CANSAT80G0179 Cannabis sativa HOM05D000041 ORTHO05D006140 4.7e-24 114.0 70 74.3
EL10Ac5g11065 Beta vulgaris HOM05D000041 ORTHO05D006140 6.2e-24 113.6 70 72.9
CSS0043787 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D006140 6.2e-24 113.6 71 70.4
PGR083G0939 Punica granatum HOM05D000041 ORTHO05D006140 6.2e-24 113.6 71 73.2
Actinidia19018 Actinidia chinensis HOM05D000041 ORTHO05D006140 8.0e-24 113.2 71 70.4
Cpa.g.sc13.299 Carica papaya HOM05D000041 ORTHO05D006140 1.1e-23 112.8 71 73.2
Gohir.A07G070500 Gossypium hirsutum HOM05D000041 ORTHO05D006140 1.4e-23 112.5 71 71.8
Gohir.D07G075000 Gossypium hirsutum HOM05D000041 ORTHO05D006140 1.4e-23 112.5 71 71.8
Duzib205G1692 Durio zibethinus HOM05D000041 ORTHO05D006140 1.8e-23 112.1 71 71.8
Duzib084G1175 Durio zibethinus HOM05D000041 ORTHO05D006140 2.3e-23 111.7 71 70.4
HanXRQChr04g0107201 Helianthus annuus HOM05D000041 ORTHO05D006140 2.3e-23 111.7 70 70.0
TAR629G1015 Trochodendron aralioides HOM05D000041 ORTHO05D006140 2.3e-23 111.7 71 67.6
Dinv38747 Davidia involucrata HOM05D000041 ORTHO05D006140 3.1e-23 111.3 71 69.0
Lsat_1_v5_gn_1_14381 Lactuca sativa HOM05D000041 ORTHO05D006140 3.1e-23 111.3 71 67.6
Rhsim08G0152000 Rhododendron simsii HOM05D000041 ORTHO05D006140 3.1e-23 111.3 71 73.2
TWI60G1324 Tripterygium wilfordii HOM05D000041 ORTHO05D006140 3.1e-23 111.3 70 71.4
HanXRQChr08g0236771 Helianthus annuus HOM05D000041 ORTHO05D006140 4.0e-23 110.9 71 67.6
Hma1.2p1_0060F.1_g033480 Hydrangea macrophylla HOM05D000041 ORTHO05D000061 4.0e-23 110.9 70 68.6
Hma1.2p1_2933F.1_g330550 Hydrangea macrophylla HOM05D000041 ORTHO05D000061 4.0e-23 110.9 70 68.6
Zm00001eb020460 Zea mays HOM05D000041 ORTHO05D006140 4.0e-23 110.9 71 67.6
Rhsim12G0153700 Rhododendron simsii HOM05D000041 ORTHO05D006140 5.2e-23 110.5 70 68.6
Atru.chr9.344 Acer truncatum HOM05D000041 ORTHO05D006140 6.8e-23 110.2 70 70.0
CDE02G0410 Ceratophyllum demersum HOM05D000041 ORTHO05D006140 6.8e-23 110.2 70 70.0
Dinv10659 Davidia involucrata HOM05D000041 ORTHO05D006140 6.8e-23 110.2 71 69.0
GSVIVG01007961001 Vitis vinifera HOM05D000041 ORTHO05D006140 6.8e-23 110.2 71 70.4
Manes.14G081900 Manihot esculenta HOM05D000041 ORTHO05D006140 8.9e-23 109.8 70 70.0
Cc04_g14400 Coffea canephora HOM05D000041 ORTHO05D006140 1.2e-22 109.4 71 67.6
Lj5A107T101 Lonicera japonica HOM05D000041 ORTHO05D006140 1.2e-22 109.4 71 69.0
Nitab4.5_0001211g0200 Nicotiana tabacum HOM05D000041 ORTHO05D006140 1.2e-22 109.4 71 70.4
Nitab4.5_0002756g0120 Nicotiana tabacum HOM05D000041 ORTHO05D006140 1.2e-22 109.4 71 69.0
CDE04G1628 Ceratophyllum demersum HOM05D000041 ORTHO05D006140 1.5e-22 109.0 70 68.6
Lsat_1_v5_gn_5_21580 Lactuca sativa HOM05D000041 ORTHO05D006140 1.5e-22 109.0 71 66.2
vmacro17573 Vaccinium macrocarpon HOM05D000041 ORTHO05D006140 1.5e-22 109.0 70 70.0
Aqoxy3G03493 Aquilegia oxysepala HOM05D000041 ORTHO05D006140 2.0e-22 108.6 70 70.0
ECA246G3346 Erigeron canadensis HOM05D000041 ORTHO05D006140 3.4e-22 107.8 70 67.1
Sc04g0002810 Simmondsia chinensis HOM05D000041 ORTHO05D006140 3.4e-22 107.8 71 67.6
Solyc03g115720.3 Solanum lycopersicum HOM05D000041 ORTHO05D006140 3.4e-22 107.8 71 70.4
ATR0730G006 Amborella trichopoda HOM05D000041 ORTHO05D006140 4.4e-22 107.5 71 67.6
MSTRG.23000 Avicennia marina HOM05D000041 ORTHO05D006140 4.4e-22 107.5 70 67.1
CAN.G479.58 Capsicum annuum HOM05D000041 ORTHO05D006140 4.4e-22 107.5 71 70.4
Oeu052459.1 Olea europaea HOM05D000041 ORTHO05D006140 4.4e-22 107.5 71 66.2
Sopen03g034700 Solanum pennellii HOM05D000041 ORTHO05D006140 4.4e-22 107.5 71 69.0
Gorai.001G079100 Gossypium raimondii HOM05D000041 ORTHO05D006140 5.8e-22 107.1 71 70.4
TWI81G0058 Tripterygium wilfordii HOM05D000041 ORTHO05D006140 5.8e-22 107.1 70 71.4
vmacro16523 Vaccinium macrocarpon HOM05D000041 ORTHO05D006140 5.8e-22 107.1 71 64.8
DCAR_026036 Daucus carota HOM05D000041 ORTHO05D006140 7.5e-22 106.7 71 66.2
AT1G18660 Arabidopsis thaliana HOM05D000041 ORTHO05D006140 3.7e-21 104.4 71 66.2
AUR62021627 Chenopodium quinoa HOM05D000041 ORTHO05D006140 3.7e-21 104.4 63 76.2
Carub.0001s1829 Capsella rubella HOM05D000041 ORTHO05D006140 4.9e-21 104.0 71 66.2
AUR62008466 Chenopodium quinoa HOM05D000041 ORTHO05D006140 4.9e-21 104.0 63 76.2
AL1G31110 Arabidopsis lyrata HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
BcaB03g14492 Brassica carinata HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
BcaB07g31886 Brassica carinata HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
A06p14770 Brassica napus HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
A09p59780 Brassica napus HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
C08p43200 Brassica napus HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
BolC5t30395H Brassica oleracea HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
BolC8t51874H Brassica oleracea HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
BraA06t24600Z Brassica rapa HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
BraA09t41355Z Brassica rapa HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
Sp1g16630 Schrenkiella parvula HOM05D000041 ORTHO05D006140 6.4e-21 103.6 71 66.2
BcaC05g25761 Brassica carinata HOM05D000041 ORTHO05D006140 8.3e-21 103.2 71 64.8
C05p16920 Brassica napus HOM05D000041 ORTHO05D006140 8.3e-21 103.2 71 64.8
THA.LOC104813886 Tarenaya hassleriana HOM05D000041 ORTHO05D006140 8.3e-21 103.2 71 66.2
CARHR019290 Cardamine hirsuta HOM05D000041 ORTHO05D006140 1.4e-20 102.4 70 65.7
DCAR_016582 Daucus carota HOM05D000041 ORTHO05D006140 1.9e-20 102.1 71 64.8
Aa31LG7G3420 Aethionema arabicum HOM05D000041 ORTHO05D006140 2.4e-20 101.7 70 64.3
Thhalv10007493m.g Eutrema salsugineum HOM05D000041 ORTHO05D006140 3.2e-20 101.3 71 63.4
Pp3c15_14620 Physcomitrium patens HOM05D000041 ORTHO05D006140 5.4e-20 100.5 70 60.0
BcaC07g41312 Brassica carinata HOM05D000041 ORTHO05D006140 7.0e-20 100.1 71 63.4
COL.COLO4_36953 Corchorus olitorius HOM05D000041 ORTHO05D006140 2.7e-19 98.2 63 71.4
unitig_0.g773 Utricularia gibba HOM05D000041 ORTHO05D006140 1.0e-18 96.3 71 60.6
BcaC07g39990 Brassica carinata HOM05D000041 ORTHO05D006140 3.9e-18 94.4 77 58.4
Mapoly0007s0251 Marchantia polymorpha HOM05D000041 ORTHO05D006140 3.9e-18 94.4 69 55.1
AagrBONN_evm.TU.Sc2ySwM_344.2038 Anthoceros agrestis HOM05D000041 ORTHO05D006140 1.5e-17 92.4 77 54.5
Migut.I00214 Erythranthe guttata HOM05D000041 ORTHO05D006140 1.9e-17 92.0 60 61.7
Peaxi162Scf00274g00349 Petunia axillaris HOM05D000041 ORTHO05D006140 1.6e-16 89.0 106 45.3
Lj9A467T86 Lonicera japonica HOM05D000041 ORTHO05D006140 5.2e-15 84.0 86 48.8
SEGI_30138 Sequoiadendron giganteum HOM05D000041 ORTHO05D006140 2.6e-14 81.6 59 64.4
MBI16_g06793_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D006140 1.7e-10 68.9 42 71.4
Nn4g23280 Nelumbo nucifera HOM05D000041 ORTHO05D006140 1.7e-10 68.9 44 68.2
Haze_07657 Corylus avellana HOM05D000041 ORTHO05D006140 3.9e-10 67.8 41 75.6
MCO11G242 Micromonas commoda HOM05D000041 ORTHO05D006140 5.1e-10 67.4 70 47.1
CSS0039287 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D006140 4.3e-09 64.3 42 69.0
C08p32020 Brassica napus HOM05D000041 ORTHO05D006140 1.2e-08 62.8 44 65.9
Prupe.4G066700 Prunus persica HOM05D000041 ORTHO05D006140 6.2e-08 60.5 47 63.8
arahy.Tifrunner.gnm1.ann1.C7Z6YQ Arachis hypogaea HOM05D000041 ORTHO05D006140 8.1e-08 60.1 71 49.3
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 5.8e-06 53.9 62 38.7
FAN13G2854 Fragaria x ananassa HOM05D000041 ORTHO05D006140 7.6e-06 53.5 29 79.3


User provided reference genes

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