Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G057900 Glycine max HOM05D003092 ORTHO05D015679 5.4e-50 200.7 100 100.0
Glyma.12G022300 Glycine max HOM05D003092 ORTHO05D003977 3.6e-46 188.0 96 96.9
Glyma.19G055966 Glycine max HOM05D003092 ORTHO05D015679 2.0e-44 182.2 96 93.8
Glyma.11G096200 Glycine max HOM05D003092 ORTHO05D003977 3.7e-43 177.9 96 89.6
Phvul.011G024300 Phaseolus vulgaris HOM05D003092 ORTHO05D003977 5.1e-40 167.5 96 86.5
VMungo1127G0189 Vigna mungo HOM05D003092 ORTHO05D003977 6.2e-38 160.6 96 81.2
Medtr4g076100 Medicago truncatula HOM05D003092 ORTHO05D003977 2.2e-35 152.1 96 76.0
Dinv18426 Davidia involucrata HOM05D003092 ORTHO05D003977 1.4e-34 149.4 95 74.7
Ca_11243_v3 Cicer arietinum L. HOM05D003092 ORTHO05D003977 3.2e-34 148.3 96 77.1
Dinv24691 Davidia involucrata HOM05D003092 ORTHO05D003977 4.2e-34 147.9 95 73.7
CSS0021585 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 6.0e-33 144.1 95 71.6
Rhsim04G0084500 Rhododendron simsii HOM05D003092 ORTHO05D003977 6.0e-33 144.1 95 73.7
TPR.G21260 Trifolium pratense HOM05D003092 ORTHO05D003977 1.0e-32 143.3 94 73.4
Psat7g179360 Pisum sativum HOM05D003092 ORTHO05D003977 2.3e-32 142.1 94 75.5
Atru.chr8.993 Acer truncatum HOM05D003092 ORTHO05D003977 3.0e-32 141.7 95 70.5
Lj3g0000609 Lotus japonicus HOM05D003092 ORTHO05D003977 5.1e-32 141.0 96 76.0
TAR629G1366 Trochodendron aralioides HOM05D003092 ORTHO05D003977 2.5e-31 138.7 95 68.4
Hma1.2p1_0758F.1_g213520 Hydrangea macrophylla HOM05D003092 ORTHO05D003977 3.3e-31 138.3 95 66.3
Eucgr.K01341 Eucalyptus grandis HOM05D003092 ORTHO05D003977 4.3e-31 137.9 100 70.0
Lalb_Chr01g0001161 Lupinus albus HOM05D003092 ORTHO05D003977 4.3e-31 137.9 94 69.1
CSS0037687 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 7.3e-31 137.1 89 71.9
QL04p061990 Quercus lobata HOM05D003092 ORTHO05D003977 9.6e-31 136.7 95 67.4
Haze_13641 Corylus avellana HOM05D003092 ORTHO05D003977 1.3e-30 136.3 95 68.4
QL04p061858 Quercus lobata HOM05D003092 ORTHO05D003977 2.8e-30 135.2 95 66.3
Sed0028086 Sechium edule HOM05D003092 ORTHO05D003977 2.8e-30 135.2 90 70.0
MD09G1139200 Malus domestica HOM05D003092 ORTHO05D003977 3.6e-30 134.8 95 68.4
CiPaw.04G073100 Carya illinoinensis HOM05D003092 ORTHO05D003977 1.4e-29 132.9 93 67.7
arahy.Tifrunner.gnm1.ann1.IE54UT Arachis hypogaea HOM05D003092 ORTHO05D003977 1.8e-29 132.5 92 70.7
arahy.Tifrunner.gnm1.ann1.K82IJI Arachis hypogaea HOM05D003092 ORTHO05D003977 1.8e-29 132.5 92 70.7
Gohir.D11G163100 Gossypium hirsutum HOM05D003092 ORTHO05D003977 2.4e-29 132.1 94 69.1
Gorai.007G173800 Gossypium raimondii HOM05D003092 ORTHO05D003977 2.4e-29 132.1 94 69.1
Medtr4g016770 Medicago truncatula HOM05D003092 ORTHO05D015679 2.4e-29 132.1 100 68.0
TPR.G35755 Trifolium pratense HOM05D003092 ORTHO05D003977 3.1e-29 131.7 80 75.0
TAR629G1309 Trochodendron aralioides HOM05D003092 ORTHO05D003977 5.3e-29 131.0 95 68.4
MBI18_g11470_MAGBIO Magnolia biondii HOM05D003092 ORTHO05D003977 6.9e-29 130.6 96 66.7
Nn7g38238 Nelumbo nucifera HOM05D003092 ORTHO05D003977 6.9e-29 130.6 93 66.7
CANSAT64G1584 Cannabis sativa HOM05D003092 ORTHO05D003977 9.0e-29 130.2 96 63.5
Gohir.A11G156000 Gossypium hirsutum HOM05D003092 ORTHO05D003977 9.0e-29 130.2 94 68.1
Thecc.01G172800 Theobroma cacao HOM05D003092 ORTHO05D003977 1.2e-28 129.8 94 67.0
GSVIVG01015824001 Vitis vinifera HOM05D003092 ORTHO05D003977 1.2e-28 129.8 95 61.1
MSTRG.14878 Avicennia marina HOM05D003092 ORTHO05D003977 1.5e-28 129.4 93 68.8
Duzib133G0324 Durio zibethinus HOM05D003092 ORTHO05D003977 1.5e-28 129.4 94 68.1
Prupe.3G186500 Prunus persica HOM05D003092 ORTHO05D003977 1.5e-28 129.4 95 68.4
Migut.M00096 Erythranthe guttata HOM05D003092 ORTHO05D003977 2.0e-28 129.0 93 68.8
Ciclev10011509m.g Citrus clementina HOM05D003092 ORTHO05D003977 2.6e-28 128.6 93 67.7
Sabra06G0014400 Salix brachista HOM05D003092 ORTHO05D003977 2.6e-28 128.6 93 67.7
Cpa.g.sc8.291 Carica papaya HOM05D003092 ORTHO05D003977 3.4e-28 128.3 91 70.3
Potri.016G018500 Populus trichocarpa HOM05D003092 ORTHO05D003977 7.6e-28 127.1 91 70.3
Cc05_g00030 Coffea canephora HOM05D003092 ORTHO05D003977 9.9e-28 126.7 92 67.4
MD17G1128700 Malus domestica HOM05D003092 ORTHO05D003977 9.9e-28 126.7 95 65.3
Potri.006G020900 Populus trichocarpa HOM05D003092 ORTHO05D003977 1.3e-27 126.3 91 70.3
Duzib138G1254 Durio zibethinus HOM05D003092 ORTHO05D003977 2.2e-27 125.6 94 66.0
SGA_v2.0_scaffold73G24428 Striga asiatica HOM05D003092 ORTHO05D003977 2.2e-27 125.6 93 67.7
SGA_v2.0_scaffold181G39738 Striga asiatica HOM05D003092 ORTHO05D003977 6.4e-27 124.0 87 70.1
Sabra16G0025300 Salix brachista HOM05D003092 ORTHO05D003977 8.4e-27 123.6 91 69.2
PGR142G2785 Punica granatum HOM05D003092 ORTHO05D003977 1.1e-26 123.2 94 63.8
MELO3C026404.2 Cucumis melo HOM05D003092 ORTHO05D003977 1.9e-26 122.5 94 62.8
CsaV3_4G032320 Cucumis sativus L. HOM05D003092 ORTHO05D003977 2.4e-26 122.1 94 62.8
CDE06G0430 Ceratophyllum demersum HOM05D003092 ORTHO05D003977 3.2e-26 121.7 95 61.1
MELO3C032583.2 Cucumis melo HOM05D003092 ORTHO05D003977 1.2e-25 119.8 96 60.4
CsaV3_4G007370 Cucumis sativus L. HOM05D003092 ORTHO05D003977 1.2e-25 119.8 90 63.3
CAN.G816.9 Capsicum annuum HOM05D003092 ORTHO05D003977 2.7e-25 118.6 87 66.7
Sed0024474 Sechium edule HOM05D003092 ORTHO05D003977 3.5e-25 118.2 96 59.4
Nitab4.5_0005023g0050 Nicotiana tabacum HOM05D003092 ORTHO05D003977 4.6e-25 117.9 96 59.4
Sc03g0006060 Simmondsia chinensis HOM05D003092 ORTHO05D003977 4.6e-25 117.9 95 64.2
PGSC0003DMG400024275 Solanum tuberosum HOM05D003092 ORTHO05D003977 6.0e-25 117.5 94 63.8
FAN02G1300 Fragaria x ananassa HOM05D003092 ORTHO05D003977 7.8e-25 117.1 95 60.0
Nitab4.5_0002015g0020 Nicotiana tabacum HOM05D003092 ORTHO05D003977 7.8e-25 117.1 92 63.0
Peaxi162Scf00047g02452 Petunia axillaris HOM05D003092 ORTHO05D003977 7.8e-25 117.1 87 65.5
ATR0752G155 Amborella trichopoda HOM05D003092 ORTHO05D003977 1.0e-24 116.7 75 73.3
Solyc12g006450.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.0e-24 116.7 87 64.4
Sopen12g002390 Solanum pennellii HOM05D003092 ORTHO05D003977 1.0e-24 116.7 87 64.4
HanXRQChr14g0446441 Helianthus annuus HOM05D003092 ORTHO05D003977 1.3e-24 116.3 84 65.5
Lj7C141T9 Lonicera japonica HOM05D003092 ORTHO05D003977 1.3e-24 116.3 98 61.2
ClCG07G010930 Citrullus lanatus HOM05D003092 ORTHO05D003977 1.7e-24 115.9 96 60.4
PSO541G1731 Papaver somniferum HOM05D003092 ORTHO05D003977 2.3e-24 115.5 94 61.7
PSO675G5899 Papaver somniferum HOM05D003092 ORTHO05D003977 3.0e-24 115.2 94 60.6
FAN05G2188 Fragaria x ananassa HOM05D003092 ORTHO05D003977 3.9e-24 114.8 95 60.0
SalBow7G2525 Salvia bowleyana HOM05D003092 ORTHO05D003977 3.9e-24 114.8 87 63.2
Nitab4.5_0000170g0430 Nicotiana tabacum HOM05D003092 ORTHO05D003977 5.1e-24 114.4 89 61.8
Peaxi162Scf00047g02451 Petunia axillaris HOM05D003092 ORTHO05D003977 6.6e-24 114.0 76 72.4
RcHm_v2.0_Chr2g0153591 Rosa chinensis HOM05D003092 ORTHO05D003977 6.6e-24 114.0 95 61.1
TWI60G0778 Tripterygium wilfordii HOM05D003092 ORTHO05D003977 6.6e-24 114.0 89 66.3
HPP92_014204 Vanilla planifolia HOM05D003092 ORTHO05D003977 6.6e-24 114.0 77 71.4
HPP92_026462 Vanilla planifolia HOM05D003092 ORTHO05D003977 6.6e-24 114.0 77 71.4
vmacro09169 Vaccinium macrocarpon HOM05D003092 ORTHO05D003977 8.7e-24 113.6 94 61.7
FvH4_6g39530 Fragaria vesca HOM05D003092 ORTHO05D003977 1.5e-23 112.8 95 57.9
FAN02G3818 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.5e-23 112.8 95 57.9
FAN09G3380 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.5e-23 112.8 95 57.9
FAN14G1111 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.5e-23 112.8 95 57.9
CANSAT64G2744 Cannabis sativa HOM05D003092 ORTHO05D003977 1.9e-23 112.5 88 63.6
ECA238G0264 Erigeron canadensis HOM05D003092 ORTHO05D003977 1.9e-23 112.5 78 69.2
Nitab4.5_0002232g0040 Nicotiana tabacum HOM05D003092 ORTHO05D003977 1.9e-23 112.5 89 60.7
GSVIVG01015821001 Vitis vinifera HOM05D003092 ORTHO05D003977 1.9e-23 112.5 86 61.6
Os08g0205900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 2.5e-23 112.1 77 68.8
Peaxi162Scf00393g00517 Petunia axillaris HOM05D003092 ORTHO05D003977 3.3e-23 111.7 86 61.6
Zm00001eb171190 Zea mays HOM05D003092 ORTHO05D003977 7.3e-23 110.5 54 87.0
Lsat_1_v5_gn_2_64281 Lactuca sativa HOM05D003092 ORTHO05D003977 1.6e-22 109.4 79 67.1
FAN14G2664 Fragaria x ananassa HOM05D003092 ORTHO05D003977 2.1e-22 109.0 90 58.9
Os04g0614600 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 2.1e-22 109.0 54 85.2
Zm00001eb430840 Zea mays HOM05D003092 ORTHO05D003977 2.1e-22 109.0 64 71.9
DCAR_001912 Daucus carota HOM05D003092 ORTHO05D003977 2.8e-22 108.6 111 53.2
Zm00001eb070860 Zea mays HOM05D003092 ORTHO05D003977 3.6e-22 108.2 64 71.9
Solyc07g043310.3 Solanum lycopersicum HOM05D003092 ORTHO05D003977 4.8e-22 107.8 89 59.6
Sopen07g022870 Solanum pennellii HOM05D003092 ORTHO05D003977 6.2e-22 107.5 89 59.6
THA.LOC104803008 Tarenaya hassleriana HOM05D003092 ORTHO05D003977 6.2e-22 107.5 77 71.4
HanXRQChr08g0214751 Helianthus annuus HOM05D003092 ORTHO05D003977 1.1e-21 106.7 54 85.2
PGSC0003DMG400011754 Solanum tuberosum HOM05D003092 ORTHO05D003977 1.1e-21 106.7 89 59.6
ECA233G1959 Erigeron canadensis HOM05D003092 ORTHO05D003977 1.4e-21 106.3 76 67.1
Hund04375 Selenicereus undatus HOM05D003092 ORTHO05D003977 1.8e-21 105.9 95 60.0
CAN.G352.66 Capsicum annuum HOM05D003092 ORTHO05D003977 2.4e-21 105.5 74 66.2
EL10Ac6g15348 Beta vulgaris HOM05D003092 ORTHO05D003977 4.0e-21 104.8 83 61.4
Thhalv10020531m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 4.0e-21 104.8 58 77.6
Zm00001eb134040 Zea mays HOM05D003092 ORTHO05D015679 4.0e-21 104.8 67 71.6
Lj7C139T4 Lonicera japonica HOM05D003092 ORTHO05D003977 5.3e-21 104.4 53 83.0
AL3G36410 Arabidopsis lyrata HOM05D003092 ORTHO05D003977 9.0e-21 103.6 78 62.8
Lsat_1_v5_gn_8_37700 Lactuca sativa HOM05D003092 ORTHO05D003977 1.2e-20 103.2 98 57.1
Os04g0614500 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 1.2e-20 103.2 77 61.0
CARHR098090 Cardamine hirsuta HOM05D003092 ORTHO05D003977 2.0e-20 102.4 94 57.4
AUR62003531 Chenopodium quinoa HOM05D003092 ORTHO05D003977 2.0e-20 102.4 90 58.9
TPR.G16133 Trifolium pratense HOM05D003092 ORTHO05D003977 2.0e-20 102.4 103 56.3
Aqoxy1G01441_Aqoxy1G01442 Aquilegia oxysepala HOM05D003092 ORTHO05D003977 4.5e-20 101.3 75 68.0
A05p26600 Brassica napus HOM05D003092 ORTHO05D003977 4.5e-20 101.3 93 57.0
BraA05t21535Z Brassica rapa HOM05D003092 ORTHO05D003977 4.5e-20 101.3 93 57.0
Manes.08G069100 Manihot esculenta HOM05D003092 ORTHO05D003977 4.5e-20 101.3 48 91.7
Zm00001eb339140 Zea mays HOM05D003092 ORTHO05D015679 4.5e-20 101.3 63 68.3
Aa31LG8G8760 Aethionema arabicum HOM05D003092 ORTHO05D003977 5.8e-20 100.9 77 64.9
BcaB04g20537 Brassica carinata HOM05D003092 ORTHO05D003977 5.8e-20 100.9 93 55.9
Ah.03g147600 Amaranthus hybridus HOM05D003092 ORTHO05D003977 9.9e-20 100.1 53 81.1
A01p32960 Brassica napus HOM05D003092 ORTHO05D003977 9.9e-20 100.1 95 58.9
Thhalv10020563m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 9.9e-20 100.1 94 56.4
AT3G22200 Arabidopsis thaliana HOM05D003092 ORTHO05D003977 1.3e-19 99.8 74 63.5
BcaB06g26322 Brassica carinata HOM05D003092 ORTHO05D003977 1.3e-19 99.8 98 51.0
BcaC09g49157 Brassica carinata HOM05D003092 ORTHO05D003977 1.3e-19 99.8 77 64.9
C01p42030 Brassica napus HOM05D003092 ORTHO05D003977 1.3e-19 99.8 77 64.9
BolC1t04162H Brassica oleracea HOM05D003092 ORTHO05D003977 1.3e-19 99.8 83 59.0
Gohir.D08G060900 Gossypium hirsutum HOM05D003092 ORTHO05D003977 1.7e-19 99.4 53 81.1
Sed0019858 Sechium edule HOM05D003092 ORTHO05D003977 1.7e-19 99.4 103 55.3
Actinidia35161 Actinidia chinensis HOM05D003092 ORTHO05D003977 2.9e-19 98.6 51 82.4
Aa31LG9G2310 Aethionema arabicum HOM05D003092 ORTHO05D003977 2.9e-19 98.6 58 74.1
PGSC0003DMG400025228 Solanum tuberosum HOM05D003092 ORTHO05D003977 2.9e-19 98.6 54 83.3
Gohir.A08G051200 Gossypium hirsutum HOM05D003092 ORTHO05D003977 3.8e-19 98.2 53 79.2
Sabra16G0020500 Salix brachista HOM05D003092 ORTHO05D003977 3.8e-19 98.2 48 91.7
Zm00001eb093190 Zea mays HOM05D003092 ORTHO05D015679 3.8e-19 98.2 52 80.8
A05p26630 Brassica napus HOM05D003092 ORTHO05D003977 4.9e-19 97.8 68 66.2
BraA05t21538Z Brassica rapa HOM05D003092 ORTHO05D003977 4.9e-19 97.8 68 66.2
Gorai.004G063100 Gossypium raimondii HOM05D003092 ORTHO05D003977 4.9e-19 97.8 53 79.2
Solyc08g014610.4 Solanum lycopersicum HOM05D003092 ORTHO05D003977 4.9e-19 97.8 54 81.5
Sopen08g005600 Solanum pennellii HOM05D003092 ORTHO05D003977 4.9e-19 97.8 54 81.5
BcaC05g28095 Brassica carinata HOM05D003092 ORTHO05D003977 6.4e-19 97.4 54 77.8
C05p41220 Brassica napus HOM05D003092 ORTHO05D003977 6.4e-19 97.4 54 77.8
BolC5t32860H Brassica oleracea HOM05D003092 ORTHO05D003977 6.4e-19 97.4 54 77.8
Carub.0003s2237 Capsella rubella HOM05D003092 ORTHO05D003977 6.4e-19 97.4 94 52.1
Oeu021138.3 Olea europaea HOM05D003092 ORTHO05D003977 6.4e-19 97.4 48 89.6
Sp3g20000 Schrenkiella parvula HOM05D003092 ORTHO05D003977 6.4e-19 97.4 94 54.3
AUR62003530 Chenopodium quinoa HOM05D003092 ORTHO05D003977 8.4e-19 97.1 70 61.4
CAN.G339.12 Capsicum annuum HOM05D003092 ORTHO05D003977 1.1e-18 96.7 53 81.1
MELO3C016238.2 Cucumis melo HOM05D003092 ORTHO05D003977 1.1e-18 96.7 90 52.2
Zm00001eb091810 Zea mays HOM05D003092 ORTHO05D015679 1.4e-18 96.3 49 81.6
Cfa023523 Carpinus fangiana HOM05D003092 ORTHO05D003977 1.9e-18 95.9 48 87.5
AUR62017844 Chenopodium quinoa HOM05D003092 ORTHO05D003977 1.9e-18 95.9 92 52.2
CsaV3_4G007380 Cucumis sativus L. HOM05D003092 ORTHO05D003977 2.4e-18 95.5 90 51.1
Lalb_Chr19g0139621 Lupinus albus HOM05D003092 ORTHO05D015679 3.2e-18 95.1 71 63.4
Lj1C1040T2 Lonicera japonica HOM05D003092 ORTHO05D003977 4.2e-18 94.7 78 64.1
Zm00001eb187830 Zea mays HOM05D003092 ORTHO05D015679 4.2e-18 94.7 48 83.3
Lalb_Chr19g0139651 Lupinus albus HOM05D003092 ORTHO05D015679 5.4e-18 94.4 85 57.6
Zm00001eb361930 Zea mays HOM05D003092 ORTHO05D015679 1.2e-17 93.2 49 79.6
Mapoly0160s0020 Marchantia polymorpha HOM05D003092 ORTHO05D003977 1.6e-17 92.8 78 60.3
DCAR_029734 Daucus carota HOM05D003092 ORTHO05D003977 7.9e-17 90.5 55 70.9
Sopen12g002410 Solanum pennellii HOM05D003092 ORTHO05D003977 1.8e-16 89.4 54 72.2
Solyc12g006470.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 5.1e-16 87.8 54 70.4
Os02g0112900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 8.7e-16 87.0 61 65.6
SMO115G0307 Selaginella moellendorffii HOM05D003092 ORTHO05D003977 1.9e-15 85.9 50 72.0
BcaB06g26323 Brassica carinata HOM05D003092 ORTHO05D003977 5.6e-15 84.3 83 51.8
Lalb_Chr19g0139631 Lupinus albus HOM05D003092 ORTHO05D003977 8.1e-14 80.5 71 57.7
Pp3c1_32910 Physcomitrium patens HOM05D003092 ORTHO05D003977 1.1e-13 80.1 50 72.0
Pp3c6_25350 Physcomitrium patens HOM05D003092 ORTHO05D003977 1.1e-13 80.1 75 52.0
Zm00001eb307840 Zea mays HOM05D003092 ORTHO05D015679 5.8e-12 74.3 42 73.8
AagrBONN_evm.TU.Sc2ySwM_368.2355 Anthoceros agrestis HOM05D003092 ORTHO05D003977 1.0e-11 73.6 89 44.9
CBR_g20310 Chara braunii HOM05D003092 ORTHO05D000301 2.1e-09 65.9 50 58.0
AUR62017846 Chenopodium quinoa HOM05D003092 ORTHO05D003977 2.5e-07 58.9 65 52.3


User provided reference genes

Program Settings