Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 1.4e-201 706.1 351 100.0
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 3.5e-160 568.5 341 80.6
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 5.7e-155 551.2 340 77.4
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.9e-151 538.9 339 77.0
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.9e-151 538.9 339 77.0
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.9e-151 538.9 339 77.0
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 3.8e-151 538.5 339 76.7
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 6.5e-151 537.7 343 77.0
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 8.5e-151 537.3 340 77.1
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.1e-150 537.0 339 76.7
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 1.5e-150 536.6 339 76.1
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 1.9e-150 536.2 337 76.0
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 1.9e-150 536.2 339 76.4
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 3.2e-150 535.4 339 76.4
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 4.2e-150 535.0 336 76.8
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 7.2e-150 534.3 339 76.1
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 7.2e-150 534.3 339 75.5
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 7.2e-150 534.3 349 74.5
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 9.4e-150 533.9 339 76.1
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.2e-149 533.5 339 76.1
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 1.2e-149 533.5 339 75.8
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 1.2e-149 533.5 339 76.1
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 2.1e-149 532.7 343 76.1
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 2.1e-149 532.7 339 75.2
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 2.1e-149 532.7 339 76.1
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 4.7e-149 531.6 342 74.9
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 4.7e-149 531.6 345 74.5
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 4.7e-149 531.6 339 74.3
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 6.1e-149 531.2 335 75.2
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 8.0e-149 530.8 339 74.9
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 8.0e-149 530.8 336 76.2
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 8.0e-149 530.8 340 75.0
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.0e-148 530.4 339 73.7
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 1.0e-148 530.4 338 76.0
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 1.4e-148 530.0 336 75.6
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.4e-148 530.0 338 76.0
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 1.4e-148 530.0 337 75.4
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 1.4e-148 530.0 337 75.4
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 1.4e-148 530.0 341 74.5
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 1.8e-148 529.6 340 75.3
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 1.8e-148 529.6 336 75.0
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.8e-148 529.6 339 74.0
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 1.8e-148 529.6 339 74.9
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 2.3e-148 529.3 339 75.5
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.3e-148 529.3 339 75.8
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 2.3e-148 529.3 339 76.4
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 2.3e-148 529.3 339 73.7
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 2.3e-148 529.3 339 74.3
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 3.0e-148 528.9 340 75.0
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 3.0e-148 528.9 339 74.9
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 3.0e-148 528.9 335 75.2
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 4.0e-148 528.5 342 74.9
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 4.0e-148 528.5 339 74.6
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 4.0e-148 528.5 339 75.8
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 4.0e-148 528.5 340 75.0
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 5.2e-148 528.1 342 74.0
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 5.2e-148 528.1 337 75.7
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 5.2e-148 528.1 339 74.6
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 6.8e-148 527.7 340 75.0
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 8.8e-148 527.3 339 73.7
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 8.8e-148 527.3 339 75.2
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 8.8e-148 527.3 339 75.2
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 1.2e-147 526.9 339 74.3
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 1.2e-147 526.9 339 76.1
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 1.5e-147 526.6 340 74.7
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 1.5e-147 526.6 339 74.0
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 2.0e-147 526.2 338 74.9
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 2.0e-147 526.2 335 75.5
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 2.6e-147 525.8 342 74.6
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.6e-147 525.8 339 74.6
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 3.4e-147 525.4 340 74.4
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 4.4e-147 525.0 339 75.8
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 4.4e-147 525.0 338 75.7
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 7.5e-147 524.2 336 74.7
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 9.8e-147 523.9 339 73.5
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 9.8e-147 523.9 339 75.5
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.3e-146 523.5 339 74.9
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 2.2e-146 522.7 341 73.0
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 2.2e-146 522.7 339 73.2
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 2.8e-146 522.3 334 73.7
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 2.8e-146 522.3 336 74.7
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 4.8e-146 521.5 338 72.8
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 4.8e-146 521.5 335 73.4
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 1.1e-145 520.4 339 73.2
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.4e-145 520.0 333 75.1
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 1.8e-145 519.6 333 75.1
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 1.8e-145 519.6 339 74.3
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 2.4e-145 519.2 327 76.1
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 2.4e-145 519.2 320 76.9
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 3.1e-145 518.8 339 72.9
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 3.1e-145 518.8 337 74.2
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 1.6e-144 516.5 339 74.0
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 2.0e-144 516.2 327 74.6
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 2.0e-144 516.2 332 74.4
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 3.5e-144 515.4 335 73.4
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 4.5e-144 515.0 339 72.3
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 7.7e-144 514.2 350 71.1
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 1.0e-143 513.8 335 72.5
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 2.9e-143 512.3 339 73.2
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 3.8e-143 511.9 340 72.1
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 5.0e-143 511.5 339 72.9
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 8.6e-143 510.8 327 73.7
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.1e-142 510.4 335 72.8
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 1.5e-142 510.0 376 66.5
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 3.3e-142 508.8 335 72.8
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 4.7e-141 505.0 362 68.2
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 8.0e-141 504.2 343 73.5
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.6e-139 499.2 315 75.6
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 3.7e-138 495.4 327 73.1
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 3.7e-138 495.4 353 69.4
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 4.1e-137 491.9 336 72.0
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 5.9e-136 488.0 316 75.0
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 1.1e-134 483.8 367 65.9
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 6.1e-133 478.0 313 73.2
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 2.6e-131 472.6 394 61.7
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.2e-128 463.8 312 72.1
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 9.5e-126 454.1 336 66.4
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 6.2e-125 451.4 317 69.4
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.6e-109 400.2 333 61.3
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 1.8e-108 396.7 252 75.0
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 2.6e-107 392.9 239 78.2
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 9.9e-107 391.0 251 74.9
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 9.3e-105 384.4 249 75.9
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 3.6e-101 372.5 234 75.6
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 7.6e-99 364.8 336 56.5
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.1e-97 360.9 248 70.2
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 6.0e-96 355.1 316 58.9
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 8.1e-93 344.7 194 85.1
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 1.1e-92 344.4 219 74.4
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 1.4e-92 344.0 208 79.8
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 5.3e-92 342.0 326 57.1
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 2.0e-91 340.1 217 73.7
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 6.2e-85 318.5 320 54.1
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 1.5e-83 313.9 200 75.0
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.3e-79 300.8 192 72.9
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 2.8e-77 293.1 242 62.4
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 1.2e-75 287.7 195 70.8
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.4e-68 263.5 171 71.9
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 7.4e-54 215.3 145 69.0
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 9.7e-54 214.9 135 79.3
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 7.7e-51 205.3 155 65.8
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 6.7e-47 192.2 149 64.4
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 9.4e-33 145.2 96 74.0
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 1.5e-30 137.9 86 76.7
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 2.8e-29 133.7 86 75.6
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 3.7e-29 133.3 103 60.2
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 4.5e-27 126.3 101 66.3
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 7.7e-27 125.6 104 56.7
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 5.0e-26 122.9 73 74.0
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 8.0e-24 115.5 78 66.7
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 1.4e-23 114.8 83 63.9
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 1.7e-21 107.8 89 60.7
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 6.6e-18 95.9 127 47.2
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 9.5e-17 92.0 293 27.6
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 6.2e-16 89.4 316 22.5
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 1.4e-15 88.2 124 47.6
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.8e-15 87.8 232 28.0
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 8.9e-15 85.5 281 28.5
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 1.5e-14 84.7 73 58.9
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 1.3e-13 81.6 263 30.4
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.9e-13 80.5 92 43.5
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 3.7e-13 80.1 108 41.7
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 6.6e-10 69.3 53 66.0
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.1e-08 64.3 103 41.7
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 4.0e-07 60.1 42 69.0


User provided reference genes

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