Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 8.1e-69 264.2 203 100.0
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 4.6e-64 248.4 204 93.1
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 6.0e-64 248.1 207 93.2
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.2e-61 240.4 203 75.9
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.2e-61 240.4 204 71.6
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 2.4e-60 236.1 204 78.4
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.5e-59 233.4 206 77.2
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 5.8e-59 231.5 206 77.2
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 3.2e-57 225.7 127 92.9
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 3.2e-57 225.7 127 92.9
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 7.1e-57 224.6 235 68.5
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 2.7e-56 222.6 218 70.2
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.7e-55 219.9 204 76.5
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 3.0e-55 219.2 206 69.4
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 3.9e-55 218.8 212 75.5
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 5.1e-55 218.4 126 91.3
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.5e-54 216.9 210 73.3
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 4.3e-54 215.3 127 89.8
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 9.6e-54 214.2 221 71.5
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 9.6e-54 214.2 221 71.5
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.1e-53 213.0 221 63.3
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 3.6e-53 212.2 126 88.9
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.1e-52 210.7 213 63.4
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.1e-52 210.7 205 70.2
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.8e-52 209.9 127 85.8
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.8e-52 209.9 211 64.0
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.8e-52 209.9 212 85.4
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.8e-52 209.9 127 87.4
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 1.8e-52 209.9 223 71.3
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 3.1e-52 209.1 127 86.6
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 4.0e-52 208.8 215 62.3
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 4.0e-52 208.8 203 67.5
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 4.0e-52 208.8 127 85.8
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 5.3e-52 208.4 214 62.1
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 6.9e-52 208.0 212 65.1
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 6.9e-52 208.0 210 69.0
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 9.0e-52 207.6 216 63.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 9.0e-52 207.6 214 65.0
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.2e-51 207.2 127 85.0
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.2e-51 207.2 127 85.0
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.2e-51 207.2 210 64.8
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.5e-51 206.8 126 84.9
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.5e-51 206.8 215 66.5
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 2.0e-51 206.5 215 63.3
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 2.6e-51 206.1 208 62.5
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.6e-51 206.1 213 84.0
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 5.8e-51 204.9 125 84.8
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 5.8e-51 204.9 213 72.3
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 9.9e-51 204.1 122 86.9
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 9.9e-51 204.1 210 62.4
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.3e-50 203.8 201 73.6
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.2e-50 203.0 214 61.7
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.2e-50 203.0 212 62.3
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 6.4e-50 201.4 223 67.7
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 8.4e-50 201.1 127 81.9
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 8.4e-50 201.1 212 61.8
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 8.4e-50 201.1 211 77.3
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.1e-49 200.7 211 71.1
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.1e-49 200.7 211 71.1
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.4e-49 200.3 209 62.2
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 1.9e-49 199.9 211 58.8
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.4e-49 199.5 220 66.4
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.4e-49 199.5 206 59.7
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 3.2e-49 199.1 127 81.9
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 5.4e-49 198.4 126 84.1
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 7.1e-49 198.0 211 60.7
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 9.3e-49 197.6 209 61.7
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.2e-48 197.2 127 80.3
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.2e-48 197.2 126 83.3
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.6e-48 196.8 206 61.2
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 2.7e-48 196.1 209 59.3
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.5e-48 195.7 212 59.9
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.5e-48 195.7 212 63.7
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 6.0e-48 194.9 126 77.8
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 7.9e-48 194.5 206 60.2
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.3e-47 193.7 127 78.0
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.7e-47 193.4 127 79.5
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.7e-47 193.4 127 79.5
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.7e-47 193.4 126 79.4
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 2.3e-47 193.0 162 67.9
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.3e-47 193.0 128 78.1
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 2.3e-47 193.0 127 80.3
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.9e-47 192.2 124 81.5
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.9e-47 192.2 126 79.4
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.7e-47 191.0 126 79.4
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 8.7e-47 191.0 209 60.3
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.1e-46 190.7 208 60.1
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.9e-46 189.9 212 56.1
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.3e-45 187.2 124 79.8
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.3e-45 187.2 233 50.6
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.6e-45 186.8 120 80.8
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.6e-45 186.8 124 76.6
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-45 186.4 127 74.8
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.8e-45 186.0 205 60.5
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.8e-45 186.0 126 75.4
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 2.8e-45 186.0 127 74.8
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.6e-45 185.7 127 74.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.6e-45 185.7 127 74.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 3.6e-45 185.7 200 60.5
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 6.2e-45 184.9 209 56.5
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 8.1e-45 184.5 127 74.0
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 8.1e-45 184.5 185 73.5
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.8e-44 183.3 126 74.6
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 6.9e-44 181.4 130 76.9
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 6.9e-44 181.4 127 72.4
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.2e-43 180.6 125 72.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.2e-43 180.6 125 72.8
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.5e-43 180.3 125 72.0
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 3.4e-43 179.1 125 72.0
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 3.4e-43 179.1 211 56.4
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 2.9e-42 176.0 192 57.3
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 8.4e-42 174.5 106 85.8
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 3.2e-41 172.6 202 53.5
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 2.1e-37 159.8 212 50.0
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.8e-37 159.5 125 68.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 4.0e-36 155.6 204 49.5
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 2.0e-35 153.3 160 65.6
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 2.0e-35 153.3 203 49.8
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.6e-35 152.9 125 61.6
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 2.6e-35 152.9 95 81.1
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.6e-35 152.9 101 79.2
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.4e-35 152.5 98 81.6
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.4e-35 152.5 125 64.0
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.7e-34 150.2 84 94.0
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.8e-34 149.1 127 66.1
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.4e-33 147.1 109 75.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 2.5e-33 146.4 126 61.1
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 4.2e-33 145.6 210 45.2
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 4.2e-33 145.6 210 45.2
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.6e-32 143.7 203 50.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-32 143.3 127 62.2
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.0e-31 141.0 108 66.7
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-31 140.6 131 59.5
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 2.3e-31 139.8 215 42.3
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 5.1e-31 138.7 191 54.5
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 8.7e-31 137.9 129 60.5
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-30 137.1 133 57.1
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 9.6e-30 134.4 84 83.3
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.3e-29 131.7 168 56.0
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 8.2e-29 131.3 84 81.0
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 3.1e-28 129.4 128 56.2
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 4.1e-28 129.0 127 59.8
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 3.8e-26 122.5 103 61.2
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.9e-24 114.8 82 75.6
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 3.3e-22 109.4 138 49.3
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.9e-18 96.3 146 52.1
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-17 94.0 79 64.6
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 3.2e-17 92.8 87 55.2
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 7.9e-16 88.2 137 50.4
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 5.7e-14 82.0 48 83.3
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.3e-13 80.9 135 48.1
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 4.1e-12 75.9 65 58.5
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 4.1e-12 75.9 41 82.9
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.2e-11 74.3 88 43.2
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.6e-11 73.2 37 89.2
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.6e-08 63.9 98 34.7
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 3.6e-08 62.8 51 64.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 6.1e-08 62.0 94 42.6
arahy.Tifrunner.gnm1.ann1.W2JFNW Arachis hypogaea HOM05D004341 ORTHO05D005075 5.1e-07 58.9 34 79.4
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 2.0e-06 57.0 46 63.0


User provided reference genes

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