Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 5.1e-80 303.5 149 100.0
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 5.7e-63 246.9 149 79.9
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 1.2e-60 239.2 141 80.9
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 5.7e-55 220.3 144 75.0
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 2.0e-52 211.8 144 72.2
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 2.5e-50 204.9 132 74.2
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 8.0e-49 199.9 132 75.0
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 8.0e-49 199.9 132 75.0
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 1.8e-48 198.7 132 72.7
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 2.3e-48 198.4 148 65.5
TPR.G14143 Trifolium pratense HOM05D006926 ORTHO05D008863 4.0e-48 197.6 144 67.4
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 1.4e-45 189.1 144 65.3
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 9.1e-45 186.4 143 62.9
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 3.5e-44 184.5 132 65.9
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 7.7e-44 183.3 132 67.4
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 5.0e-43 180.6 143 60.8
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 5.0e-43 180.6 143 60.1
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 6.5e-43 180.3 139 61.2
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 1.5e-42 179.1 143 60.8
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 1.5e-42 179.1 143 60.8
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 1.5e-42 179.1 143 60.8
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 1.9e-42 178.7 131 65.6
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 2.5e-42 178.3 132 63.6
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 5.5e-42 177.2 132 63.6
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 9.5e-42 176.4 131 63.4
FAN17G0573 Fragaria x ananassa HOM05D006926 ORTHO05D008863 2.1e-41 175.3 132 61.4
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 2.1e-41 175.3 143 58.7
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 2.7e-41 174.9 132 61.4
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 3.6e-41 174.5 124 62.9
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 3.6e-41 174.5 124 62.9
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 6.1e-41 173.7 143 58.7
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 8.0e-41 173.3 134 61.2
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 1.0e-40 172.9 129 64.3
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 1.0e-40 172.9 132 61.4
TAR365G0466 Trochodendron aralioides HOM05D006926 ORTHO05D008863 1.0e-40 172.9 133 62.4
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 1.4e-40 172.6 124 62.1
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 3.0e-40 171.4 132 62.1
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 4.0e-40 171.0 132 59.8
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 6.8e-40 170.2 126 63.5
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 8.8e-40 169.9 126 63.5
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 8.8e-40 169.9 126 63.5
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 1.2e-39 169.5 126 64.3
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 2.6e-39 168.3 143 57.3
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 4.4e-39 167.5 132 58.3
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 4.4e-39 167.5 138 59.4
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 5.7e-39 167.2 138 59.4
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 9.8e-39 166.4 138 58.7
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 1.3e-38 166.0 126 63.5
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 4.9e-38 164.1 137 55.5
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 4.9e-38 164.1 138 58.7
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 6.3e-38 163.7 130 56.9
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 1.4e-37 162.5 118 62.7
AT3G06920 Arabidopsis thaliana HOM05D006926 ORTHO05D008863 3.1e-37 161.4 140 54.3
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 3.1e-37 161.4 126 61.9
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 4.1e-37 161.0 142 54.2
AL3G18040 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 5.4e-37 160.6 140 55.0
AL3G18070 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 5.4e-37 160.6 140 55.0
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 5.4e-37 160.6 140 55.0
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 7.0e-37 160.2 133 57.1
AL159U10010 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 9.2e-37 159.8 140 55.0
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 9.2e-37 159.8 148 52.0
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 9.2e-37 159.8 140 54.3
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 3.5e-36 157.9 123 60.2
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 4.5e-36 157.5 132 53.8
Cc01_g06580 Coffea canephora HOM05D006926 ORTHO05D008863 7.7e-36 156.8 132 53.0
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 2.3e-35 155.2 121 60.3
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 2.3e-35 155.2 136 55.1
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 8.6e-35 153.3 131 51.1
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 1.5e-34 152.5 149 49.7
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 3.3e-34 151.4 143 51.7
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 3.3e-34 151.4 121 62.8
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 4.3e-34 151.0 131 51.9
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 5.6e-34 150.6 126 55.6
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 9.5e-34 149.8 145 49.7
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 9.5e-34 149.8 121 57.9
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 1.6e-33 149.1 122 52.5
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 2.1e-33 148.7 120 55.8
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 3.6e-33 147.9 146 50.0
Nn6g34671 Nelumbo nucifera HOM05D006926 ORTHO05D008863 3.6e-33 147.9 132 55.3
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 4.7e-33 147.5 125 53.6
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 6.1e-33 147.1 129 55.0
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 1.4e-32 146.0 118 54.2
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 1.8e-32 145.6 120 55.0
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 2.3e-32 145.2 126 52.4
Nn2g14325 Nelumbo nucifera HOM05D006926 ORTHO05D008863 2.3e-32 145.2 135 52.6
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 3.0e-32 144.8 142 48.6
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 4.0e-32 144.4 129 51.2
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 1.2e-31 142.9 137 48.9
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 2.0e-31 142.1 120 55.0
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 2.2e-30 138.7 141 50.4
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 3.7e-30 137.9 129 48.8
SalBow1G7679 Salvia bowleyana HOM05D006926 ORTHO05D008863 6.4e-30 137.1 126 48.4
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 4.1e-29 134.4 124 50.0
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 4.1e-29 134.4 141 47.5
SGA_v2.0_scaffold67G22630 Striga asiatica HOM05D006926 ORTHO05D008863 1.0e-27 129.8 118 50.8
HPP92_015997 Vanilla planifolia HOM05D006926 ORTHO05D008863 2.3e-24 118.6 117 45.3
Eucgr.B01739 Eucalyptus grandis HOM05D006926 ORTHO05D008863 9.8e-23 113.2 80 61.2
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 5.4e-21 107.5 107 51.4
CDE11G0294 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 2.3e-19 102.1 118 39.8
TAR365G0845 Trochodendron aralioides HOM05D006926 ORTHO05D008863 9.8e-15 86.7 47 87.2
CDE01G0787 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 2.9e-14 85.1 117 35.0
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 6.4e-14 84.0 47 85.1
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 4.6e-12 77.8 47 80.9
Dinv26449 Davidia involucrata HOM05D006926 ORTHO05D008863 3.0e-11 75.1 48 75.0
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 1.9e-10 72.4 47 74.5
Lsat_1_v5_gn_8_31281 Lactuca sativa HOM05D006926 ORTHO05D008863 2.5e-10 72.0 46 69.6
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 4.3e-10 71.2 46 71.7
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 9.5e-10 70.1 44 75.0
Lju237C0G7 Lonicera japonica HOM05D002460 ORTHO05D002716 1.4e-08 66.2 135 29.6
AL3G11810 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 2.3e-08 65.5 135 28.1
AT3G02490 Arabidopsis thaliana HOM05D002460 ORTHO05D002716 2.3e-08 65.5 135 27.4
CARHR076470 Cardamine hirsuta HOM05D002460 ORTHO05D002716 2.3e-08 65.5 135 27.4
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 2.3e-08 65.5 120 31.7
Carub.0003s0159 Capsella rubella HOM05D002460 ORTHO05D002716 4.0e-08 64.7 135 28.1
BcaC01g04555 Brassica carinata HOM05D002460 ORTHO05D002716 5.2e-08 64.3 135 28.1
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 6.8e-08 63.9 140 28.6
Sp3g01530 Schrenkiella parvula HOM05D002460 ORTHO05D002716 1.2e-07 63.2 135 26.7
Cc04_g03210 Coffea canephora HOM05D000424 ORTHO05D002854 1.5e-07 62.8 146 30.1
Ca_14278_v3 Cicer arietinum L. HOM05D002460 ORTHO05D002716 2.0e-07 62.4 147 25.9
Sopen03g031280 Solanum pennellii HOM05D002460 ORTHO05D002716 2.0e-07 62.4 146 25.3
VMungo1215G0531 Vigna mungo HOM05D002460 ORTHO05D002716 2.6e-07 62.0 148 23.0
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 3.4e-07 61.6 150 24.0
Lj3P875T45 Lonicera japonica HOM05D000424 ORTHO05D000355 4.4e-07 61.2 146 26.0
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 4.4e-07 61.2 124 27.4
TAR629G3196 Trochodendron aralioides HOM05D002460 ORTHO05D002716 4.4e-07 61.2 115 28.7
Potri.015G084800 Populus trichocarpa HOM05D002460 ORTHO05D002716 5.8e-07 60.8 145 25.5
PGSC0003DMG400018187 Solanum tuberosum HOM05D002460 ORTHO05D002716 5.8e-07 60.8 150 22.7
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 7.6e-07 60.5 128 27.3
Ciclev10011236m.g Citrus clementina HOM05D002460 ORTHO05D002716 7.6e-07 60.5 135 27.4
Carub.0005s1442 Capsella rubella HOM05D002460 ORTHO05D002716 9.9e-07 60.1 152 27.0
Glyma.10G264500 Glycine max HOM05D000424 ORTHO05D000355 9.9e-07 60.1 115 27.8
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 9.9e-07 60.1 118 29.7
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 9.9e-07 60.1 118 29.7
VMungo1215G2415 Vigna mungo HOM05D002460 ORTHO05D002716 9.9e-07 60.1 145 24.1
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.3e-06 59.7 127 28.3
Carub.0006s1417 Capsella rubella HOM05D002460 ORTHO05D002716 1.3e-06 59.7 120 25.8
CAN.G911.26 Capsicum annuum HOM05D006596 ORTHO05D008497 1.3e-06 59.7 129 24.0
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.3e-06 59.7 123 29.3
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.3e-06 59.7 116 29.3
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 1.3e-06 59.7 116 30.2
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.3e-06 59.7 126 28.6
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.7e-06 59.3 128 26.6
Mapoly0050s0075 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.7e-06 59.3 99 30.3
Sp6g28140 Schrenkiella parvula HOM05D002460 ORTHO05D002716 1.7e-06 59.3 115 26.1
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 1.7e-06 59.3 126 27.8
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 2.2e-06 58.9 114 26.3
CiPaw.07G116900 Carya illinoinensis HOM05D000424 ORTHO05D002854 2.2e-06 58.9 145 29.7
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 2.2e-06 58.9 118 26.3
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 2.2e-06 58.9 116 28.4
Pp3c2_27580 Physcomitrium patens HOM05D006926 ORTHO05D002107 2.2e-06 58.9 138 28.3
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.2e-06 58.9 118 28.8
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 2.9e-06 58.5 151 25.8
ECA247G0350 Erigeron canadensis HOM05D002460 ORTHO05D002716 2.9e-06 58.5 121 29.8
Phvul.003G205400 Phaseolus vulgaris HOM05D002460 ORTHO05D002716 2.9e-06 58.5 133 22.6
SalBow3G1009 Salvia bowleyana HOM05D006740 ORTHO05D008571 2.9e-06 58.5 114 27.2
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 2.9e-06 58.5 118 27.1
Aa31LG11G13630 Aethionema arabicum HOM05D002460 ORTHO05D002716 3.8e-06 58.2 120 26.7
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 3.8e-06 58.2 129 25.6
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 3.8e-06 58.2 124 28.2
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 4.9e-06 57.8 123 27.6
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 4.9e-06 57.8 91 31.9
MD16G1030100 Malus domestica HOM05D000424 ORTHO05D000355 4.9e-06 57.8 114 28.1
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 4.9e-06 57.8 146 26.0
Nitab4.5_0003215g0040 Nicotiana tabacum HOM05D006740 ORTHO05D008571 4.9e-06 57.8 114 26.3
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 4.9e-06 57.8 99 28.3
AT5G15980 Arabidopsis thaliana HOM05D002460 ORTHO05D002716 6.4e-06 57.4 115 25.2
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 6.4e-06 57.4 144 23.6
Solyc01g097130.4 Solanum lycopersicum HOM05D000424 ORTHO05D002854 6.4e-06 57.4 149 26.8
arahy.Tifrunner.gnm1.ann1.U08DU4 Arachis hypogaea HOM05D002460 ORTHO05D002716 8.4e-06 57.0 147 25.2
CAN.G134.73 Capsicum annuum HOM05D000424 ORTHO05D002854 8.4e-06 57.0 123 30.1
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 8.4e-06 57.0 137 24.8
SalBow3G2352 Salvia bowleyana HOM05D006740 ORTHO05D008571 8.4e-06 57.0 114 27.2
Sp5g00960 Schrenkiella parvula HOM05D000424 ORTHO05D002854 8.4e-06 57.0 148 26.4
Sed0021384 Sechium edule HOM05D006926 ORTHO05D008863 8.4e-06 57.0 44 61.4
SEGI_24878 Sequoiadendron giganteum HOM05D006926 ORTHO05D008863 8.4e-06 57.0 69 36.2
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 8.4e-06 57.0 114 26.3
Sopen01g040810 Solanum pennellii HOM05D000424 ORTHO05D002854 8.4e-06 57.0 140 27.1
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 8.4e-06 57.0 114 26.3
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 8.4e-06 57.0 114 26.3
PGSC0003DMG400027516 Solanum tuberosum HOM05D000424 ORTHO05D002854 8.4e-06 57.0 140 27.9


User provided reference genes

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