Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 4.0e-61 238.0 130 100.0
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 1.1e-47 193.4 140 76.4
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 4.1e-42 174.9 149 69.1
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 7.0e-42 174.1 149 69.1
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 9.5e-31 137.1 132 61.4
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 3.6e-30 135.2 153 54.9
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 3.1e-29 132.1 141 56.7
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 2.6e-28 129.0 160 51.2
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 3.3e-23 112.1 87 66.7
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.8e-21 106.3 151 44.4
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.8e-21 106.3 128 52.3
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 1.8e-21 106.3 110 54.5
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 1.8e-21 106.3 101 55.4
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 2.4e-21 105.9 129 48.8
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 4.0e-21 105.1 66 77.3
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.0e-21 105.1 66 77.3
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.0e-21 105.1 66 77.3
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 8.9e-21 104.0 66 75.8
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 8.9e-21 104.0 66 75.8
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.2e-20 103.6 80 67.5
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 3.4e-20 102.1 104 57.7
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 4.4e-20 101.7 139 44.6
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.3e-19 100.1 96 56.2
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 1.7e-19 99.8 130 45.4
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 2.2e-19 99.4 68 72.1
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 2.9e-19 99.0 102 56.9
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 4.9e-19 98.2 64 73.4
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 4.9e-19 98.2 101 57.4
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.4e-18 96.7 95 54.7
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 4.2e-18 95.1 135 44.4
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 7.1e-18 94.4 69 66.7
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 9.2e-18 94.0 110 51.8
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 3.5e-17 92.0 73 60.3
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 3.5e-17 92.0 82 59.8
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 7.8e-17 90.9 91 52.7
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 1.0e-16 90.5 83 60.2
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.0e-16 90.5 100 49.0
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.3e-16 90.1 91 51.6
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.3e-16 90.1 91 51.6
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.3e-16 90.1 65 66.2
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 1.3e-16 90.1 65 66.2
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 1.3e-16 90.1 87 56.3
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 1.7e-16 89.7 61 73.8
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.7e-16 89.7 101 49.5
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 2.3e-16 89.4 91 52.7
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 2.3e-16 89.4 88 48.9
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 3.0e-16 89.0 69 59.4
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 3.0e-16 89.0 91 51.6
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 3.0e-16 89.0 91 51.6
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 3.9e-16 88.6 91 51.6
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 3.9e-16 88.6 91 51.6
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 3.9e-16 88.6 91 51.6
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 3.9e-16 88.6 91 51.6
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 3.9e-16 88.6 91 51.6
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.9e-16 88.6 110 44.5
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 6.6e-16 87.8 88 51.1
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 6.6e-16 87.8 88 51.1
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 6.6e-16 87.8 88 51.1
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 6.6e-16 87.8 63 68.3
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 6.6e-16 87.8 66 66.7
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 6.6e-16 87.8 66 62.1
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.1e-15 87.0 108 49.1
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.1e-15 87.0 108 49.1
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.5e-15 85.9 64 65.6
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 3.3e-15 85.5 87 52.9
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 4.3e-15 85.1 66 63.6
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 4.3e-15 85.1 58 72.4
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 5.6e-15 84.7 89 55.1
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 5.6e-15 84.7 89 55.1
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 5.6e-15 84.7 89 55.1
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 5.6e-15 84.7 89 55.1
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 5.6e-15 84.7 64 67.2
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 7.3e-15 84.3 54 74.1
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 9.6e-15 84.0 89 49.4
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 9.6e-15 84.0 89 55.1
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 9.6e-15 84.0 88 52.3
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.3e-14 83.6 88 48.9
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 1.3e-14 83.6 88 48.9
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 1.6e-14 83.2 109 45.0
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 2.8e-14 82.4 91 50.5
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 3.6e-14 82.0 89 51.7
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.6e-14 82.0 61 59.0
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 4.8e-14 81.6 88 46.6
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 6.2e-14 81.3 59 59.3
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 6.2e-14 81.3 58 62.1
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 8.1e-14 80.9 89 46.1
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 8.1e-14 80.9 89 46.1
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 8.1e-14 80.9 89 50.6
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-13 80.5 101 47.5
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.4e-13 80.1 63 61.9
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 1.4e-13 80.1 61 62.3
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 1.4e-13 80.1 61 63.9
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 3.1e-13 79.0 91 50.5
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 3.1e-13 79.0 69 58.0
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 3.1e-13 79.0 61 60.7
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 4.0e-13 78.6 98 51.0
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.5e-12 76.6 106 41.5
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.5e-12 76.6 69 56.5
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.0e-12 76.3 89 49.4
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 4.4e-12 75.1 66 57.6
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 5.8e-12 74.7 79 46.8
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 5.8e-12 74.7 79 46.8
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 5.8e-12 74.7 79 46.8
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 2.2e-11 72.8 51 70.6
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 3.8e-11 72.0 59 57.6
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 4.9e-11 71.6 105 41.9
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 4.9e-11 71.6 55 63.6
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 4.9e-11 71.6 55 63.6
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 5.4e-10 68.2 84 46.4
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 3.9e-08 62.0 93 38.7
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 8.7e-08 60.8 65 47.7
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 3.3e-07 58.9 74 47.3
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 9.6e-07 57.4 53 54.7
HPP92_017321 Vanilla planifolia HOM05D008443 ORTHO05D010587 1.3e-06 57.0 72 45.8
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 2.1e-06 56.2 48 56.2
Psat2g015840 Pisum sativum HOM05D006973 ORTHO05D322763 2.8e-06 55.8 59 62.7
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 3.6e-06 55.5 44 56.8
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 6.2e-06 54.7 48 50.0
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 6.2e-06 54.7 75 37.3
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 8.1e-06 54.3 49 53.1


User provided reference genes

Program Settings