Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 7.2e-245 850.1 422 100.0
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 1.1e-168 597.0 346 87.9
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 3.8e-161 572.0 344 83.1
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 7.1e-160 567.8 354 81.1
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 9.6e-141 504.2 356 72.5
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 2.1e-140 503.1 358 72.3
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 5.3e-139 498.4 348 71.6
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.2e-138 497.3 339 73.5
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 1.5e-138 496.9 339 73.5
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 7.6e-138 494.6 342 73.1
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 2.2e-137 493.0 346 72.0
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.8e-137 492.3 342 72.8
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 6.5e-137 491.5 344 71.8
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 1.9e-136 490.0 343 70.6
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 7.1e-136 488.0 341 72.1
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 1.2e-135 487.3 340 73.5
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 3.9e-134 482.3 346 70.8
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.7e-134 481.5 344 70.1
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.7e-134 481.5 344 70.1
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 8.7e-134 481.1 357 69.2
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.5e-133 480.3 340 70.3
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.5e-133 480.3 354 70.1
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 4.3e-133 478.8 354 69.5
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 7.4e-133 478.0 347 69.5
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 7.4e-133 478.0 346 70.2
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 9.7e-133 477.6 341 71.0
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 1.6e-132 476.9 367 68.4
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 2.8e-132 476.1 348 68.7
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 6.3e-132 474.9 358 68.4
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 8.2e-132 474.6 348 69.8
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 5.3e-131 471.9 347 69.2
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 5.3e-131 471.9 349 69.3
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.5e-130 470.3 347 70.3
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 2.0e-130 469.9 347 68.6
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 3.4e-130 469.2 346 68.2
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 4.5e-130 468.8 342 68.7
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 2.9e-129 466.1 359 68.2
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 1.1e-128 464.2 350 68.0
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 1.9e-128 463.4 357 66.9
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 2.5e-128 463.0 349 68.8
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.2e-128 462.2 345 67.8
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 5.5e-128 461.8 348 67.8
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 9.3e-128 461.1 361 67.0
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.2e-127 460.7 343 67.9
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 2.1e-127 459.9 349 67.6
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 2.1e-127 459.9 355 67.6
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 2.7e-127 459.5 350 68.3
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 6.1e-127 458.4 336 70.2
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.9e-127 458.0 343 69.1
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 1.0e-126 457.6 353 68.8
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 1.4e-126 457.2 355 65.9
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.4e-126 457.2 345 68.7
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 3.9e-126 455.7 342 69.3
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 3.9e-126 455.7 365 66.3
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 1.9e-125 453.4 345 68.1
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.5e-125 453.0 342 69.0
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 2.5e-125 453.0 350 67.7
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 4.3e-125 452.2 340 68.5
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 4.3e-125 452.2 348 67.8
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 5.7e-125 451.8 341 68.0
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 5.7e-125 451.8 341 68.0
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 5.7e-125 451.8 348 67.0
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 7.4e-125 451.4 358 65.6
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 6.3e-124 448.4 348 67.8
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.1e-123 447.6 355 64.5
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 1.4e-123 447.2 355 65.1
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.4e-123 447.2 340 69.7
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.4e-123 446.4 338 68.9
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 2.4e-123 446.4 342 66.7
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 2.4e-123 446.4 351 66.4
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 4.1e-123 445.7 346 64.7
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 4.1e-123 445.7 358 64.2
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 4.1e-123 445.7 340 69.1
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 5.3e-123 445.3 355 64.5
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 6.9e-123 444.9 344 66.0
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 6.9e-123 444.9 364 63.7
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.5e-122 443.7 350 64.9
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 2.0e-122 443.4 336 67.3
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 3.4e-122 442.6 340 65.6
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 4.5e-122 442.2 341 66.9
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 7.7e-122 441.4 348 66.1
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 1.0e-121 441.0 337 67.4
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.3e-121 440.7 352 65.9
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 1.3e-121 440.7 356 65.7
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 1.7e-121 440.3 357 63.9
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 2.2e-121 439.9 357 63.6
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 2.9e-121 439.5 347 65.4
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 5.0e-121 438.7 348 64.7
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 8.5e-121 438.0 356 64.0
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.1e-120 437.6 345 64.1
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.1e-120 437.6 343 66.5
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.1e-120 437.6 343 65.3
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 3.2e-120 436.0 344 64.8
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 4.2e-120 435.6 343 66.2
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 1.2e-119 434.1 342 65.8
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 1.6e-119 433.7 344 64.2
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 2.7e-119 433.0 344 65.4
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.6e-119 432.6 351 63.2
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 4.7e-119 432.2 346 65.3
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.4e-118 430.6 346 63.0
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 3.9e-118 429.1 356 63.5
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 6.7e-118 428.3 325 67.7
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.4e-115 419.9 361 63.2
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 1.5e-114 417.2 369 61.2
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 2.2e-113 413.3 321 65.4
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 2.9e-113 412.9 345 61.2
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 6.5e-113 411.8 346 61.6
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.2e-112 409.1 336 61.9
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.6e-111 407.1 312 67.9
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 3.6e-111 406.0 337 62.6
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 5.2e-110 402.1 353 60.3
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 3.3e-109 399.4 309 69.3
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 3.7e-108 396.0 339 59.3
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 1.6e-106 390.6 367 58.3
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 4.5e-106 389.0 343 58.0
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 4.5e-106 389.0 336 61.6
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.4e-102 377.5 313 64.9
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 2.6e-101 373.2 303 65.0
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 1.3e-100 370.9 364 54.9
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 8.2e-100 368.2 362 54.7
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.8e-99 367.1 336 57.1
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 4.1e-99 365.9 364 53.6
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 7.7e-98 361.7 338 55.9
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 6.5e-97 358.6 364 52.5
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 2.5e-96 356.7 339 56.3
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 7.2e-96 355.1 341 56.6
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 1.6e-95 354.0 361 52.4
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 2.1e-95 353.6 343 55.1
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.3e-92 344.4 352 52.8
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 8.3e-92 341.7 352 54.0
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.8e-91 340.5 341 54.0
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 3.5e-90 336.3 339 53.4
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.7e-89 334.0 341 52.8
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.7e-89 334.0 363 52.1
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 3.3e-88 329.7 351 51.0
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 3.6e-87 326.2 402 49.8
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 4.9e-84 315.8 329 52.3
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 9.2e-83 311.6 252 67.1
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 3.5e-82 309.7 334 49.4
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 2.9e-81 306.6 368 49.5
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.0e-81 305.8 296 56.8
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 4.7e-79 299.3 364 46.2
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 1.8e-78 297.4 364 46.7
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 6.8e-78 295.4 238 67.2
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 8.9e-78 295.0 365 46.0
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 6.4e-76 288.9 354 48.3
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 3.3e-72 276.6 336 46.4
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 7.3e-72 275.4 289 52.6
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 8.9e-70 268.5 246 60.2
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 4.4e-69 266.2 285 51.9
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.2e-61 241.5 333 43.2
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 5.8e-61 239.2 198 62.1
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 2.0e-53 214.2 143 69.2
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.5e-50 203.4 203 57.1
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.5e-50 203.4 203 57.1
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.5e-50 203.4 203 57.1
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 3.1e-46 190.3 300 46.0
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.5e-32 144.8 118 62.7
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 2.8e-31 140.6 79 79.7
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 4.8e-31 139.8 84 78.6
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 8.1e-31 139.0 89 68.5
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 5.3e-30 136.3 84 76.2
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.8e-29 132.9 84 73.8
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.9e-27 127.9 124 54.8
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.9e-27 127.9 124 54.8
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.2e-26 125.2 117 57.3
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.2e-26 125.2 117 57.3
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.2e-26 125.2 117 57.3
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 2.1e-26 124.4 75 76.0
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 1.8e-25 121.3 133 49.6
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 1.5e-21 108.2 115 51.3
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 4.2e-19 100.1 140 47.1
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 7.9e-18 95.9 135 43.0
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 5.7e-16 89.7 100 52.0
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.0e-12 79.0 50 74.0
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.6e-10 71.6 137 40.9
FAN10G3644 Fragaria x ananassa HOM05D003673 ORTHO05D025527 2.1e-10 71.2 137 40.1
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 4.6e-10 70.1 40 72.5
FAN25G1183 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.4e-09 68.6 127 41.7
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.8e-09 68.2 137 40.1
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 6.7e-09 66.2 45 66.7
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.8e-07 60.1 49 57.1
FvH4_6g00910 Fragaria vesca HOM05D003673 ORTHO05D025527 8.2e-07 59.3 131 32.8


User provided reference genes

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