Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.4e-212 741.9 371 100.0
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.0e-182 642.5 378 86.8
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.1e-180 636.7 352 90.6
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.2e-179 633.3 373 86.6
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.0e-178 630.2 385 84.4
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 5.3e-175 617.8 370 85.9
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 6.9e-175 617.5 353 87.3
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.8e-173 611.7 368 84.2
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 7.1e-172 607.4 372 83.9
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.1e-171 605.9 369 85.4
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.8e-162 576.2 352 82.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.5e-161 572.4 348 82.8
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 3.3e-161 572.0 349 82.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.3e-161 571.6 366 79.5
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.1e-159 567.0 351 80.9
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.4e-159 566.6 349 81.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.2e-158 563.5 351 80.1
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 5.8e-158 561.2 349 81.9
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.7e-157 559.7 349 81.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 6.5e-157 557.8 351 79.5
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 8.4e-157 557.4 351 79.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.1e-156 557.0 348 80.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.9e-156 556.2 348 80.5
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 9.3e-156 553.9 351 78.9
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 9.3e-156 553.9 351 78.9
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.2e-155 553.5 348 80.2
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.7e-155 552.4 351 78.6
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.5e-155 552.0 347 79.0
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.5e-155 552.0 354 79.4
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 4.6e-155 551.6 348 78.7
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.3e-154 549.3 352 78.4
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.1e-153 547.0 352 79.0
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.5e-153 546.6 348 78.2
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.9e-153 546.2 350 78.0
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.9e-153 546.2 348 78.7
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.3e-152 543.5 347 78.7
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.8e-152 542.3 351 76.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.4e-151 539.3 346 78.9
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-150 537.0 382 72.5
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.5e-150 536.6 327 82.6
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 4.5e-150 535.0 347 78.1
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 2.9e-149 532.3 358 75.1
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 3.8e-149 531.9 365 74.8
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 8.4e-149 530.8 330 81.8
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.4e-148 530.0 350 76.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.5e-148 529.3 352 76.1
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.2e-148 527.7 350 76.6
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 9.3e-148 527.3 355 75.2
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.6e-147 526.6 354 75.1
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.7e-147 525.8 354 75.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.8e-146 523.1 327 80.1
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.3e-146 522.7 364 73.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.3e-146 522.7 349 75.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.3e-146 522.7 350 76.6
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 5.1e-146 521.5 353 74.2
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 6.7e-146 521.2 351 75.2
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 6.7e-146 521.2 356 75.6
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.5e-145 520.0 350 75.1
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.3e-144 516.9 358 72.9
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.2e-144 516.2 348 75.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.8e-144 515.8 354 74.0
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 6.3e-144 514.6 351 73.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.1e-143 513.8 345 74.2
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.8e-143 513.1 361 72.3
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 4.1e-143 511.9 270 95.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.3e-143 511.5 335 75.5
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 6.9e-143 511.1 382 70.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.4e-142 508.8 351 73.8
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 4.5e-142 508.4 362 72.1
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.7e-141 506.5 307 83.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.8e-141 505.4 344 73.3
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 6.5e-141 504.6 329 77.5
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.2e-140 501.9 338 74.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.2e-140 501.9 348 74.4
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 9.4e-140 500.7 404 66.1
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.6e-139 500.0 378 68.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.1e-139 498.0 334 76.0
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.4e-138 496.9 355 70.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.0e-138 495.7 348 72.4
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.1e-138 495.0 347 73.2
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 3.7e-136 488.8 323 74.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 3.7e-136 488.8 332 74.4
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.4e-135 486.9 339 71.7
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.4e-135 486.9 328 75.6
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 6.9e-135 484.6 326 73.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.5e-134 481.9 326 71.5
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.3e-133 480.3 330 73.6
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.7e-133 479.9 344 68.3
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.9e-133 479.2 358 68.4
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.8e-133 478.8 332 72.9
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.5e-132 476.1 342 68.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 2.5e-132 476.1 347 68.6
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.2e-132 475.7 345 68.1
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 3.2e-132 475.7 349 70.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.2e-132 475.7 326 72.1
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 4.2e-132 475.3 345 68.1
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.2e-132 475.3 342 72.2
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 9.4e-132 474.2 328 70.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 9.4e-132 474.2 333 70.3
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.2e-131 473.8 333 70.3
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.6e-131 473.4 346 68.2
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.1e-131 473.0 345 67.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.7e-131 472.6 326 70.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 3.6e-131 472.2 346 68.2
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 3.6e-131 472.2 349 67.0
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 7.9e-131 471.1 343 71.4
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 7.9e-131 471.1 375 66.1
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.8e-130 469.9 323 72.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 3.0e-130 469.2 330 72.1
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 8.8e-130 467.6 332 71.4
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.8e-130 467.6 351 70.1
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.0e-129 466.5 349 68.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 3.3e-129 465.7 351 66.7
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.7e-128 463.4 326 70.6
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.1e-127 459.1 313 73.8
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 7.0e-127 458.0 330 71.5
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 2.0e-126 456.4 352 67.9
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.6e-126 456.1 322 71.7
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.5e-126 455.7 331 70.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.5e-126 455.7 362 64.4
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.3e-125 453.8 338 67.5
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.2e-125 453.0 315 72.7
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 8.5e-125 451.1 268 83.6
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.5e-124 450.3 326 68.7
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.6e-123 446.8 352 64.5
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 3.3e-121 439.1 349 64.2
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 2.8e-120 436.0 275 81.5
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.7e-120 435.6 349 65.6
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 7.2e-116 421.4 547 46.3
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.1e-115 419.9 289 76.1
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 5.7e-105 385.2 347 58.5
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 5.2e-98 362.1 227 80.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.3e-96 357.5 352 54.5
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 2.9e-96 356.3 334 54.8
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.9e-92 343.6 280 65.7
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.6e-89 333.2 243 67.5
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 9.8e-89 331.3 231 73.2
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.7e-88 329.3 206 80.1
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.4e-87 326.6 290 58.3
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 8.6e-85 318.2 268 63.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.2e-83 314.3 231 70.1
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 8.1e-83 311.6 203 78.3
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 4.1e-79 299.3 163 90.8
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.0e-77 294.7 188 79.3
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 5.8e-65 252.3 376 39.6
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.1e-62 243.8 186 65.6
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 6.2e-59 232.3 187 65.2
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-58 231.1 172 69.2
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.4e-58 231.1 166 69.3
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 2.4e-58 230.3 215 57.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 8.4e-56 221.9 197 60.9
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 4.3e-52 209.5 144 72.9
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 5.6e-52 209.1 270 46.7
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.6e-46 191.0 330 39.1
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.0e-37 160.2 115 72.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.1e-30 137.5 286 36.0
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.9e-28 131.0 279 32.6
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 3.3e-28 130.2 376 31.9
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.6e-27 127.9 127 52.8
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.8e-26 124.4 71 85.9
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.7e-22 110.5 215 35.3
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 5.7e-20 102.8 66 75.8
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.7e-19 100.1 56 87.5
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.1e-18 97.1 64 71.9
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.5e-17 94.7 57 77.2
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.6e-14 84.7 91 48.4
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 1.0e-13 82.0 61 72.1
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 2.3e-13 80.9 134 42.5
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.6e-09 67.4 54 61.1
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 3.6e-06 57.0 57 52.6


User provided reference genes

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