Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.3e-97 359.8 181 100.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 6.5e-78 294.3 181 82.9
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 8.5e-78 293.9 181 84.5
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.2e-77 291.6 181 81.8
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 7.2e-77 290.8 180 82.8
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.2e-76 290.0 183 82.5
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 7.9e-76 287.3 181 80.1
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 7.9e-76 287.3 181 80.1
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.0e-74 282.7 181 82.3
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 5.7e-74 281.2 181 80.7
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.3e-73 280.0 181 80.1
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.2e-73 279.3 182 83.0
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 4.5e-71 271.6 181 76.8
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.1e-69 266.9 181 75.1
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 2.7e-68 262.3 182 76.4
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 4.7e-68 261.5 256 58.2
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 6.1e-68 261.2 185 75.7
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.9e-67 258.5 174 74.1
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 8.8e-67 257.3 177 72.3
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.1e-66 256.9 174 73.6
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.5e-66 256.5 178 74.7
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.3e-66 255.4 177 74.0
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 4.4e-66 255.0 177 75.1
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 7.4e-66 254.2 174 73.6
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 7.4e-66 254.2 178 74.2
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 7.4e-66 254.2 177 75.1
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 2.8e-65 252.3 175 73.1
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 6.3e-65 251.1 177 72.9
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.4e-64 250.0 174 72.4
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.4e-64 249.2 177 71.2
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 2.4e-64 249.2 175 73.1
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.1e-64 248.4 180 70.6
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 4.1e-64 248.4 174 73.0
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 7.0e-64 247.7 177 72.9
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 7.0e-64 247.7 177 70.6
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-63 246.9 174 71.8
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 2.0e-63 246.1 180 70.6
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.0e-63 246.1 180 70.6
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.6e-63 245.7 173 72.3
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.5e-63 245.4 180 70.6
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 3.5e-63 245.4 178 70.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 4.5e-63 245.0 174 71.8
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 5.9e-63 244.6 169 72.2
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.0e-62 243.8 178 71.3
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.3e-62 243.4 174 71.8
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.7e-62 243.0 177 70.1
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.7e-62 243.0 174 69.5
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.7e-62 243.0 174 69.5
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.2e-62 242.7 177 71.2
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.2e-62 242.7 177 70.6
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.8e-62 241.9 179 72.6
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 5.0e-62 241.5 177 71.2
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 8.5e-62 240.7 178 69.7
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 8.5e-62 240.7 178 70.2
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 8.5e-62 240.7 176 68.8
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.5e-61 240.0 176 71.0
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.9e-61 239.6 178 69.7
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.9e-61 239.6 177 70.6
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.5e-61 239.2 177 70.1
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 3.2e-61 238.8 178 69.7
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 4.2e-61 238.4 178 69.7
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 5.5e-61 238.0 180 70.0
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 7.2e-61 237.7 174 69.5
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 9.4e-61 237.3 174 69.5
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 9.4e-61 237.3 174 69.5
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 9.4e-61 237.3 177 67.8
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.2e-60 236.9 178 69.1
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.2e-60 236.9 178 69.1
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.2e-60 236.9 178 69.1
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.2e-60 236.9 178 69.1
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.6e-60 236.5 176 68.2
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 2.1e-60 236.1 178 68.5
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.7e-60 235.7 177 67.8
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.1e-60 234.6 174 69.5
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 8.0e-60 234.2 174 67.8
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.0e-59 233.8 177 68.4
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.0e-59 233.8 168 70.8
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.4e-59 233.4 182 67.0
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.4e-59 233.4 176 68.8
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.3e-59 232.6 179 67.6
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 3.0e-59 232.3 174 69.0
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 3.0e-59 232.3 171 69.6
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.2e-59 231.5 174 68.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 5.2e-59 231.5 177 67.2
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 6.7e-59 231.1 174 70.7
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.2e-58 230.3 185 65.9
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.2e-58 230.3 182 67.6
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 2.0e-58 229.6 178 65.7
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 7.5e-58 227.6 178 66.3
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.3e-57 226.9 180 70.0
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.7e-57 226.5 176 67.6
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.7e-57 226.5 188 63.8
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.2e-57 226.1 180 68.3
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.2e-57 226.1 180 68.3
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.8e-57 225.7 179 67.0
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.7e-57 225.3 167 69.5
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 4.8e-57 224.9 180 68.3
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 8.3e-57 224.2 182 67.0
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-56 223.8 178 68.5
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.4e-56 223.4 183 65.6
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.8e-56 223.0 180 67.8
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.0e-56 221.1 182 64.8
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 9.1e-56 220.7 183 64.5
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.2e-55 220.3 178 63.5
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.0e-55 219.5 176 65.3
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.0e-55 219.5 178 64.0
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 2.0e-55 219.5 184 63.0
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 4.5e-55 218.4 182 65.9
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 4.5e-55 218.4 155 69.0
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 4.5e-55 218.4 177 65.0
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.0e-54 217.2 181 63.5
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.0e-54 217.2 179 63.7
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 5.0e-54 214.9 183 63.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 8.5e-54 214.2 157 71.3
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 8.5e-54 214.2 174 64.4
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.1e-53 213.8 179 64.2
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.5e-53 213.4 137 75.2
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.5e-53 212.6 177 62.7
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.2e-53 212.2 174 64.4
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.2e-53 212.2 174 64.4
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 4.2e-53 211.8 137 75.9
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 5.5e-53 211.5 180 65.0
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 6.1e-52 208.0 175 63.4
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 6.8e-51 204.5 180 59.4
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 9.8e-50 200.7 187 57.8
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 3.7e-49 198.7 155 67.1
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 4.8e-49 198.4 180 61.1
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 8.3e-49 197.6 174 59.8
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.1e-48 197.2 176 60.2
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 7.7e-47 191.0 159 64.8
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.9e-46 189.1 123 76.4
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.2e-45 185.3 177 58.8
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.0e-42 176.4 138 60.1
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 4.4e-42 175.3 182 55.5
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 9.8e-42 174.1 180 55.6
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.3e-41 173.7 174 52.3
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 3.7e-41 172.2 155 58.1
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.4e-40 170.2 169 53.8
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.3e-38 162.9 142 54.9
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.5e-34 150.2 89 78.7
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.3e-33 147.1 91 78.0
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.7e-33 146.7 179 46.9
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-31 139.4 88 77.3
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-31 139.4 86 76.7
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.9e-29 133.3 139 53.2
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.3e-29 132.5 178 46.1
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.2e-28 130.6 125 59.2
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 3.6e-28 129.0 114 61.4
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 6.2e-28 128.3 93 75.3
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.8e-27 126.7 114 60.5
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.5e-26 123.6 117 59.8
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 2.1e-23 113.2 101 60.4
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 2.1e-23 113.2 101 60.4
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 5.6e-21 105.1 121 41.3
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.6e-20 103.6 121 44.6
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.0e-19 99.0 138 39.9
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 6.8e-19 98.2 113 38.9
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.5e-15 85.9 86 57.0
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.1e-12 74.7 48 75.0
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.8e-11 73.6 101 38.6
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 6.8e-11 71.6 58 63.8
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 6.8e-11 71.6 65 56.9
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.0e-06 57.8 80 46.2


User provided reference genes

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