Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 3660.2 1813 100.0
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 3417.5 1814 94.1
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 3384.3 1813 92.7
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 3244.1 1813 89.4
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 3158.6 1814 86.3
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 3145.5 1814 86.1
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 3145.1 1812 86.2
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 3132.0 1814 86.1
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 3127.4 1828 84.8
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 3126.7 1814 85.7
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 3073.5 1816 83.9
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 3057.7 1855 82.4
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2672.5 1852 72.2
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2663.3 1946 69.7
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2632.1 1842 71.0
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2626.7 1836 71.4
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2625.5 1933 68.8
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2619.3 1836 71.0
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2617.0 1833 71.0
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2615.5 1835 71.1
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2612.0 1838 70.5
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2610.9 1831 70.6
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2608.6 1831 70.5
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2606.2 1800 72.6
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2605.5 1834 71.0
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2602.8 1832 70.4
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2597.8 1841 69.9
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2593.9 1839 70.3
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2584.3 1847 69.6
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2564.6 1859 69.0
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2556.9 1894 67.7
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2548.9 1829 69.1
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2532.3 1971 65.8
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2522.3 1833 68.4
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2514.2 1833 68.5
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2513.4 1897 68.2
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2501.1 1835 68.0
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2495.7 1834 67.9
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2487.2 1707 71.8
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2477.2 1954 64.8
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2436.0 1947 63.9
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2405.6 1828 65.8
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2402.5 1834 66.5
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2394.8 1828 65.7
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2375.5 1826 65.4
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2370.5 1836 64.3
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2362.8 1826 64.5
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2342.4 1838 64.6
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2341.2 1598 71.7
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2338.1 1831 64.8
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2326.2 1830 64.3
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2314.3 1821 64.0
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2312.7 1832 64.1
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2312.3 1734 66.1
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2306.6 1829 63.4
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2279.2 1833 63.0
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2266.9 1833 62.2
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2261.5 1831 63.0
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2261.5 1831 62.9
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2260.7 1829 63.0
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2259.2 1829 62.7
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2258.8 1947 59.6
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2257.6 1706 66.6
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2248.4 1832 62.7
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2237.2 1836 62.7
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2228.0 1838 62.2
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2218.7 1830 61.9
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2218.4 1733 65.4
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2201.8 1838 61.6
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2195.2 1849 61.3
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2192.5 1857 61.0
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2191.8 1839 61.2
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2190.6 1827 61.6
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2177.9 1833 61.3
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2165.6 1847 60.4
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2157.5 1861 60.5
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 2152.5 1461 73.6
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2147.5 1868 60.0
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 2112.8 1848 57.8
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 2108.6 1856 59.8
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 2104.3 1835 59.6
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 2051.2 1848 58.8
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2048.5 1780 60.7
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1987.6 1476 68.4
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1796.9 1526 61.1
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1768.1 1216 72.0
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1693.7 1223 68.4
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1662.5 1757 51.5
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1653.3 1333 62.9
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1562.7 1416 58.5
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1560.8 972 79.8
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1439.5 1947 42.9
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1413.7 1945 42.6
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1412.1 1780 44.3
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1391.7 1052 66.1
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1328.5 1355 54.5
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1228.0 938 64.2
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1182.5 1854 39.4
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1178.3 905 63.2
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1157.5 1218 51.8
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1157.1 1160 54.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1147.9 793 71.9
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 8.2e-306 1054.7 917 61.7
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 9.4e-286 988.0 912 57.1
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 5.7e-283 978.8 1666 38.4
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 5.8e-259 899.0 817 56.4
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.4e-233 814.7 635 64.7
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 6.2e-229 799.3 730 56.0
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.9e-223 780.0 516 72.7
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 4.0e-220 770.0 869 48.2
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 6.5e-210 736.1 626 60.4
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 9.3e-209 732.3 521 69.5
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 1.5e-206 724.9 516 68.0
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.1e-185 655.6 1064 39.4
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.8e-183 648.3 887 46.6
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 5.2e-183 646.7 526 59.7
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 5.7e-174 616.7 888 41.6
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.8e-173 614.4 571 59.5
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.0e-159 567.8 730 44.8
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 7.0e-156 556.6 396 67.9
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 2.5e-153 548.1 443 63.4
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 9.2e-140 503.1 296 83.1
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 3.3e-137 494.6 327 73.1
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 8.1e-136 490.0 441 57.8
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 1.3e-125 456.1 370 61.1
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.9e-125 454.9 539 46.6
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 3.9e-122 444.5 312 71.2
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.8e-120 437.6 422 57.3
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 9.9e-118 429.9 518 46.3
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 9.3e-108 396.7 312 62.8
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 6.0e-107 394.0 817 33.3
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 3.0e-106 391.7 395 53.2
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.3e-104 386.3 391 57.5
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 1.8e-103 382.5 254 76.0
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 6.9e-103 380.6 340 61.2
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 1.9e-100 372.5 350 55.4
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.2e-100 371.7 381 52.8
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 1.4e-84 319.7 815 29.8
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 9.4e-84 317.0 186 83.9
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 6.5e-61 241.1 183 69.9
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.2e-59 236.9 142 82.4
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 8.0e-59 234.2 165 66.7
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.7e-48 198.7 229 46.3
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 1.0e-42 180.6 122 70.5
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 6.8e-42 177.9 230 42.2
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 7.5e-41 174.5 144 63.2
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 7.0e-39 167.9 169 49.7
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 1.6e-38 166.8 126 65.1
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 1.3e-37 163.7 450 27.6
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 8.9e-34 151.0 301 32.9
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 2.0e-33 149.8 102 75.5
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 2.6e-33 149.4 223 37.7
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 1.7e-32 146.7 101 69.3
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.4e-31 142.9 154 51.9
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 6.0e-30 138.3 158 44.3
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 6.0e-30 138.3 121 59.5
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 7.8e-30 137.9 111 64.9
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 5.0e-29 135.2 124 56.5
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 5.0e-29 135.2 163 45.4
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.9e-28 133.3 115 66.1
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 5.6e-28 131.7 182 43.4
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.8e-27 129.4 84 71.4
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.5e-25 121.3 103 60.2
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 9.9e-25 120.9 206 35.0
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 1.3e-24 120.6 107 58.9
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 1.7e-21 110.2 124 42.7
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 3.9e-21 109.0 74 71.6
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 8.6e-21 107.8 149 49.0
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.5e-20 107.1 54 83.3
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 5.6e-20 105.1 76 65.8
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 7.3e-20 104.8 163 36.2
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 1.6e-19 103.6 86 55.8
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 2.1e-19 103.2 128 47.7
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 1.7e-16 93.6 71 70.4
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 4.9e-16 92.0 94 47.9
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 6.0e-14 85.1 58 75.9
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.3e-12 79.0 102 44.1
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 7.3e-12 78.2 77 49.4
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 3.1e-10 72.8 75 46.7
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 3.8e-08 65.9 60 61.7
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 5.4e-07 62.0 77 45.5
Actinidia02220 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.1e-06 60.1 38 68.4
MBI08_g18763_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D010488 3.5e-06 59.3 42 73.8


User provided reference genes

Program Settings