Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 5.3e-72 274.2 137 100.0
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 3.4e-63 245.0 137 89.1
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 4.2e-61 238.0 135 85.9
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 9.3e-53 210.3 137 78.1
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 2.7e-52 208.8 135 77.8
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 1.3e-51 206.5 129 75.2
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 8.7e-51 203.8 128 77.3
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 1.6e-49 199.5 127 76.4
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 3.4e-47 191.8 165 63.6
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 7.7e-47 190.7 126 74.6
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 1.0e-46 190.3 134 69.4
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 2.9e-46 188.7 124 73.4
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 6.5e-46 187.6 172 57.0
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 6.5e-46 187.6 130 69.2
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 7.2e-45 184.1 129 69.8
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 9.4e-45 183.7 134 67.2
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 1.2e-44 183.3 121 75.2
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 1.2e-44 183.3 126 71.4
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 2.7e-44 182.2 135 66.7
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 6.1e-44 181.0 133 68.4
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 7.9e-44 180.6 133 68.4
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 3.0e-43 178.7 122 72.1
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 3.0e-43 178.7 130 65.4
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 3.9e-43 178.3 123 71.5
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 3.9e-43 178.3 128 68.8
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 5.1e-43 177.9 122 71.3
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 6.7e-43 177.6 128 67.2
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 8.8e-43 177.2 123 70.7
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 1.5e-42 176.4 132 65.2
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 2.0e-42 176.0 130 63.8
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 2.5e-42 175.6 126 69.0
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 3.3e-42 175.3 112 76.8
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 3.3e-42 175.3 122 71.3
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 5.7e-42 174.5 122 71.3
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 7.4e-42 174.1 127 67.7
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 9.7e-42 173.7 120 70.0
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 9.7e-42 173.7 120 70.0
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 9.7e-42 173.7 107 82.2
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 1.3e-41 173.3 126 64.3
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.2e-41 172.6 123 69.9
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 2.2e-41 172.6 140 63.6
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 2.2e-41 172.6 124 67.7
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 2.8e-41 172.2 122 68.0
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 3.7e-41 171.8 127 70.1
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 4.8e-41 171.4 128 66.4
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 6.3e-41 171.0 121 66.9
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 8.2e-41 170.6 126 66.7
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 1.4e-40 169.9 123 66.7
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 1.4e-40 169.9 123 69.1
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 1.8e-40 169.5 128 65.6
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 1.8e-40 169.5 128 66.4
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 1.8e-40 169.5 128 63.3
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 2.4e-40 169.1 122 69.7
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 2.4e-40 169.1 122 68.9
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 4.1e-40 168.3 128 64.1
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 4.1e-40 168.3 128 64.1
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 5.3e-40 167.9 130 62.3
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 5.3e-40 167.9 128 64.1
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 9.1e-40 167.2 122 68.9
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 9.1e-40 167.2 122 68.0
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 1.2e-39 166.8 128 64.8
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.0e-39 166.0 122 68.9
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 3.4e-39 165.2 128 62.5
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 5.9e-39 164.5 128 62.5
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 7.7e-39 164.1 143 55.2
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 1.0e-38 163.7 125 62.4
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 1.0e-38 163.7 127 63.0
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.3e-38 163.3 127 62.2
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 1.3e-38 163.3 127 61.4
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.3e-38 163.3 127 61.4
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.3e-38 163.3 127 61.4
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 1.3e-38 163.3 134 63.4
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.2e-38 162.5 121 64.5
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 2.2e-38 162.5 106 71.7
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 2.2e-38 162.5 127 61.4
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.9e-38 162.2 127 61.4
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 2.9e-38 162.2 127 61.4
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 6.5e-38 161.0 127 60.6
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 8.5e-38 160.6 133 58.6
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.1e-37 160.2 106 70.8
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.1e-37 160.2 129 59.7
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 1.4e-37 159.8 127 60.6
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 2.5e-37 159.1 120 64.2
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 4.2e-37 158.3 107 76.6
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 5.5e-37 157.9 127 59.8
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 7.2e-37 157.5 124 63.7
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 2.1e-36 156.0 124 62.1
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 2.7e-36 155.6 120 64.2
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 6.1e-36 154.5 126 55.6
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 1.8e-35 152.9 123 60.2
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 8.8e-35 150.6 156 52.6
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 3.3e-34 148.7 130 56.9
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 1.3e-33 146.7 100 70.0
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 2.2e-30 136.0 120 52.5
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 3.8e-30 135.2 93 75.3
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 6.5e-30 134.4 135 54.8
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 9.4e-29 130.6 117 52.1
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 6.1e-28 127.9 100 63.0
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 6.1e-28 127.9 178 41.6
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 1.4e-27 126.7 92 70.7
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 1.1e-26 123.6 118 50.0
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 5.7e-26 121.3 98 59.2
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 7.4e-26 120.9 93 64.5
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 2.8e-25 119.0 92 63.0
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.1e-24 117.1 98 57.1
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 1.1e-24 117.1 105 54.3
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 1.4e-24 116.7 107 57.9
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 3.1e-24 115.5 98 56.1
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 5.3e-24 114.8 97 61.9
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 7.0e-24 114.4 104 60.6
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 1.6e-20 103.2 96 47.9
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 1.6e-20 103.2 102 48.0
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 5.2e-19 98.2 88 55.7
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 3.4e-18 95.5 69 65.2
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 7.5e-18 94.4 98 50.0
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 7.5e-18 94.4 90 60.0
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 1.8e-16 89.7 74 56.8
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.4e-16 89.4 99 49.5
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 2.1e-12 76.3 55 60.0
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 5.2e-11 71.6 119 28.6
EL10Ac2g03070 Beta vulgaris HOM05D000615 ORTHO05D000447 7.7e-07 57.8 33 72.7
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 6.6e-06 54.7 51 52.9


User provided reference genes

Program Settings