Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 3.3e-234 814.7 419 100.0
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 2.2e-190 669.1 374 92.5
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 1.1e-184 650.2 374 91.2
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 3.8e-182 641.7 374 89.6
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 1.1e-165 587.0 377 80.6
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 3.2e-160 568.9 376 81.4
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 1.2e-156 557.0 374 77.8
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 1.8e-155 553.1 374 78.9
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 2.9e-145 519.2 375 73.6
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 8.4e-145 517.7 374 74.1
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 4.0e-131 472.2 378 67.2
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 9.0e-131 471.1 377 67.4
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 3.8e-129 465.7 377 65.3
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 4.6e-127 458.8 379 64.6
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 7.9e-127 458.0 381 65.6
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 1.8e-126 456.8 386 64.8
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 1.9e-125 453.4 378 65.1
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 5.6e-125 451.8 378 63.0
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 1.4e-123 447.2 378 63.8
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 4.0e-123 445.7 380 64.5
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 9.9e-122 441.0 378 63.0
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 1.7e-121 440.3 381 62.7
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 6.4e-121 438.3 381 63.3
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.4e-120 437.2 381 63.5
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 1.2e-119 434.1 378 62.2
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 1.2e-119 434.1 378 61.1
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.6e-119 433.7 381 63.0
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 3.5e-119 432.6 377 59.2
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 3.0e-118 429.5 378 61.9
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 6.7e-118 428.3 378 61.9
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 3.3e-117 426.0 379 62.8
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 7.4e-117 424.9 378 59.3
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 1.6e-116 423.7 378 60.3
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 2.1e-116 423.3 378 60.3
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 1.4e-115 420.6 381 62.5
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 1.4e-115 420.6 378 59.8
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 5.3e-115 418.7 378 59.8
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 6.9e-115 418.3 378 60.1
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.2e-114 417.5 379 59.4
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 7.6e-114 414.8 378 59.8
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 2.2e-113 413.3 378 59.5
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 2.9e-113 412.9 381 60.9
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 6.5e-113 411.8 378 59.8
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 1.9e-112 410.2 378 60.3
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 1.2e-111 407.5 377 58.9
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 2.1e-111 406.8 374 61.5
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 4.6e-111 405.6 380 59.5
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 1.0e-110 404.4 377 59.9
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 1.8e-110 403.7 380 59.2
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 5.1e-110 402.1 313 69.0
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 2.5e-109 399.8 377 59.2
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 4.3e-109 399.1 377 59.4
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 3.7e-108 396.0 378 60.6
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 6.9e-107 391.7 374 57.2
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 2.0e-106 390.2 379 56.7
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 3.8e-105 386.0 374 56.1
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 6.5e-105 385.2 374 57.2
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 8.5e-105 384.8 382 57.3
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 4.2e-104 382.5 382 56.3
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.2e-103 380.9 261 76.2
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 3.0e-102 376.3 386 54.7
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 5.1e-102 375.6 383 54.8
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 5.1e-102 375.6 383 54.8
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 6.7e-102 375.2 383 55.6
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 8.7e-102 374.8 384 55.2
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 8.7e-102 374.8 384 54.7
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 1.1e-101 374.4 380 56.8
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 1.1e-101 374.4 335 58.2
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 1.5e-101 374.0 383 55.1
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 1.9e-101 373.6 381 56.2
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 2.5e-101 373.2 386 54.1
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 4.3e-101 372.5 374 54.8
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 5.7e-101 372.1 382 53.1
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 3.7e-100 369.4 381 53.8
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 4.8e-100 369.0 397 52.9
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 8.2e-100 368.2 382 53.7
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 1.4e-99 367.5 381 54.1
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 4.1e-99 365.9 385 53.5
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 6.9e-99 365.2 386 52.6
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 1.2e-98 364.4 406 51.2
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 1.2e-98 364.4 386 52.6
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 2.0e-98 363.6 376 54.5
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 1.3e-97 360.9 394 53.3
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 7.2e-96 355.1 379 54.4
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 1.6e-95 354.0 383 53.8
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 1.6e-95 354.0 381 52.2
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 4.7e-95 352.4 374 52.1
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 1.4e-94 350.9 391 50.6
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 6.7e-94 348.6 378 54.5
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 6.9e-91 338.6 345 56.5
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 5.0e-89 332.4 385 50.1
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 5.5e-88 328.9 281 61.6
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 3.0e-86 323.2 386 47.7
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 7.5e-77 292.0 382 46.3
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 1.1e-67 261.5 225 65.8
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 1.5e-64 251.1 277 51.6
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 3.6e-63 246.5 391 40.2
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 3.4e-61 240.0 390 39.5
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.1e-59 235.0 200 60.0
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 5.4e-51 206.1 379 37.5
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 1.2e-50 204.9 170 65.3
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 9.5e-48 195.3 167 61.1
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 8.0e-47 192.2 168 64.3
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 5.8e-45 186.0 179 57.5
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 7.0e-43 179.1 169 59.8
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 2.7e-42 177.2 233 45.1
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 1.3e-41 174.9 377 35.3
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 1.7e-41 174.5 371 34.5
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 4.0e-38 163.3 280 37.9
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 2.5e-32 144.1 162 50.6
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 1.5e-29 134.8 169 49.7
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 1.9e-27 127.9 160 47.5
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 9.2e-27 125.6 160 49.4
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.0e-25 122.1 189 43.4
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.0e-25 120.6 189 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 1.4e-22 111.7 142 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 1.5e-16 91.7 167 31.7
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 1.3e-15 88.6 72 58.3
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.5e-13 80.1 125 40.0
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 7.6e-13 79.3 439 25.3
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 9.9e-13 79.0 92 48.9
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 4.9e-12 76.6 84 48.8
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 4.2e-11 73.6 83 45.8
Psat0s1013g0040 Pisum sativum HOM05D006028 ORTHO05D007784 5.4e-11 73.2 66 60.6
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.3e-08 63.5 84 42.9


User provided reference genes

Program Settings