Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 4.5e-103 377.9 184 100.0
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 4.1e-96 354.8 184 93.5
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 3.9e-86 321.6 184 82.6
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 6.6e-86 320.9 186 82.3
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 7.3e-85 317.4 187 81.8
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 9.5e-85 317.0 184 81.5
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 2.1e-84 315.8 187 80.2
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 4.7e-84 314.7 181 83.4
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 1.1e-83 313.5 186 81.7
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.4e-83 313.2 186 79.0
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.7e-81 306.2 183 78.1
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 2.9e-81 305.4 183 76.5
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 7.1e-80 300.8 178 76.4
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.7e-78 296.2 182 73.1
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 3.3e-77 292.0 182 72.0
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 1.2e-76 290.0 183 72.7
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 2.1e-76 289.3 183 71.6
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.1e-76 289.3 183 71.6
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 1.5e-74 283.1 183 71.6
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 3.4e-74 282.0 183 68.9
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 9.9e-74 280.4 183 69.9
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 1.7e-73 279.6 183 68.9
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 2.2e-73 279.3 184 67.9
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 2.2e-73 279.3 182 68.7
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 3.7e-73 278.5 182 69.8
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 8.3e-73 277.3 182 69.8
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.1e-72 276.9 178 67.4
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.1e-72 276.9 181 66.9
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.4e-72 276.6 182 67.6
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 1.9e-72 276.2 182 67.0
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 4.1e-72 275.0 183 67.2
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 4.1e-72 275.0 182 67.6
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 5.4e-72 274.6 183 67.8
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 3.5e-71 271.9 179 65.9
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 4.6e-71 271.6 176 67.6
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.6e-71 271.6 176 68.2
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.6e-71 271.6 176 68.2
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 1.3e-70 270.0 182 64.8
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.5e-69 266.5 177 65.5
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 3.3e-69 265.4 179 67.6
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 3.3e-69 265.4 187 65.8
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 3.3e-69 265.4 172 68.6
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 4.3e-69 265.0 179 68.2
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 7.3e-69 264.2 182 63.7
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 7.3e-69 264.2 174 67.8
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 9.6e-69 263.8 182 64.3
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.6e-68 263.1 182 63.7
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 2.1e-68 262.7 179 66.5
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 2.1e-68 262.7 182 64.8
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 2.1e-68 262.7 184 64.1
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 6.2e-68 261.2 180 65.0
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 8.1e-68 260.8 179 65.9
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.8e-67 259.6 177 67.2
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.8e-67 259.6 177 66.7
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.4e-67 259.2 180 65.6
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 2.4e-67 259.2 177 66.1
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 4.0e-67 258.5 183 65.6
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 6.8e-67 257.7 180 63.3
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 8.9e-67 257.3 176 64.2
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.2e-66 256.9 177 63.3
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.2e-66 256.9 182 62.6
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.6e-66 255.8 171 67.3
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 4.4e-66 255.0 182 62.1
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 5.8e-66 254.6 180 65.6
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 7.6e-66 254.2 178 66.3
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.6e-66 254.2 176 64.2
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 7.6e-66 254.2 180 62.8
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.3e-65 253.4 174 66.1
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 2.2e-65 252.7 180 65.6
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.2e-65 252.7 180 62.2
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 3.8e-65 251.9 179 65.4
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.8e-65 251.9 176 65.3
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 8.4e-65 250.8 179 63.7
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.9e-64 249.6 179 63.1
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 4.2e-64 248.4 176 63.6
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 7.1e-64 247.7 176 62.5
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 9.3e-64 247.3 176 65.3
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 9.3e-64 247.3 186 61.3
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.2e-63 246.9 151 74.2
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 2.7e-63 245.7 169 65.7
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 3.5e-63 245.4 179 63.1
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 3.5e-63 245.4 179 61.5
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.8e-63 244.2 154 70.8
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 3.0e-62 242.3 177 65.0
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 3.0e-62 242.3 180 63.3
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 3.9e-62 241.9 170 66.5
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 5.1e-62 241.5 175 62.3
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 6.6e-62 241.1 170 65.9
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 8.7e-62 240.7 177 61.0
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 2.5e-61 239.2 178 61.8
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 2.5e-61 239.2 169 65.7
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 2.5e-61 239.2 174 60.3
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 3.3e-61 238.8 180 58.9
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 2.1e-60 236.1 185 57.8
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 2.1e-60 236.1 185 57.8
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.8e-59 233.0 154 66.2
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.9e-56 223.0 170 60.0
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 3.2e-56 222.2 155 62.6
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.2e-56 222.2 152 67.1
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 4.2e-56 221.9 176 56.2
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 7.1e-56 221.1 166 60.8
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.5e-53 213.4 148 63.5
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 8.4e-49 197.6 172 52.3
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 4.2e-48 195.3 168 53.6
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.5e-47 192.2 132 62.1
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 5.1e-46 188.3 175 50.3
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.9e-45 186.4 153 57.5
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 4.8e-44 181.8 177 46.3
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 8.1e-44 181.0 186 44.6
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.4e-40 170.2 181 44.2
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 2.5e-37 159.5 136 55.1
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 3.1e-35 152.5 178 43.3
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 9.7e-29 131.0 131 50.4
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 6.7e-22 108.2 151 39.1
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 1.3e-20 104.0 75 64.0
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 3.7e-20 102.4 173 34.7
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 9.1e-19 97.8 177 36.7
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.5e-16 89.7 60 58.3
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 8.2e-12 74.7 97 42.3
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 8.5e-09 64.7 185 28.6
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 1.1e-08 64.3 185 28.6
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.1e-08 64.3 186 29.0
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 1.5e-08 63.9 177 29.4
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 1.5e-08 63.9 177 29.4
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.9e-08 63.5 177 29.4
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.9e-08 63.5 177 29.4
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.9e-08 63.5 177 29.4
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.9e-08 63.5 176 28.4
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 3.2e-08 62.8 176 28.4
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 4.2e-08 62.4 176 28.4
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 5.5e-08 62.0 180 29.4
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 5.5e-08 62.0 185 27.6
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 7.2e-08 61.6 182 29.1
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 7.2e-08 61.6 179 28.5
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 9.4e-08 61.2 182 28.0
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 9.4e-08 61.2 182 29.1
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 9.4e-08 61.2 182 29.1
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 9.4e-08 61.2 180 29.4
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.2e-07 60.8 180 29.4
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.2e-07 60.8 182 28.6
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 1.6e-07 60.5 180 28.3
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 2.1e-07 60.1 180 28.9
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 2.7e-07 59.7 185 27.6
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 2.7e-07 59.7 188 28.2
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 2.7e-07 59.7 186 27.4
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 3.6e-07 59.3 174 29.3
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 3.6e-07 59.3 178 25.3
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.6e-07 59.3 157 29.9
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.6e-07 59.3 181 27.1
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 6.1e-07 58.5 181 26.5
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 6.1e-07 58.5 182 30.2
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 6.1e-07 58.5 182 30.2
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 6.1e-07 58.5 182 30.2
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 8.0e-07 58.2 182 28.0
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 8.0e-07 58.2 179 28.5
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 8.0e-07 58.2 203 28.1
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.0e-06 57.8 184 26.6
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 1.0e-06 57.8 179 26.8
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.4e-06 57.4 183 27.9
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 1.4e-06 57.4 178 28.1
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 1.4e-06 57.4 181 29.3
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 1.8e-06 57.0 176 27.3
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.8e-06 57.0 185 27.6
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 3.0e-06 56.2 182 28.6
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 3.0e-06 56.2 183 28.4
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 3.0e-06 56.2 181 29.3
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 5.2e-06 55.5 183 27.3
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 8.8e-06 54.7 182 26.4
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 8.8e-06 54.7 176 25.0


User provided reference genes

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