Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G214000 Glycine max HOM05D001292 ORTHO05D001202 2.2e-111 405.6 196 100.0
LjContig00408g0003702 Lotus japonicus HOM05D001292 ORTHO05D001202 3.2e-54 215.7 176 62.5
Glyma.06G095600 Glycine max HOM05D001292 ORTHO05D001202 1.7e-47 193.4 175 60.0
Lalb_Chr11g0065021 Lupinus albus HOM05D001292 ORTHO05D001202 2.3e-44 183.0 156 61.5
Lj1g0015973 Lotus japonicus HOM05D001292 ORTHO05D001202 3.0e-44 182.6 175 56.0
Lalb_Chr08g0242481 Lupinus albus HOM05D001292 ORTHO05D001202 8.7e-44 181.0 185 55.1
VMungo1309G1057 Vigna mungo HOM05D001292 ORTHO05D001202 7.3e-43 177.9 175 57.7
Psat5g046880 Pisum sativum HOM05D001292 ORTHO05D001202 1.6e-42 176.8 178 53.9
Ca_16000_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 2.1e-42 176.4 176 55.7
arahy.Tifrunner.gnm1.ann1.72ZBT8 Arachis hypogaea HOM05D001292 ORTHO05D001202 4.8e-42 175.3 177 54.2
Medtr3g100390 Medicago truncatula HOM05D001292 ORTHO05D001202 9.9e-40 167.5 181 52.5
Phvul.009G037600 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 9.9e-40 167.5 179 53.6
TPR.G6330 Trifolium pratense HOM05D001292 ORTHO05D001202 4.6e-37 158.7 175 50.9
Haze_22451 Corylus avellana HOM05D001292 ORTHO05D001202 7.4e-35 151.4 177 46.3
Cfa013791 Carpinus fangiana HOM05D001292 ORTHO05D001202 1.6e-34 150.2 177 47.5
arahy.Tifrunner.gnm1.ann1.6V6D2H Arachis hypogaea HOM05D001292 ORTHO05D001202 1.4e-33 147.1 155 52.3
CiPaw.07G165900 Carya illinoinensis HOM05D001292 ORTHO05D001202 2.6e-32 142.9 177 44.6
GSVIVG01009172001 Vitis vinifera HOM05D001292 ORTHO05D001202 4.2e-30 135.6 194 42.8
COL.COLO4_35242 Corchorus olitorius HOM05D001292 ORTHO05D001202 5.5e-30 135.2 196 40.8
CiPaw.08G055500 Carya illinoinensis HOM05D001292 ORTHO05D001202 2.1e-29 133.3 174 45.4
Glyma.04G093800 Glycine max HOM05D001292 ORTHO05D001202 2.7e-29 132.9 175 47.4
Thecc.08G070600 Theobroma cacao HOM05D001292 ORTHO05D001202 3.0e-28 129.4 195 40.0
Gorai.002G142500 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.9e-27 126.7 196 39.3
Gohir.D01G117200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 5.6e-27 125.2 195 39.5
MD15G1385000 Malus domestica HOM05D001292 ORTHO05D001202 7.4e-27 124.8 175 43.4
Dinv44858 Davidia involucrata HOM05D001292 ORTHO05D001202 9.6e-27 124.4 176 38.1
QL09p017743 Quercus lobata HOM05D001292 ORTHO05D001202 2.1e-26 123.2 168 42.9
MD08G1197400 Malus domestica HOM05D001292 ORTHO05D001202 8.2e-26 121.3 173 42.8
Gohir.A01G132400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 6.9e-25 118.2 194 37.6
RcHm_v2.0_Chr7g0236781 Rosa chinensis HOM05D001292 ORTHO05D001202 6.9e-25 118.2 197 39.1
Sed0011755 Sechium edule HOM05D001292 ORTHO05D001202 5.8e-24 115.2 184 40.2
Gorai.009G229600 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.0e-23 114.4 185 35.7
Eucgr.F02147 Eucalyptus grandis HOM05D001292 ORTHO05D001202 1.7e-23 113.6 174 39.7
Gohir.A05G219700 Gossypium hirsutum HOM05D001292 ORTHO05D001202 2.2e-23 113.2 185 35.7
Gohir.D05G222200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 4.9e-23 112.1 185 35.1
CANSAT25G2063 Cannabis sativa HOM05D001292 ORTHO05D001202 1.4e-22 110.5 166 38.0
FAN18G2083 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.4e-22 110.5 180 39.4
FAN13G3173 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.9e-22 110.2 180 38.9
Hma1.2p1_0125F.1_g058890 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 2.5e-22 109.8 174 36.2
FvH4_5g35390 Fragaria vesca HOM05D001292 ORTHO05D001202 3.2e-22 109.4 180 38.9
FAN04G0518 Fragaria x ananassa HOM05D001292 ORTHO05D001202 3.2e-22 109.4 143 42.7
FAN08G0616 Fragaria x ananassa HOM05D001292 ORTHO05D001202 3.2e-22 109.4 180 38.9
MELO3C011091.2 Cucumis melo HOM05D001292 ORTHO05D001202 9.3e-22 107.8 161 39.8
Cpa.g.sc21.13 Carica papaya HOM05D001292 ORTHO05D001202 1.2e-21 107.5 198 36.9
ClCG08G011690 Citrullus lanatus HOM05D001292 ORTHO05D001202 1.2e-21 107.5 158 39.2
Actinidia29624 Actinidia chinensis HOM05D001292 ORTHO05D001202 1.6e-21 107.1 178 34.8
PGR031G1992 Punica granatum HOM05D001292 ORTHO05D001202 2.7e-21 106.3 161 37.9
CsaV3_2G030290 Cucumis sativus L. HOM05D001292 ORTHO05D001202 2.3e-20 103.2 160 38.1
Hma1.2p1_0010F.1_g006660 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 2.3e-20 103.2 167 35.3
Sed0022127 Sechium edule HOM05D001292 ORTHO05D001202 2.3e-20 103.2 157 38.9
Ciclev10000201m.g Citrus clementina HOM05D001292 ORTHO05D001202 3.9e-20 102.4 126 42.9
Nn1g05565 Nelumbo nucifera HOM05D001292 ORTHO05D001202 5.1e-20 102.1 167 38.3
Prupe.6G149300 Prunus persica HOM05D001292 ORTHO05D001202 6.7e-20 101.7 120 46.7
Actinidia19631 Actinidia chinensis HOM05D001292 ORTHO05D001202 8.7e-20 101.3 178 34.3
TAR625G0946 Trochodendron aralioides HOM05D001292 ORTHO05D001202 5.7e-19 98.6 167 34.7
Rhsim07G0211800 Rhododendron simsii HOM05D001292 ORTHO05D001202 2.8e-18 96.3 181 31.5
Nn5g29887 Nelumbo nucifera HOM05D001292 ORTHO05D001202 1.1e-17 94.4 165 36.4
Manes.02G145000 Manihot esculenta HOM05D001292 ORTHO05D001202 5.3e-17 92.0 167 37.7
Sabra02G0083000 Salix brachista HOM05D001292 ORTHO05D001202 1.0e-15 87.8 197 30.5
Potri.005G155600 Populus trichocarpa HOM05D001292 ORTHO05D001202 1.3e-15 87.4 168 33.3
CSS0010703 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 2.9e-15 86.3 173 32.9
Potri.002G105700 Populus trichocarpa HOM05D001292 ORTHO05D001202 5.0e-15 85.5 197 30.5
HanXRQChr05g0163371 Helianthus annuus HOM05D001292 ORTHO05D001202 1.9e-14 83.6 188 29.8
Duzib052G0393 Durio zibethinus HOM05D001292 ORTHO05D001202 7.2e-14 81.6 136 33.8
MBI07_g34624_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 7.2e-14 81.6 167 30.5
Gohir.A04G115400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.2e-13 80.9 166 28.3
Gohir.D04G156900 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.6e-13 80.5 130 30.0
Gorai.012G143900 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.6e-13 80.5 130 30.0
Lsat_1_v5_gn_6_105041 Lactuca sativa HOM05D001292 ORTHO05D001202 1.6e-13 80.5 194 27.8
Duzib248G0868 Durio zibethinus HOM05D001292 ORTHO05D001202 2.1e-13 80.1 164 30.5
Aqoxy6G00877 Aquilegia oxysepala HOM05D001292 ORTHO05D001202 3.6e-13 79.3 133 31.6
THA.LOC104807180 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 3.6e-13 79.3 132 31.1
Lsat_1_v5_gn_4_183321 Lactuca sativa HOM05D001292 ORTHO05D001202 4.6e-13 79.0 159 28.9
Potri.017G044000 Populus trichocarpa HOM05D001292 ORTHO05D001202 7.9e-13 78.2 186 32.3
Sc01g0001150 Simmondsia chinensis HOM05D001292 ORTHO05D001202 7.9e-13 78.2 204 27.9
Sp1g08320 Schrenkiella parvula HOM05D001292 ORTHO05D001202 1.0e-12 77.8 132 27.3
Aa31LG1G5260 Aethionema arabicum HOM05D001292 ORTHO05D001202 1.4e-12 77.4 132 28.0
Thhalv10006645m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 2.3e-12 76.6 132 28.0
Lalb_Chr18g0060411 Lupinus albus HOM05D001292 ORTHO05D001202 5.1e-12 75.5 128 28.9
Thecc.02G129400 Theobroma cacao HOM05D001292 ORTHO05D001202 5.1e-12 75.5 189 27.5
arahy.Tifrunner.gnm1.ann1.31UHS4 Arachis hypogaea HOM05D001292 ORTHO05D001202 6.7e-12 75.1 127 28.3
arahy.Tifrunner.gnm1.ann1.Y95VYD Arachis hypogaea HOM05D001292 ORTHO05D001202 6.7e-12 75.1 127 28.3
MBI16_g27584_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 1.5e-11 73.9 128 31.2
PSO210G3238 Papaver somniferum HOM05D001292 ORTHO05D001202 1.5e-11 73.9 179 28.5
Hund16858 Selenicereus undatus HOM05D001292 ORTHO05D001202 2.0e-11 73.6 185 27.0
A01p04700 Brassica napus HOM05D001292 ORTHO05D001202 2.5e-11 73.2 159 28.9
BraA01t00453Z Brassica rapa HOM05D001292 ORTHO05D001202 2.5e-11 73.2 159 28.9
Manes.07G038300 Manihot esculenta HOM05D001292 ORTHO05D001202 3.3e-11 72.8 129 30.2
A08p34390 Brassica napus HOM05D001292 ORTHO05D001202 4.3e-11 72.4 134 30.6
ECA232G4048 Erigeron canadensis HOM05D001292 ORTHO05D001202 1.3e-10 70.9 207 25.6
Gohir.A03G177400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.3e-10 70.9 128 30.5
Gorai.005G225700 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.3e-10 70.9 128 31.2
THA.LOC104816798 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 1.3e-10 70.9 133 27.8
BcaNung06984 Brassica carinata HOM05D001292 ORTHO05D001202 1.7e-10 70.5 132 28.8
C08p13140 Brassica napus HOM05D001292 ORTHO05D001202 1.7e-10 70.5 132 28.8
BolC8t48942H Brassica oleracea HOM05D001292 ORTHO05D001202 1.7e-10 70.5 132 28.8
CARHR009700 Cardamine hirsuta HOM05D001292 ORTHO05D001202 1.7e-10 70.5 133 26.3
Sabra17G0029900 Salix brachista HOM05D001292 ORTHO05D001202 1.7e-10 70.5 184 29.3
Gohir.D02G201100 Gossypium hirsutum HOM05D001292 ORTHO05D001202 2.8e-10 69.7 128 31.2
PSO170G5589 Papaver somniferum HOM05D001292 ORTHO05D001202 2.8e-10 69.7 178 28.7
AT1G09730 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 3.7e-10 69.3 133 26.3
Dinv15996 Davidia involucrata HOM05D001292 ORTHO05D001202 3.7e-10 69.3 173 30.6
BraA08t35351Z Brassica rapa HOM05D001292 ORTHO05D001202 6.3e-10 68.6 190 27.4
AL7G17890 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 8.2e-10 68.2 165 30.9
AL1G20280 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 1.4e-09 67.4 129 28.7
Carub.0001s0907 Capsella rubella HOM05D001292 ORTHO05D001202 1.4e-09 67.4 129 28.7
Manes.10G098700 Manihot esculenta HOM05D001292 ORTHO05D001202 1.4e-09 67.4 127 30.7
AT4G33620 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 1.8e-09 67.0 135 31.1
BraA06t23852Z Brassica rapa HOM05D001292 ORTHO05D001202 2.4e-09 66.6 190 26.8
Sp7g31340 Schrenkiella parvula HOM05D001292 ORTHO05D001202 4.1e-09 65.9 159 27.7
PSO675G2554 Papaver somniferum HOM05D001292 ORTHO05D001202 6.9e-09 65.1 188 25.5
Sed0002698 Sechium edule HOM05D001292 ORTHO05D001202 6.9e-09 65.1 121 30.6
Carub.0007s0682 Capsella rubella HOM05D001292 ORTHO05D001202 9.1e-09 64.7 165 29.1
Hund27020 Selenicereus undatus HOM05D001292 ORTHO05D001202 9.1e-09 64.7 188 23.4
BcaC09g52173 Brassica carinata HOM05D001292 ORTHO05D001202 1.2e-08 64.3 198 25.3
C01p05090 Brassica napus HOM05D001292 ORTHO05D001202 1.2e-08 64.3 198 25.3
BolC1t00491H Brassica oleracea HOM05D001292 ORTHO05D001202 1.2e-08 64.3 198 25.3
COL.COLO4_32386 Corchorus olitorius HOM05D001292 ORTHO05D001202 1.2e-08 64.3 189 24.9
Lsat_1_v5_gn_9_75061 Lactuca sativa HOM05D001292 ORTHO05D001202 1.2e-08 64.3 141 25.5
Manes.18G059001 Manihot esculenta HOM05D001292 ORTHO05D001202 1.2e-08 64.3 159 32.1
CsaV3_7G006900 Cucumis sativus L. HOM05D001292 ORTHO05D001202 1.5e-08 63.9 117 30.8
ECA246G3273 Erigeron canadensis HOM05D001292 ORTHO05D001202 2.0e-08 63.5 138 28.3
PSO541G4975 Papaver somniferum HOM05D001292 ORTHO05D001202 2.0e-08 63.5 189 26.5
EL10Ac1g01055 Beta vulgaris HOM05D001292 ORTHO05D001202 3.4e-08 62.8 184 25.5
ClCG09G016070 Citrullus lanatus HOM05D001292 ORTHO05D001202 3.4e-08 62.8 117 31.6
Migut.N02858 Erythranthe guttata HOM05D001292 ORTHO05D001202 1.0e-07 61.2 187 23.5
Lj6g0027662 Lotus japonicus HOM05D001292 ORTHO05D001202 1.0e-07 61.2 128 27.3
A06p06410 Brassica napus HOM05D001292 ORTHO05D001202 2.2e-07 60.1 190 25.8
CARHR241710 Cardamine hirsuta HOM05D001292 ORTHO05D001202 2.2e-07 60.1 161 27.3
Thhalv10024447m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 5.0e-07 58.9 131 26.7
Lsat_1_v5_gn_3_95181 Lactuca sativa HOM05D001292 ORTHO05D001202 1.1e-06 57.8 141 26.2
VMungo0540G0648 Vigna mungo HOM05D001292 ORTHO05D001202 1.4e-06 57.4 116 25.9
Oeu010529.1 Olea europaea HOM05D001292 ORTHO05D001202 2.5e-06 56.6 186 26.3
MELO3C018604.2 Cucumis melo HOM05D001292 ORTHO05D001202 9.4e-06 54.7 128 30.5
Migut.B00556 Erythranthe guttata HOM05D001292 ORTHO05D001202 9.4e-06 54.7 121 32.2


User provided reference genes

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