Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G200000 Glycine max HOM05D008222 ORTHO05D010364 0.0e+00 1297.3 670 100.0
Glyma.10G076700 Glycine max HOM05D008222 ORTHO05D010364 4.5e-294 1014.2 675 81.2
VMungo0720G0042 Vigna mungo HOM05D008222 ORTHO05D010364 4.7e-214 748.4 678 62.1
Phvul.007G270200 Phaseolus vulgaris HOM05D008222 ORTHO05D010364 1.4e-213 746.9 677 63.1
Lj5g0010690 Lotus japonicus HOM05D008222 ORTHO05D010364 1.2e-206 723.8 684 61.4
TPR.G8743 Trifolium pratense HOM05D008222 ORTHO05D010364 2.7e-185 652.9 691 56.2
Medtr1g058110 Medicago truncatula HOM05D008222 ORTHO05D010364 4.7e-158 562.4 691 53.7
Cfa016663 Carpinus fangiana HOM05D008222 ORTHO05D010364 6.7e-128 462.2 706 45.9
Haze_19673 Corylus avellana HOM05D008222 ORTHO05D010364 7.4e-127 458.8 700 45.3
QL07p037571 Quercus lobata HOM05D008222 ORTHO05D010364 4.6e-113 412.9 707 42.7
CiPaw.10G014900 Carya illinoinensis HOM05D008222 ORTHO05D010364 2.3e-112 410.6 700 43.3
Dinv31739 Davidia involucrata HOM05D008222 ORTHO05D010364 4.8e-110 402.9 706 41.6
Atru.chr8.1411 Acer truncatum HOM05D008222 ORTHO05D010364 6.7e-104 382.5 748 38.6
GSVIVG01033924001 Vitis vinifera HOM05D008222 ORTHO05D010364 4.8e-102 376.3 699 41.6
Cpa.g.sc104.69 Carica papaya HOM05D008222 ORTHO05D010364 4.1e-101 373.2 709 41.5
Ciclev10011213m.g Citrus clementina HOM05D008222 ORTHO05D010364 1.0e-99 368.6 692 42.3
Manes.09G049300 Manihot esculenta HOM05D008222 ORTHO05D010364 2.5e-98 364.0 696 41.1
Thecc.05G099900 Theobroma cacao HOM05D008222 ORTHO05D010364 3.2e-98 363.6 700 40.4
TAR633G2678 Trochodendron aralioides HOM05D008222 ORTHO05D010364 1.6e-97 361.3 715 39.2
Potri.006G205800 Populus trichocarpa HOM05D008222 ORTHO05D010364 1.0e-96 358.6 701 40.1
COL.COLO4_29620 Corchorus olitorius HOM05D008222 ORTHO05D010364 4.4e-95 353.2 703 41.0
Sabra06G0158800 Salix brachista HOM05D008222 ORTHO05D010364 4.4e-95 353.2 693 40.4
TAR636G2750 Trochodendron aralioides HOM05D008222 ORTHO05D010364 3.8e-91 340.1 708 39.3
TWI77G0950 Tripterygium wilfordii HOM05D008222 ORTHO05D010364 5.0e-91 339.7 715 36.6
RcHm_v2.0_Chr3g0475181 Rosa chinensis HOM05D008222 ORTHO05D010364 3.5e-84 317.0 692 39.6
Lj1C1035T2 Lonicera japonica HOM05D008222 ORTHO05D010364 4.5e-84 316.6 687 38.7
Nn6g34773 Nelumbo nucifera HOM05D008222 ORTHO05D010364 6.1e-81 306.2 716 37.3
CSS0016714 Camellia sinensis var. sinensis HOM05D008222 ORTHO05D010364 1.4e-80 305.1 726 37.7
CANSAT64G2035 Cannabis sativa HOM05D008222 ORTHO05D010364 1.5e-79 301.6 756 33.9
FAN05G0526 Fragaria x ananassa HOM05D008222 ORTHO05D010364 9.8e-79 298.9 687 37.8
FvH4_6g19810 Fragaria vesca HOM05D008222 ORTHO05D010364 4.8e-78 296.6 684 38.2
Oeu010753.1 Olea europaea HOM05D008222 ORTHO05D010364 4.8e-78 296.6 707 32.7
FAN14G0765 Fragaria x ananassa HOM05D008222 ORTHO05D010364 1.4e-77 295.0 684 38.6
FAN05G0780 Fragaria x ananassa HOM05D008222 ORTHO05D010364 4.1e-77 293.5 685 37.1
FAN02G2041 Fragaria x ananassa HOM05D008222 ORTHO05D010364 9.1e-77 292.4 687 37.8
Oeu060355.1 Olea europaea HOM05D008222 ORTHO05D010364 1.2e-76 292.0 700 34.0
Oeu010756.1 Olea europaea HOM05D008222 ORTHO05D010364 6.5e-75 286.2 701 32.1
DCAR_020725 Daucus carota HOM05D008222 ORTHO05D010364 2.5e-74 284.3 710 34.2
FAN09G4126 Fragaria x ananassa HOM05D008222 ORTHO05D010364 2.7e-73 280.8 690 37.5
MSTRG.10386 Avicennia marina HOM05D008222 ORTHO05D010364 4.1e-69 266.9 704 34.1
CiPaw.09G018200 Carya illinoinensis HOM05D008222 ORTHO05D010364 7.7e-68 262.7 572 37.6
MD12G1033800 Malus domestica HOM05D008222 ORTHO05D010364 3.8e-67 260.4 569 35.1
MBI17_g16777_MAGBIO Magnolia biondii HOM05D008222 ORTHO05D010364 5.0e-67 260.0 690 35.2
Hund03869 Selenicereus undatus HOM05D008222 ORTHO05D010364 1.3e-54 218.8 785 29.3
AUR62006264 Chenopodium quinoa HOM05D008222 ORTHO05D010364 1.4e-53 215.3 715 28.4
EL10Ac7g16820 Beta vulgaris HOM05D008222 ORTHO05D010364 1.6e-52 211.8 807 30.0
Lalb_Chr02g0154681 Lupinus albus HOM05D008222 ORTHO05D010364 1.1e-50 205.7 346 41.0
Sc20g0006580 Simmondsia chinensis HOM05D008222 ORTHO05D010364 1.8e-48 198.4 678 31.6
AUR62028514 Chenopodium quinoa HOM05D008222 ORTHO05D010364 2.6e-47 194.5 818 29.8
Oeu010754.1 Olea europaea HOM05D008222 ORTHO05D010364 4.4e-47 193.7 525 30.5
Aqoxy4G02694 Aquilegia oxysepala HOM05D008222 ORTHO05D010364 1.7e-46 191.8 725 31.2
SGA_v2.0_scaffold184G40000 Striga asiatica HOM05D008222 ORTHO05D010364 4.9e-46 190.3 679 30.0
HPP92_009786 Vanilla planifolia HOM05D008222 ORTHO05D010364 2.1e-44 184.9 702 29.1
CDE06G1815 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 2.0e-39 168.3 675 29.8
CDE08G0440 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 4.9e-38 163.7 676 29.7
Os02g0536400 Oryza sativa ssp. japonica HOM05D008222 ORTHO05D010364 8.9e-32 142.9 724 28.7
SEGI_05246 Sequoiadendron giganteum HOM05D008222 ORTHO05D010364 1.3e-30 139.0 774 27.9
ATR0772G019 Amborella trichopoda HOM05D008222 ORTHO05D010364 1.2e-28 132.5 712 27.9
ECA233G4923 Erigeron canadensis HOM05D008222 ORTHO05D010364 6.0e-28 130.2 747 27.2
Psat6g082000 Pisum sativum HOM05D008222 ORTHO05D010364 6.4e-22 110.2 128 47.7
unitig_8.g3557 Utricularia gibba HOM05D008222 ORTHO05D010364 2.1e-20 105.1 251 32.3
AagrBONN_evm.TU.Sc2ySwM_368.1895 Anthoceros agrestis HOM05D008222 ORTHO05D010364 3.0e-11 74.7 52 65.4
A03p20610 Brassica napus HOM05D002912 ORTHO05D003191 1.3e-06 59.3 72 43.1
C03p24210 Brassica napus HOM05D002912 ORTHO05D003191 1.3e-06 59.3 72 43.1
BolC3t14815H Brassica oleracea HOM05D002912 ORTHO05D003191 1.3e-06 59.3 72 43.1
BraA03t11303Z Brassica rapa HOM05D002912 ORTHO05D003191 1.3e-06 59.3 72 43.1
Thhalv10017989m.g Eutrema salsugineum HOM05D002912 ORTHO05D003191 1.3e-06 59.3 72 43.1
Sp4g19660 Schrenkiella parvula HOM05D002912 ORTHO05D003191 1.3e-06 59.3 72 43.1
Carub.0004s1925 Capsella rubella HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 43.1
CARHR132250 Cardamine hirsuta HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 43.1
Lj1g0023882 Lotus japonicus HOM05D002912 ORTHO05D003191 1.7e-06 58.9 84 42.9
Migut.L01640 Erythranthe guttata HOM05D002912 ORTHO05D003191 2.9e-06 58.2 87 40.2
Nitab4.5_0000914g0130 Nicotiana tabacum HOM05D002912 ORTHO05D003191 2.9e-06 58.2 84 40.5
Gorai.012G091800 Gossypium raimondii HOM05D002912 ORTHO05D003191 4.9e-06 57.4 84 39.3
Aa31LG5G22680 Aethionema arabicum HOM05D002912 ORTHO05D003191 6.5e-06 57.0 72 41.7
C06p21470 Brassica napus HOM05D002912 ORTHO05D003191 6.5e-06 57.0 72 43.1
BolC6t37329H Brassica oleracea HOM05D002912 ORTHO05D003191 6.5e-06 57.0 72 43.1
BraA07t29849Z Brassica rapa HOM05D002912 ORTHO05D003191 6.5e-06 57.0 72 43.1
CARHR163400 Cardamine hirsuta HOM05D002912 ORTHO05D003191 6.5e-06 57.0 85 41.2
Sc20g0002330 Simmondsia chinensis HOM05D002912 ORTHO05D003191 6.5e-06 57.0 84 39.3
CiPaw.01G279300 Carya illinoinensis HOM05D002912 ORTHO05D003191 8.4e-06 56.6 84 40.5
COL.COLO4_05801 Corchorus olitorius HOM05D002912 ORTHO05D003191 8.4e-06 56.6 84 40.5
Duzib106G1529 Durio zibethinus HOM05D002912 ORTHO05D003191 8.4e-06 56.6 84 40.5
HanXRQChr08g0219481 Helianthus annuus HOM05D002912 ORTHO05D003191 8.4e-06 56.6 85 38.8
Oeu037763.2 Olea europaea HOM05D002912 ORTHO05D003191 8.4e-06 56.6 84 40.5
Peaxi162Scf00015g00272 Petunia axillaris HOM05D002912 ORTHO05D003191 8.4e-06 56.6 84 40.5
THA.LOC104806511 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 8.4e-06 56.6 72 41.7


User provided reference genes

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