Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G141101 Glycine max HOM05D005373 ORTHO05D006617 1.1e-66 256.5 127 100.0
Glyma.10G032800 Glycine max HOM05D005373 ORTHO05D006617 9.6e-52 206.8 104 97.1
arahy.Tifrunner.gnm1.ann1.W8F73Z Arachis hypogaea HOM05D005373 ORTHO05D006617 1.2e-49 199.9 106 92.5
FvH4_2g22310 Fragaria vesca HOM05D005373 ORTHO05D006617 7.6e-49 197.2 104 89.4
FAN20G0018 Fragaria x ananassa HOM05D005373 ORTHO05D006617 7.6e-49 197.2 104 89.4
FAN24G2777 Fragaria x ananassa HOM05D005373 ORTHO05D006617 7.6e-49 197.2 104 89.4
RcHm_v2.0_Chr6g0289311 Rosa chinensis HOM05D005373 ORTHO05D006617 1.7e-48 196.1 104 89.4
CiPaw.02G033000 Carya illinoinensis HOM05D005373 ORTHO05D006617 2.9e-48 195.3 104 90.4
CiPaw.04G182700 Carya illinoinensis HOM05D005373 ORTHO05D006617 2.9e-48 195.3 104 90.4
TPR.G35732 Trifolium pratense HOM05D005373 ORTHO05D006617 4.9e-48 194.5 104 91.3
Medtr1g070460 Medicago truncatula HOM05D005373 ORTHO05D006617 6.4e-48 194.1 104 91.3
Cfa002338 Carpinus fangiana HOM05D005373 ORTHO05D006617 8.4e-48 193.7 104 89.4
FAN15G3255 Fragaria x ananassa HOM05D005373 ORTHO05D006617 8.4e-48 193.7 104 88.5
MD05G1204500 Malus domestica HOM05D005373 ORTHO05D006617 1.4e-47 193.0 104 87.5
MD10G1191500 Malus domestica HOM05D005373 ORTHO05D006617 1.4e-47 193.0 104 87.5
QL12p042863 Quercus lobata HOM05D005373 ORTHO05D006617 1.4e-47 193.0 103 89.3
TPR.G2468 Trifolium pratense HOM05D005373 ORTHO05D006617 1.9e-47 192.6 104 89.4
CANSAT01G0877 Cannabis sativa HOM05D005373 ORTHO05D006617 2.4e-47 192.2 104 86.5
Lj5g0027817 Lotus japonicus HOM05D005373 ORTHO05D006617 2.4e-47 192.2 104 89.4
Psat4g197520 Pisum sativum HOM05D005373 ORTHO05D006617 2.4e-47 192.2 104 89.4
BcaB01g00749 Brassica carinata HOM05D005373 ORTHO05D006617 3.2e-47 191.8 104 87.5
Prupe.8G230800 Prunus persica HOM05D005373 ORTHO05D006617 3.2e-47 191.8 104 85.6
BcaC07g39386 Brassica carinata HOM05D005373 ORTHO05D006617 4.2e-47 191.4 104 87.5
A06p18650 Brassica napus HOM05D005373 ORTHO05D006617 4.2e-47 191.4 104 87.5
C08p24090 Brassica napus HOM05D005373 ORTHO05D006617 4.2e-47 191.4 104 87.5
BolC8t50030H Brassica oleracea HOM05D005373 ORTHO05D006617 4.2e-47 191.4 104 87.5
BraA06t24943Z Brassica rapa HOM05D005373 ORTHO05D006617 4.2e-47 191.4 104 87.5
QL04p081438 Quercus lobata HOM05D005373 ORTHO05D006617 4.2e-47 191.4 103 88.3
CSS0009352 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 7.1e-47 190.7 104 88.5
Glyma.08G346000 Glycine max HOM05D005373 ORTHO05D006617 7.1e-47 190.7 104 87.5
GSVIVG01000751001 Vitis vinifera HOM05D005373 ORTHO05D006617 9.3e-47 190.3 104 88.5
AT3G49100 Arabidopsis thaliana HOM05D005373 ORTHO05D006617 1.2e-46 189.9 104 87.5
Carub.0005s1529 Capsella rubella HOM05D005373 ORTHO05D006617 1.2e-46 189.9 104 87.5
Sp5g12980 Schrenkiella parvula HOM05D005373 ORTHO05D006617 1.2e-46 189.9 104 87.5
AL5G28610 Arabidopsis lyrata HOM05D005373 ORTHO05D006617 2.1e-46 189.1 104 86.5
CSS0017854 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 2.1e-46 189.1 104 87.5
Glyma.18G156300 Glycine max HOM05D005373 ORTHO05D006617 2.1e-46 189.1 104 86.5
Phvul.008G134200 Phaseolus vulgaris HOM05D005373 ORTHO05D006617 2.1e-46 189.1 104 86.5
Thhalv10010849m.g Eutrema salsugineum HOM05D005373 ORTHO05D006617 3.5e-46 188.3 104 86.5
arahy.Tifrunner.gnm1.ann1.ZBI3RA Arachis hypogaea HOM05D005373 ORTHO05D006617 4.6e-46 188.0 132 75.8
CARHR157930 Cardamine hirsuta HOM05D005373 ORTHO05D006617 4.6e-46 188.0 104 86.5
THA.LOC104818165 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 4.6e-46 188.0 104 84.6
EL10Ac1g00710 Beta vulgaris HOM05D005373 ORTHO05D006617 7.8e-46 187.2 104 85.6
Dinv22468 Davidia involucrata HOM05D005373 ORTHO05D006617 7.8e-46 187.2 104 86.5
Sc02g0003290 Simmondsia chinensis HOM05D005373 ORTHO05D006617 7.8e-46 187.2 104 86.5
Thecc.01G266100 Theobroma cacao HOM05D005373 ORTHO05D006617 1.0e-45 186.8 104 84.6
Duzib211G0177 Durio zibethinus HOM05D005373 ORTHO05D006617 1.3e-45 186.4 104 84.6
Lalb_Chr03g0041301 Lupinus albus HOM05D005373 ORTHO05D006617 1.3e-45 186.4 104 83.7
Manes.01G200900 Manihot esculenta HOM05D005373 ORTHO05D006617 1.7e-45 186.0 104 85.6
Sed0003924 Sechium edule HOM05D005373 ORTHO05D006617 1.7e-45 186.0 104 85.6
AUR62013793 Chenopodium quinoa HOM05D005373 ORTHO05D006617 2.3e-45 185.7 104 84.6
AUR62023362 Chenopodium quinoa HOM05D005373 ORTHO05D006617 2.3e-45 185.7 104 84.6
COL.COLO4_08280 Corchorus olitorius HOM05D005373 ORTHO05D006617 2.3e-45 185.7 104 84.6
COL.COLO4_29457 Corchorus olitorius HOM05D005373 ORTHO05D006617 2.3e-45 185.7 104 84.6
Rhsim12G0063100 Rhododendron simsii HOM05D005373 ORTHO05D006617 2.3e-45 185.7 104 84.6
THA.LOC104821383 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 2.3e-45 185.7 104 84.6
Rhsim01G0268500 Rhododendron simsii HOM05D005373 ORTHO05D006617 3.0e-45 185.3 104 83.7
Actinidia24948 Actinidia chinensis HOM05D005373 ORTHO05D006617 3.9e-45 184.9 104 84.6
BcaC01g02388 Brassica carinata HOM05D005373 ORTHO05D006617 3.9e-45 184.9 104 83.7
BolC3t18839H Brassica oleracea HOM05D005373 ORTHO05D006617 3.9e-45 184.9 104 83.7
Lalb_Chr19g0125981 Lupinus albus HOM05D005373 ORTHO05D006617 3.9e-45 184.9 104 83.7
CANSAT11G1068 Cannabis sativa HOM05D005373 ORTHO05D006617 5.1e-45 184.5 104 83.7
Cpa.g.sc52.142 Carica papaya HOM05D005373 ORTHO05D006617 5.1e-45 184.5 104 83.7
BraA06t25747Z Brassica rapa HOM05D005373 ORTHO05D006617 6.6e-45 184.1 104 83.7
TAR365G0879 Trochodendron aralioides HOM05D005373 ORTHO05D006617 6.6e-45 184.1 104 84.6
A06p28050 Brassica napus HOM05D005373 ORTHO05D006617 8.7e-45 183.7 104 83.7
Gohir.A08G188600 Gossypium hirsutum HOM05D005373 ORTHO05D006617 8.7e-45 183.7 104 82.7
Gohir.D08G207000 Gossypium hirsutum HOM05D005373 ORTHO05D006617 8.7e-45 183.7 104 82.7
Gorai.004G219200 Gossypium raimondii HOM05D005373 ORTHO05D006617 8.7e-45 183.7 104 82.7
Nn1g02594 Nelumbo nucifera HOM05D005373 ORTHO05D006617 8.7e-45 183.7 104 83.7
MELO3C014306.2 Cucumis melo HOM05D005373 ORTHO05D006617 1.1e-44 183.3 104 84.6
CsaV3_2G013670 Cucumis sativus L. HOM05D005373 ORTHO05D006617 1.1e-44 183.3 104 84.6
BcaB02g09576 Brassica carinata HOM05D005373 ORTHO05D006617 1.9e-44 182.6 104 82.7
C03p65820 Brassica napus HOM05D005373 ORTHO05D006617 1.9e-44 182.6 104 82.7
Atru.chr5.1594 Acer truncatum HOM05D005373 ORTHO05D006617 3.3e-44 181.8 104 81.7
Actinidia21168 Actinidia chinensis HOM05D005373 ORTHO05D006617 3.3e-44 181.8 104 82.7
Cc01_g18740 Coffea canephora HOM05D005373 ORTHO05D006617 4.3e-44 181.4 104 81.7
Hund17126 Selenicereus undatus HOM05D005373 ORTHO05D006617 4.3e-44 181.4 104 83.7
ClCG07G000650 Citrullus lanatus HOM05D005373 ORTHO05D006617 5.6e-44 181.0 104 82.7
Dinv34577 Davidia involucrata HOM05D005373 ORTHO05D006617 5.6e-44 181.0 104 83.7
PGR102G1093 Punica granatum HOM05D005373 ORTHO05D006617 5.6e-44 181.0 104 82.7
Aa31LG4G17560 Aethionema arabicum HOM05D005373 ORTHO05D006617 7.3e-44 180.6 105 83.8
Haze_24544 Corylus avellana HOM05D005373 ORTHO05D006617 7.3e-44 180.6 130 72.3
Eucgr.B01502 Eucalyptus grandis HOM05D005373 ORTHO05D006617 9.6e-44 180.3 104 81.7
Potri.005G219400 Populus trichocarpa HOM05D005373 ORTHO05D006617 9.6e-44 180.3 104 80.8
vmacro11045 Vaccinium macrocarpon HOM05D005373 ORTHO05D006617 9.6e-44 180.3 104 81.7
Ciclev10023009m.g Citrus clementina HOM05D005373 ORTHO05D006617 1.3e-43 179.9 104 81.7
Gorai.007G142700 Gossypium raimondii HOM05D005373 ORTHO05D006617 1.3e-43 179.9 104 82.7
Potri.002G043600 Populus trichocarpa HOM05D005373 ORTHO05D006617 1.3e-43 179.9 104 82.7
Duzib138G0987 Durio zibethinus HOM05D005373 ORTHO05D006617 2.8e-43 178.7 105 83.8
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 3.6e-43 178.3 113 74.3
PSO832G1599 Papaver somniferum HOM05D005373 ORTHO05D006617 3.6e-43 178.3 104 79.8
ATR0665G560 Amborella trichopoda HOM05D005373 ORTHO05D006617 4.8e-43 177.9 104 81.7
MSTRG.18297 Avicennia marina HOM05D005373 ORTHO05D006617 4.8e-43 177.9 112 72.3
TWI18G0681 Tripterygium wilfordii HOM05D005373 ORTHO05D006617 4.8e-43 177.9 104 79.8
TAR633G1352 Trochodendron aralioides HOM05D005373 ORTHO05D006617 6.2e-43 177.6 104 79.8
MBI04_g39243_MAGBIO Magnolia biondii HOM05D005373 ORTHO05D006617 8.1e-43 177.2 104 79.8
DCAR_012520 Daucus carota HOM05D005373 ORTHO05D006617 1.1e-42 176.8 104 81.7
Nn3g19526 Nelumbo nucifera HOM05D005373 ORTHO05D006617 2.4e-42 175.6 110 78.2
HPP92_008005 Vanilla planifolia HOM05D005373 ORTHO05D006617 2.4e-42 175.6 104 78.8
Solyc12g099820.1 Solanum lycopersicum HOM05D005373 ORTHO05D006617 3.1e-42 175.3 104 79.8
Sopen12g034450 Solanum pennellii HOM05D005373 ORTHO05D006617 3.1e-42 175.3 104 79.8
CAN.G575.93 Capsicum annuum HOM05D005373 ORTHO05D006617 6.9e-42 174.1 104 80.8
Peaxi162Scf00700g00135 Petunia axillaris HOM05D005373 ORTHO05D006617 6.9e-42 174.1 104 79.8
unitig_26.g10142 Utricularia gibba HOM05D005373 ORTHO05D006617 6.9e-42 174.1 116 70.7
Aqoxy2G03557 Aquilegia oxysepala HOM05D005373 ORTHO05D006617 9.0e-42 173.7 104 77.9
SGA_v2.0_scaffold1G00570 Striga asiatica HOM05D005373 ORTHO05D006617 1.2e-41 173.3 104 77.9
Nitab4.5_0002310g0090 Nicotiana tabacum HOM05D005373 ORTHO05D006617 2.0e-41 172.6 104 78.8
Zm00001eb281280 Zea mays HOM05D005373 ORTHO05D006617 2.0e-41 172.6 103 77.7
SGA_v2.0_scaffold138G35268 Striga asiatica HOM05D005373 ORTHO05D006617 2.6e-41 172.2 104 77.9
PGSC0003DMG400004717 Solanum tuberosum HOM05D005373 ORTHO05D006617 3.4e-41 171.8 106 79.2
PSO063G5966 Papaver somniferum HOM05D005373 ORTHO05D006617 4.5e-41 171.4 104 79.8
Migut.D00388 Erythranthe guttata HOM05D005373 ORTHO05D006617 1.3e-40 169.9 104 76.0
SalBow4G0280 Salvia bowleyana HOM05D005373 ORTHO05D006617 1.7e-40 169.5 104 76.0
Lsat_1_v5_gn_5_186641 Lactuca sativa HOM05D005373 ORTHO05D006617 6.4e-40 167.5 104 79.8
HanXRQChr01g0005311 Helianthus annuus HOM05D005373 ORTHO05D006617 8.4e-40 167.2 104 79.8
HanXRQChr06g0164391 Helianthus annuus HOM05D005373 ORTHO05D006617 8.4e-40 167.2 104 79.8
Zm00001eb379840 Zea mays HOM05D005373 ORTHO05D006617 1.1e-39 166.8 104 76.0
MSTRG.21508 Avicennia marina HOM05D005373 ORTHO05D006617 1.9e-39 166.0 104 75.0
ECA248G2609 Erigeron canadensis HOM05D005373 ORTHO05D006617 4.2e-39 164.9 104 78.8
Ah.05g177620 Amaranthus hybridus HOM05D005373 ORTHO05D006617 7.9e-38 160.6 167 53.9
Migut.N02186 Erythranthe guttata HOM05D005373 ORTHO05D006617 8.7e-37 157.1 104 69.2
Hma1.2p1_1029F.1_g249680 Hydrangea macrophylla HOM05D005373 ORTHO05D006617 8.7e-37 157.1 78 93.6
AagrBONN_evm.TU.Sc2ySwM_344.4653 Anthoceros agrestis HOM05D005373 ORTHO05D006617 3.3e-36 155.2 104 70.2
Mapoly0042s0050 Marchantia polymorpha HOM05D005373 ORTHO05D006617 1.1e-34 150.2 104 67.3
Pp3c14_7880 Physcomitrium patens HOM05D005373 ORTHO05D006617 4.5e-33 144.8 114 61.4
CSS0047138 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 2.9e-32 142.1 104 72.1
Pp3c2_1790 Physcomitrium patens HOM05D005373 ORTHO05D006617 6.4e-32 141.0 104 62.5
CDE06G2230 Ceratophyllum demersum HOM05D005373 ORTHO05D006617 9.3e-31 137.1 88 73.9
Gohir.A11G127860 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.3e-27 126.7 76 80.3
Gohir.D11G133500 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.3e-27 126.7 76 80.3
Sabra02G0035300 Salix brachista HOM05D005373 ORTHO05D006617 1.3e-27 126.7 91 70.3
CBR_g18652 Chara braunii HOM05D005373 ORTHO05D006617 3.1e-26 122.1 105 59.0
Atru.chr7.944 Acer truncatum HOM05D005373 ORTHO05D006617 1.6e-22 109.8 57 86.0
Sed0007692 Sechium edule HOM05D005373 ORTHO05D006617 2.2e-19 99.4 79 65.8
Gohir.A12G149900 Gossypium hirsutum HOM05D005373 ORTHO05D006617 5.3e-18 94.7 57 78.9
Atru.chr2.3918 Acer truncatum HOM05D005373 ORTHO05D006617 5.9e-17 91.3 68 69.1
PRCOL_00002130 Prasinoderma coloniale HOM05D005373 ORTHO05D006617 1.0e-16 90.5 82 51.2
Cre12.g546250 Chlamydomonas reinhardtii HOM05D005373 ORTHO05D006617 8.5e-16 87.4 75 50.7
CSS0032008 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 3.2e-15 85.5 53 81.1
TWI36G0734 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 4.2e-15 85.1 56 75.0
Gohir.A10G156200 Gossypium hirsutum HOM05D005373 ORTHO05D006617 2.7e-14 82.4 55 76.4
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 3.3e-12 75.5 53 75.5


User provided reference genes

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