Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G139300 Glycine max HOM05D013640 ORTHO05D014229 1.8e-266 922.2 502 100.0
Glyma.02G139432 Glycine max HOM05D013640 ORTHO05D014229 3.7e-163 578.9 478 66.5
Glyma.02G139200 Glycine max HOM05D013640 ORTHO05D014229 4.0e-101 372.9 574 44.8
Glyma.02G139366 Glycine max HOM05D013640 ORTHO05D014229 3.9e-88 329.7 459 46.6
Glyma.17G171600 Glycine max HOM05D013640 ORTHO05D014229 9.2e-74 282.0 203 67.5
Phvul.003G059200 Phaseolus vulgaris HOM05D013640 ORTHO05D014229 9.3e-66 255.4 442 38.9
VMungo0251G1126 Vigna mungo HOM05D013640 ORTHO05D014229 3.6e-62 243.4 433 37.4
VMungo0251G2386 Vigna mungo HOM05D013640 ORTHO05D014229 6.9e-61 239.2 439 39.2
Glyma.20G031800 Glycine max HOM05D002984 ORTHO05D014229 1.9e-39 167.9 511 31.1
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 2.0e-36 157.9 202 43.6
VMungo0464G0094 Vigna mungo HOM05D002984 ORTHO05D014229 7.7e-36 156.0 198 41.9
Phvul.004G160600 Phaseolus vulgaris HOM05D002984 ORTHO05D014229 1.4e-34 151.8 216 43.5
Glyma.07G206066 Glycine max HOM05D013640 ORTHO05D014229 5.5e-34 149.8 153 51.0
Phvul.003G059300 Phaseolus vulgaris HOM05D013640 ORTHO05D014229 2.1e-33 147.9 315 39.7
Lj2g0016414 Lotus japonicus HOM05D002984 ORTHO05D022868 5.9e-28 129.8 225 38.7
Psat1g039440 Pisum sativum HOM05D002984 ORTHO05D022868 4.2e-26 123.6 525 25.3
Phvul.004G160500 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 9.4e-26 122.5 191 37.7
Medtr6g085130 Medicago truncatula HOM05D002984 ORTHO05D022868 2.1e-25 121.3 539 28.6
Medtr6g085100 Medicago truncatula HOM05D002984 ORTHO05D022868 1.3e-22 112.1 575 29.4
Lalb_Chr14g0371321 Lupinus albus HOM05D002984 ORTHO05D003561 1.7e-22 111.7 135 39.3
Medtr6g085080 Medicago truncatula HOM05D002984 ORTHO05D022868 7.0e-21 106.3 522 28.4
arahy.Tifrunner.gnm1.ann1.53ZNG0 Arachis hypogaea HOM05D002984 ORTHO05D003561 6.5e-19 99.8 131 36.6
arahy.Tifrunner.gnm1.ann1.48S2GI Arachis hypogaea HOM05D002984 ORTHO05D003561 8.5e-19 99.4 194 32.0
VMungo0464G1061 Vigna mungo HOM05D002984 ORTHO05D003561 8.0e-17 92.8 202 33.7
Sc04g0003680 Simmondsia chinensis HOM05D002984 ORTHO05D003561 4.1e-13 80.5 179 27.4
EL10Ac3g05929 Beta vulgaris HOM05D002984 ORTHO05D003561 3.8e-11 73.9 158 28.5
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 3.8e-11 73.9 125 30.4
SGA_v2.0_scaffold124G33581 Striga asiatica HOM05D002984 ORTHO05D003561 3.8e-11 73.9 125 30.4
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 1.5e-10 72.0 125 30.4
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 1.5e-10 72.0 125 30.4
Glyma.01G086201 Glycine max HOM05D002984 ORTHO05D003561 1.5e-10 72.0 125 30.4
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 1.5e-10 72.0 125 30.4
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 1.5e-10 72.0 158 27.8
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 1.5e-10 72.0 158 27.8
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 1.9e-10 71.6 158 27.8
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 1.9e-10 71.6 125 30.4
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 1.9e-10 71.6 125 30.4
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 2.5e-10 71.2 125 29.6
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 2.5e-10 71.2 156 27.6
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 2.5e-10 71.2 125 29.6
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 2.5e-10 71.2 161 28.6
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 3.2e-10 70.9 125 29.6
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 3.2e-10 70.9 125 30.4
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 3.2e-10 70.9 125 29.6
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 3.2e-10 70.9 136 29.4
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 4.2e-10 70.5 125 28.8
Actinidia14860 Actinidia chinensis HOM05D002984 ORTHO05D003561 4.2e-10 70.5 125 29.6
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 4.2e-10 70.5 125 29.6
AUR62015392 Chenopodium quinoa HOM05D002984 ORTHO05D003561 4.2e-10 70.5 158 28.5
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 4.2e-10 70.5 125 29.6
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 4.2e-10 70.5 125 29.6
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 4.2e-10 70.5 125 29.6
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 4.2e-10 70.5 159 28.3
Oeu010774.1 Olea europaea HOM05D002984 ORTHO05D003561 4.2e-10 70.5 125 29.6
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 4.2e-10 70.5 125 29.6
QL01p044747 Quercus lobata HOM05D002984 ORTHO05D003561 4.2e-10 70.5 125 29.6
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 5.5e-10 70.1 125 29.6
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 5.5e-10 70.1 125 29.6
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 5.5e-10 70.1 125 29.6
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 5.5e-10 70.1 125 29.6
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 5.5e-10 70.1 125 29.6
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 5.5e-10 70.1 125 29.6
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 5.5e-10 70.1 125 29.6
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 5.5e-10 70.1 125 28.8
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 5.5e-10 70.1 164 28.0
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 5.5e-10 70.1 125 29.6
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 5.5e-10 70.1 179 26.3
Lalb_Chr11g0074751 Lupinus albus HOM05D013640 ORTHO05D014229 7.2e-10 69.7 60 51.7
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 9.4e-10 69.3 121 31.4
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 1.2e-09 68.9 125 28.8
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 1.2e-09 68.9 125 28.8
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 1.2e-09 68.9 125 28.8
CSS0024955 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 1.6e-09 68.6 125 31.2
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.6e-09 68.6 205 26.3
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 1.6e-09 68.6 205 26.3
Lj6C764G13 Lonicera japonica HOM05D002984 ORTHO05D003561 1.6e-09 68.6 176 27.3
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 1.6e-09 68.6 125 28.0
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 1.6e-09 68.6 184 25.5
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 1.6e-09 68.6 180 29.4
Medtr5g054690 Medicago truncatula HOM05D002984 ORTHO05D003561 2.1e-09 68.2 121 30.6
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 2.1e-09 68.2 125 28.0
SMO118G0238 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 2.1e-09 68.2 134 27.6
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 2.1e-09 68.2 125 28.8
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 2.7e-09 67.8 125 28.8
Lj6A762T42 Lonicera japonica HOM05D002984 ORTHO05D003561 2.7e-09 67.8 175 27.4
Mapoly0022s0114 Marchantia polymorpha HOM05D002984 ORTHO05D003561 2.7e-09 67.8 134 29.1
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 2.7e-09 67.8 164 27.4
QL10p023587 Quercus lobata HOM05D002984 ORTHO05D014229 2.7e-09 67.8 87 36.8
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 2.7e-09 67.8 125 28.0
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 2.7e-09 67.8 125 28.0
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 3.6e-09 67.4 125 28.8
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 3.6e-09 67.4 119 30.3
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 3.6e-09 67.4 125 28.8
BcaC05g26443 Brassica carinata HOM05D002984 ORTHO05D003561 4.7e-09 67.0 125 28.0
A09p39560 Brassica napus HOM05D002984 ORTHO05D003561 4.7e-09 67.0 125 28.0
C05p24920 Brassica napus HOM05D002984 ORTHO05D003561 4.7e-09 67.0 125 28.0
BolC5t31221H Brassica oleracea HOM05D002984 ORTHO05D003561 4.7e-09 67.0 125 28.0
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 4.7e-09 67.0 125 28.0
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 4.7e-09 67.0 167 27.5
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 4.7e-09 67.0 120 30.0
MBI01_g09372_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 4.7e-09 67.0 139 28.1
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 4.7e-09 67.0 163 26.4
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 6.1e-09 66.6 125 28.0
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 6.1e-09 66.6 125 28.0
BcaB03g12090 Brassica carinata HOM05D002984 ORTHO05D003561 6.1e-09 66.6 125 28.0
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 6.1e-09 66.6 125 28.0
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 6.1e-09 66.6 125 28.0
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 6.1e-09 66.6 125 28.0
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 6.1e-09 66.6 178 25.8
Aa31LG7G8960 Aethionema arabicum HOM05D002984 ORTHO05D003561 8.0e-09 66.2 125 28.0
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 8.0e-09 66.2 167 26.3
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 8.0e-09 66.2 125 28.0
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 8.0e-09 66.2 121 29.8
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 8.0e-09 66.2 125 28.0
Ah.13g072880 Amaranthus hybridus HOM05D002984 ORTHO05D003561 1.0e-08 65.9 151 27.2
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 1.0e-08 65.9 125 28.8
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 1.0e-08 65.9 125 28.0
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 1.8e-08 65.1 125 28.0
PSO017G3087 Papaver somniferum HOM05D002984 ORTHO05D003561 2.3e-08 64.7 136 27.2
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 2.3e-08 64.7 122 28.7
Medtr1g013000 Medicago truncatula HOM05D002984 ORTHO05D003561 4.0e-08 63.9 211 26.1
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 4.0e-08 63.9 125 28.0
Dinv04490 Davidia involucrata HOM05D002984 ORTHO05D003561 6.8e-08 63.2 100 32.0
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 6.8e-08 63.2 172 26.7
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 6.8e-08 63.2 172 26.7
SEGI_39328 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 6.8e-08 63.2 125 28.8
ClCG05G022960 Citrullus lanatus HOM05D002984 ORTHO05D000550 1.2e-07 62.4 163 26.4
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 1.2e-07 62.4 120 28.3
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 1.5e-07 62.0 118 28.8
Hund03157 Selenicereus undatus HOM05D002984 ORTHO05D003561 2.0e-07 61.6 158 26.6
FvH4_5g01900 Fragaria vesca HOM05D002984 ORTHO05D003561 3.4e-07 60.8 206 25.7
FvH4_6g01630 Fragaria vesca HOM05D002984 ORTHO05D003561 5.7e-07 60.1 128 28.1
Pp3c25_2660 Physcomitrium patens HOM05D002984 ORTHO05D003561 7.5e-07 59.7 134 26.9
Lsat_1_v5_gn_4_19021 Lactuca sativa HOM05D002984 ORTHO05D003561 9.7e-07 59.3 118 28.8
BcaC05g26654 Brassica carinata HOM05D002984 ORTHO05D003561 1.3e-06 58.9 217 25.8
CDE08G0495 Ceratophyllum demersum HOM05D002984 ORTHO05D003561 3.7e-06 57.4 126 27.0


User provided reference genes

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