Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 2.0e-220 769.6 698 100.0
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 6.2e-161 572.0 704 83.4
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 2.5e-138 496.9 704 78.4
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.1e-128 464.9 746 73.6
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 2.7e-124 450.3 702 75.1
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 3.0e-123 446.8 694 75.5
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.5e-119 433.3 705 73.5
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.4e-112 410.6 638 77.6
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 5.3e-112 409.5 638 77.4
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 3.8e-110 403.3 712 72.9
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 9.1e-104 382.1 704 73.0
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 2.9e-102 377.1 509 92.9
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 4.2e-101 373.2 624 76.4
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 1.0e-99 368.6 628 74.5
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.2e-98 365.2 692 71.1
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.7e-97 361.3 627 74.6
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.4e-96 358.2 623 71.1
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 5.4e-96 356.3 628 74.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 1.6e-95 354.8 615 75.6
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.0e-95 354.4 619 74.0
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.9e-95 352.8 626 74.1
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 3.8e-94 350.1 626 74.1
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 8.6e-94 349.0 625 74.6
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 1.1e-93 348.6 622 74.1
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.9e-93 347.8 285 63.2
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 3.6e-92 343.6 626 68.5
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 3.6e-92 343.6 619 74.2
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 4.7e-92 343.2 627 73.7
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 5.2e-91 339.7 630 72.7
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.2e-90 338.6 630 69.2
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 1.3e-89 335.1 620 72.9
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 6.4e-89 332.8 623 62.4
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 8.3e-89 332.4 627 72.7
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 8.3e-89 332.4 624 73.1
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 8.3e-89 332.4 552 79.5
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 2.0e-87 327.8 619 71.6
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 3.5e-87 327.0 629 71.7
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 7.8e-87 325.9 626 72.5
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.7e-86 324.7 629 71.5
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 1.7e-86 324.7 614 73.0
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 5.0e-86 323.2 629 71.5
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 3.6e-84 317.0 627 70.5
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 8.0e-84 315.8 615 72.5
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.8e-83 314.7 625 72.0
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 2.3e-83 314.3 629 72.0
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 5.2e-83 313.2 275 56.4
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.2e-82 312.0 619 71.4
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 2.6e-82 310.8 276 56.5
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 4.4e-82 310.1 627 72.1
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.3e-81 308.5 626 71.4
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 2.2e-81 307.8 267 56.9
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.9e-81 307.4 400 73.8
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 4.9e-81 306.6 271 56.1
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 2.0e-79 301.2 619 70.8
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 2.0e-79 301.2 265 56.2
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 2.0e-79 301.2 614 72.3
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 6.0e-79 299.7 350 48.0
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.0e-78 298.9 621 69.7
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 5.0e-78 296.6 575 72.3
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 8.6e-78 295.8 637 65.1
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.1e-77 295.4 271 55.0
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 1.9e-77 294.7 616 70.9
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 2.5e-77 294.3 616 66.7
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 4.3e-77 293.5 620 70.5
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 7.3e-77 292.7 273 55.3
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.2e-76 292.0 579 72.2
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.6e-76 291.6 624 69.9
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 2.8e-76 290.8 623 69.7
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 2.3e-75 287.7 620 69.5
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 8.9e-75 285.8 598 70.6
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.6e-74 284.3 275 52.7
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 5.8e-74 283.1 621 68.8
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 9.8e-74 282.3 638 65.2
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 8.3e-73 279.3 271 52.8
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.1e-72 278.9 614 64.7
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.1e-72 278.9 262 54.2
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 1.4e-72 278.5 620 67.4
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 2.4e-72 277.7 614 64.7
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 2.4e-72 277.7 268 51.1
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 3.2e-72 277.3 266 51.5
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 4.1e-72 276.9 614 64.2
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 9.2e-72 275.8 614 63.7
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.2e-71 275.4 265 52.8
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 1.6e-71 275.0 624 69.1
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 4.6e-71 273.5 614 64.0
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 6.0e-71 273.1 619 63.2
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.3e-70 271.2 286 47.9
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 3.0e-70 270.8 620 63.4
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 3.9e-70 270.4 270 52.2
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 3.9e-70 270.4 617 69.4
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.2e-68 265.4 272 50.7
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.6e-68 265.0 274 51.1
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 2.8e-68 264.2 271 50.9
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 6.2e-68 263.1 278 50.4
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 8.1e-68 262.7 326 44.5
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 4.1e-64 250.4 504 79.4
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 1.7e-62 245.0 636 66.4
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 1.4e-48 198.7 203 46.3
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 1.2e-47 195.7 142 63.4
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 4.3e-45 187.2 158 54.4
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 3.2e-40 171.0 547 65.4
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.3e-38 165.6 99 78.8
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 5.8e-34 150.2 132 56.1
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.2e-32 144.4 178 50.0
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 6.7e-30 136.7 238 31.9
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 1.0e-25 122.9 183 32.8
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 1.1e-19 102.8 245 27.8
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 7.2e-16 90.1 81 58.0
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 2.1e-15 88.6 79 57.0
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 5.1e-14 84.0 82 54.9
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.3e-12 79.3 79 53.2
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 8.2e-12 76.6 78 52.6
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 5.0e-09 67.4 67 55.2
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 5.5e-08 63.9 64 50.0
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 1.0e-06 59.7 137 29.2
PGR044G2670 Punica granatum HOM05D000001 ORTHO05D009862 8.8e-06 56.6 121 31.4


User provided reference genes

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