Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 0.0e+00 1229.5 616 100.0
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 0.0e+00 1156.4 619 95.0
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 4.3e-275 951.0 611 78.2
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 3.8e-271 937.9 611 76.9
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 9.7e-267 923.3 616 77.1
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 4.5e-264 914.4 631 75.3
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.6e-261 906.0 612 74.2
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 3.6e-261 904.8 617 74.9
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 6.5e-247 857.4 616 72.6
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.2e-243 846.7 623 68.9
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 2.9e-239 832.0 618 68.4
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 4.3e-238 828.2 631 66.9
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.6e-237 826.2 631 66.7
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.2e-236 821.2 616 66.7
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.3e-234 816.6 615 66.7
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.4e-233 813.1 618 66.3
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.4e-233 813.1 625 67.2
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 3.2e-233 812.0 618 66.3
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 3.2e-233 812.0 509 80.0
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.6e-232 809.7 621 67.1
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 4.6e-232 808.1 630 65.2
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.7e-231 806.2 625 67.2
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 6.6e-231 804.3 622 66.6
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.1e-230 803.5 625 66.6
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 7.3e-230 800.8 621 65.7
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.0e-228 797.0 615 64.9
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.4e-228 796.6 619 65.4
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 1.8e-228 796.2 621 65.9
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.1e-228 795.4 621 65.2
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 3.1e-228 795.4 615 65.5
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 4.0e-228 795.0 644 65.4
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.8e-228 794.3 622 66.4
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 2.6e-227 792.3 621 65.7
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 2.6e-227 792.3 618 65.4
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 4.9e-226 788.1 623 63.9
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 6.4e-226 787.7 623 64.4
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.2e-225 785.4 627 64.1
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 2.0e-224 782.7 682 61.4
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-223 779.6 620 64.8
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.7e-223 779.6 622 64.5
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 3.0e-223 778.9 623 64.4
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 5.0e-223 778.1 635 63.8
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 7.3e-222 774.2 619 64.6
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 7.3e-222 774.2 618 64.1
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.6e-221 773.1 598 64.5
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 3.6e-221 771.9 619 64.9
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 1.4e-220 770.0 617 64.5
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 2.3e-220 769.2 625 63.7
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 8.9e-220 767.3 619 64.6
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.3e-218 763.5 628 62.9
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.3e-218 763.5 625 64.0
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 3.7e-218 761.9 627 62.5
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 3.2e-217 758.8 628 62.6
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.6e-216 756.5 574 67.2
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 2.1e-216 756.1 627 62.8
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.1e-216 756.1 611 62.7
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 2.7e-216 755.7 620 62.6
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 8.6e-215 750.7 614 63.2
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.5e-214 750.0 618 63.3
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.9e-214 749.6 619 62.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.2e-213 746.9 621 62.8
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 3.6e-213 745.3 627 62.5
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.8e-211 738.0 628 61.3
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 3.7e-210 735.3 574 65.7
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.4e-209 733.4 627 60.9
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 2.4e-209 732.6 600 63.0
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 3.2e-209 732.3 619 62.2
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 3.2e-209 732.3 620 61.0
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.2e-208 730.3 620 62.1
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.6e-208 729.9 628 61.0
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 6.0e-208 728.0 636 60.5
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 6.0e-208 728.0 621 59.9
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 6.0e-208 728.0 618 61.2
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.0e-207 727.2 637 59.0
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 5.6e-206 721.5 621 60.1
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 5.6e-206 721.5 601 61.6
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.4e-204 716.8 618 59.9
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.8e-204 716.5 620 60.3
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 2.4e-204 716.1 620 60.3
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 5.2e-204 714.9 619 60.4
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 5.2e-204 714.9 621 59.6
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 3.8e-202 708.8 625 58.4
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.2e-200 703.7 625 59.4
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 2.1e-200 703.0 625 59.8
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 4.6e-200 701.8 643 56.1
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-199 700.3 668 55.1
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.1e-198 697.2 616 59.4
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.3e-198 695.7 616 59.4
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 9.6e-198 694.1 601 60.6
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.0e-196 688.7 635 58.4
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 9.0e-196 687.6 654 56.3
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 3.4e-195 685.6 620 57.9
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.7e-194 683.3 642 56.9
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 1.7e-194 683.3 733 52.4
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.1e-192 676.4 630 55.7
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 3.0e-191 672.5 621 58.5
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 3.7e-181 639.0 734 49.6
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 6.0e-176 621.7 627 52.3
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 5.1e-175 618.6 643 52.9
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.5e-174 616.3 604 55.0
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 2.8e-173 612.8 622 53.2
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.8e-172 610.1 586 54.3
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.5e-171 607.1 586 54.1
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.4e-169 600.5 586 53.2
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.7e-165 585.9 647 53.5
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 2.6e-147 526.6 518 54.4
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.6e-131 474.2 415 58.3
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.0e-124 448.7 411 57.4
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.7e-118 429.1 409 56.2
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 5.7e-118 429.1 320 64.1
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.9e-117 426.8 334 61.1
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.9e-114 416.4 399 55.9
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.2e-111 406.0 409 53.8
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.4e-110 403.3 410 53.7
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.7e-109 401.0 405 52.3
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.7e-109 399.8 411 53.0
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.9e-109 399.4 448 49.3
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.3e-106 390.6 451 48.8
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.1e-104 384.0 413 51.6
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.3e-95 354.0 401 49.6
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.4e-93 345.9 412 47.6
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 2.0e-86 324.3 560 33.6
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 6.4e-85 319.3 204 76.0
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 2.6e-78 297.4 560 31.8
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 5.6e-73 279.6 258 56.2
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.8e-72 277.3 508 36.6
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.4e-71 275.0 527 32.6
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.9e-68 264.6 500 32.0
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 4.9e-61 240.0 167 71.3
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 3.7e-56 223.8 208 61.5
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.4e-55 221.1 237 50.6
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.7e-53 214.9 518 27.6
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.9e-53 214.2 237 49.8
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 4.6e-51 206.8 163 60.7
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 3.3e-41 174.1 108 76.9
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.8e-39 168.3 135 60.7
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 5.0e-37 160.2 132 61.4
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.5e-29 133.3 303 35.3
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.9e-28 131.7 95 71.6
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 7.2e-28 129.8 104 64.4
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.4e-26 125.6 163 49.7
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.5e-25 122.1 94 62.8
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 4.1e-23 114.0 100 54.0
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.3e-23 113.6 74 74.3
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 7.2e-20 103.2 113 47.8
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 2.1e-19 101.7 86 57.0
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 1.8e-18 98.6 75 61.3
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 2.8e-16 91.3 70 62.9
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 2.8e-16 91.3 70 62.9
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 3.8e-13 80.9 69 59.4
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.3e-12 77.8 45 68.9
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.3e-12 77.8 45 68.9
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 5.5e-12 77.0 48 68.8
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 2.8e-11 74.7 478 20.5
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 4.4e-09 67.4 496 20.2
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.4e-09 67.4 54 57.4
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 2.2e-08 65.1 471 20.8
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 6.3e-08 63.5 451 20.8
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 8.3e-08 63.2 444 20.5
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 4.1e-07 60.8 95 38.9
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 7.0e-07 60.1 481 19.8
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 7.0e-07 60.1 73 41.1
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 4.5e-06 57.4 73 39.7
SEGI_18082 Sequoiadendron giganteum HOM05D005706 ORTHO05D007474 4.5e-06 57.4 213 24.4
SEGI_29165 Sequoiadendron giganteum HOM05D005706 ORTHO05D007474 4.5e-06 57.4 213 24.4
ClCG05G023710 Citrullus lanatus HOM05D005706 ORTHO05D007474 5.9e-06 57.0 93 35.5
arahy.Tifrunner.gnm1.ann1.4TV6QC Arachis hypogaea HOM05D001779 ORTHO05D001753 7.8e-06 56.6 114 28.1
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 7.8e-06 56.6 53 52.8


User provided reference genes

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