Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 2.7e-280 968.0 482 100.0
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 6.3e-237 823.9 482 85.1
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 2.9e-226 788.5 485 82.3
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 5.2e-215 751.1 472 80.3
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 5.9e-211 737.6 468 79.1
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 7.2e-209 730.7 472 79.0
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 8.0e-208 727.2 435 83.0
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 1.1e-204 716.8 466 76.4
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 7.7e-203 710.7 466 75.5
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 8.1e-176 620.9 459 66.2
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 1.5e-174 616.7 438 68.0
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 2.6e-174 615.9 432 67.6
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 4.4e-174 615.1 464 65.3
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 4.9e-173 611.7 441 66.2
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 6.4e-173 611.3 434 67.3
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 3.2e-172 609.0 453 65.1
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 1.0e-170 604.0 446 64.3
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 1.0e-170 604.0 436 66.5
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 2.3e-170 602.8 442 67.9
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.9e-170 602.1 445 64.7
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 3.9e-170 602.1 445 64.9
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 1.1e-169 600.5 446 66.1
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 2.5e-169 599.4 433 66.5
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 7.3e-169 597.8 436 65.6
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 3.6e-168 595.5 431 65.4
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 4.7e-168 595.1 440 65.7
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 6.2e-168 594.7 441 65.1
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.4e-167 593.6 441 64.9
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 1.4e-167 593.6 431 67.3
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 8.9e-167 590.9 441 66.9
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 2.9e-165 585.9 454 63.9
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.8e-165 585.5 431 66.4
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 1.6e-163 580.1 440 63.4
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.1e-163 579.7 434 65.4
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 2.7e-163 579.3 398 69.1
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.5e-163 578.9 450 63.6
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 6.6e-162 574.7 441 64.4
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 6.9e-159 564.7 427 62.8
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 1.5e-158 563.5 472 60.2
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 4.4e-158 562.0 432 62.5
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 5.4e-156 555.1 441 61.5
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 1.6e-155 553.5 441 61.0
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 1.0e-154 550.8 449 61.2
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 1.3e-154 550.4 441 61.2
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 8.7e-154 547.7 344 79.1
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 2.5e-153 546.2 431 63.1
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 4.8e-152 542.0 434 62.4
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 6.2e-152 541.6 440 62.0
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 8.1e-152 541.2 443 60.7
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.8e-151 540.0 444 61.3
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 4.0e-151 538.9 440 61.4
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 4.0e-151 538.9 433 62.1
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 4.0e-151 538.9 439 61.0
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 5.3e-151 538.5 411 61.8
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 9.0e-151 537.7 433 61.9
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 4.5e-150 535.4 445 61.1
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 4.5e-150 535.4 449 59.0
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 5.8e-150 535.0 451 59.4
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 1.3e-149 533.9 438 61.2
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.2e-149 533.1 461 59.0
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 2.2e-149 533.1 418 62.7
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 2.2e-149 533.1 472 57.4
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 3.8e-149 532.3 445 59.6
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 6.4e-149 531.6 445 59.8
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 1.1e-148 530.8 445 60.9
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 7.1e-148 528.1 467 57.0
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.2e-147 527.3 447 61.1
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 1.2e-147 527.3 469 57.1
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.6e-147 526.9 462 57.6
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 2.7e-147 526.2 444 57.7
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 4.6e-147 525.4 447 57.7
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 3.7e-144 515.8 430 60.2
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 1.1e-143 514.2 466 58.4
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 6.9e-143 511.5 458 57.6
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 1.3e-141 507.3 399 61.9
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 1.1e-137 494.2 435 57.7
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.3e-137 492.7 361 64.8
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 8.2e-136 488.0 505 51.1
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 7.6e-134 481.5 419 56.8
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 4.9e-133 478.8 436 55.3
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 6.5e-133 478.4 432 56.0
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 6.1e-131 471.9 432 55.3
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 7.9e-131 471.5 450 54.9
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 5.3e-127 458.8 431 53.4
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 8.5e-125 451.4 448 54.7
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 3.9e-122 442.6 714 37.7
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 9.7e-121 438.0 304 67.1
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 2.3e-114 416.8 318 64.8
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.6e-113 413.3 440 49.3
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 4.4e-113 412.5 329 61.1
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 3.0e-106 389.8 377 54.9
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 7.4e-105 385.2 365 52.1
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 2.8e-104 383.3 312 60.3
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 1.8e-103 380.6 332 55.7
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 2.4e-103 380.2 315 61.0
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.5e-100 370.9 368 49.5
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 4.7e-99 365.9 317 58.7
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 2.3e-98 363.6 429 46.4
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 7.5e-97 358.6 397 47.4
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 7.0e-95 352.1 318 56.3
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 7.0e-95 352.1 223 79.4
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.6e-91 340.9 400 46.5
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.3e-85 320.5 240 64.2
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 1.0e-82 311.6 174 82.8
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 6.6e-77 292.4 351 47.0
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.0e-74 285.0 243 59.3
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.1e-71 275.0 216 64.8
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 7.0e-71 272.3 435 38.2
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.3e-61 241.5 216 56.9
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 1.9e-55 221.1 211 55.9
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 2.8e-51 207.2 140 75.7
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 6.4e-48 196.1 141 74.5
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 1.9e-44 184.5 132 73.5
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.1e-43 181.0 174 52.9
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 3.6e-43 180.3 135 61.5
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 2.6e-41 174.1 123 66.7
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 7.6e-41 172.6 195 44.6
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.1e-26 125.6 112 57.1
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 6.0e-22 109.8 140 40.0
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 5.7e-20 103.2 415 25.8
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 4.8e-19 100.1 385 25.2
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 6.2e-19 99.8 76 65.8
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 3.4e-17 94.0 135 44.4
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 1.5e-12 78.6 84 53.6
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 2.0e-09 68.2 395 22.0
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 3.6e-06 57.4 37 75.7


User provided reference genes

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