Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G086400 Glycine max HOM05D007672 ORTHO05D009617 4.4e-68 261.2 132 100.0
Glyma.07G172500 Glycine max HOM05D007672 ORTHO05D009617 4.5e-60 234.6 132 92.4
Phvul.003G016200 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 1.6e-41 172.9 132 71.2
Medtr1g032750 Medicago truncatula HOM05D007672 ORTHO05D009617 6.0e-41 171.0 131 67.2
Lj2g0012031 Lotus japonicus HOM05D007672 ORTHO05D009617 7.9e-41 170.6 131 71.0
VMungo1215G2599 Vigna mungo HOM05D007672 ORTHO05D009617 3.3e-39 165.2 110 81.8
TPR.G36851 Trifolium pratense HOM05D007672 ORTHO05D009617 9.0e-37 157.1 134 65.7
Psat6g051280 Pisum sativum HOM05D007672 ORTHO05D009617 9.1e-29 130.6 105 68.6
Lj2g0015752 Lotus japonicus HOM05D007672 ORTHO05D009617 1.3e-22 110.2 85 64.7
Actinidia36615 Actinidia chinensis HOM05D007672 ORTHO05D009617 3.7e-22 108.6 124 50.0
Ciclev10017185m.g Citrus clementina HOM05D007672 ORTHO05D009617 6.3e-22 107.8 105 55.2
Prupe.1G335000 Prunus persica HOM05D007672 ORTHO05D009617 2.6e-20 102.4 113 51.3
FAN08G2449 Fragaria x ananassa HOM05D007672 ORTHO05D009617 7.7e-20 100.9 103 52.4
FAN04G1237 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.3e-19 100.1 103 52.4
Prupe.5G236700 Prunus persica HOM05D007672 ORTHO05D009617 2.9e-19 99.0 103 50.5
FvH4_5g17670 Fragaria vesca HOM05D007672 ORTHO05D009617 6.5e-19 97.8 104 51.0
FAN18G0484 Fragaria x ananassa HOM05D007672 ORTHO05D009617 6.5e-19 97.8 104 51.0
QL03p037604 Quercus lobata HOM05D007672 ORTHO05D009617 1.1e-18 97.1 111 45.0
Hma1.2p1_0940F.1_g239540 Hydrangea macrophylla HOM05D007672 ORTHO05D009617 2.5e-18 95.9 114 46.5
RcHm_v2.0_Chr4g0442631 Rosa chinensis HOM05D007672 ORTHO05D009617 2.5e-18 95.9 120 44.2
Medtr6g071190 Medicago truncatula HOM05D007672 ORTHO05D009617 3.2e-18 95.5 115 47.0
Dinv32113 Davidia involucrata HOM05D007672 ORTHO05D009617 4.2e-18 95.1 108 46.3
Psat1g029600 Pisum sativum HOM05D007672 ORTHO05D009617 7.2e-18 94.4 113 46.9
Lj2g0010633 Lotus japonicus HOM05D007672 ORTHO05D009617 1.6e-17 93.2 104 47.1
Manes.06G003100 Manihot esculenta HOM05D007672 ORTHO05D009617 1.6e-17 93.2 97 49.5
Potri.012G043400 Populus trichocarpa HOM05D007672 ORTHO05D009617 1.6e-17 93.2 102 52.9
Duzib068G1319 Durio zibethinus HOM05D007672 ORTHO05D009617 2.7e-17 92.4 120 44.2
RcHm_v2.0_Chr7g0177981 Rosa chinensis HOM05D007672 ORTHO05D009617 2.7e-17 92.4 116 46.6
CiPaw.15G147200 Carya illinoinensis HOM05D007672 ORTHO05D009617 4.7e-17 91.7 114 43.9
FvH4_4g33370 Fragaria vesca HOM05D007672 ORTHO05D009617 8.0e-17 90.9 121 43.8
FAN12G4179 Fragaria x ananassa HOM05D007672 ORTHO05D009617 8.0e-17 90.9 121 43.8
CANSAT78G0487 Cannabis sativa HOM05D007672 ORTHO05D009617 2.3e-16 89.4 99 47.5
Carub.0001s1456 Capsella rubella HOM05D007672 ORTHO05D009617 1.1e-15 87.0 108 42.6
Haze_18912 Corylus avellana HOM05D007672 ORTHO05D009617 1.5e-15 86.7 117 45.3
Lalb_Chr14g0370701 Lupinus albus HOM05D007672 ORTHO05D009617 1.5e-15 86.7 103 42.7
MD14G1239200 Malus domestica HOM05D007672 ORTHO05D009617 1.5e-15 86.7 104 48.1
Manes.14G157000 Manihot esculenta HOM05D007672 ORTHO05D009617 1.5e-15 86.7 100 46.0
CARHR015300 Cardamine hirsuta HOM05D007672 ORTHO05D009617 2.0e-15 86.3 110 43.6
FAN07G2452 Fragaria x ananassa HOM05D007672 ORTHO05D009617 2.0e-15 86.3 121 42.1
Gorai.008G291600 Gossypium raimondii HOM05D007672 ORTHO05D009617 2.0e-15 86.3 105 46.7
Thecc.03G062100 Theobroma cacao HOM05D007672 ORTHO05D009617 2.0e-15 86.3 108 47.2
Manes.15G136200 Manihot esculenta HOM05D007672 ORTHO05D009617 2.6e-15 85.9 100 44.0
arahy.Tifrunner.gnm1.ann1.S28ZE3 Arachis hypogaea HOM05D007672 ORTHO05D009617 3.3e-15 85.5 103 44.7
Cpa.g.sc3.361 Carica papaya HOM05D000154 ORTHO05D000092 3.3e-15 85.5 105 46.7
Gohir.A12G270800 Gossypium hirsutum HOM05D007672 ORTHO05D009617 3.3e-15 85.5 105 46.7
AL1G26790 Arabidopsis lyrata HOM05D007672 ORTHO05D009617 4.4e-15 85.1 110 46.4
A06p10820 Brassica napus HOM05D007672 ORTHO05D009617 4.4e-15 85.1 105 43.8
THA.LOC104823640 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 5.7e-15 84.7 106 43.4
Lalb_Chr22g0353431 Lupinus albus HOM05D007672 ORTHO05D009617 9.7e-15 84.0 101 43.6
BcaC05g25394 Brassica carinata HOM05D007672 ORTHO05D009617 1.3e-14 83.6 114 42.1
BolC5t30015H Brassica oleracea HOM05D007672 ORTHO05D009617 1.3e-14 83.6 114 42.1
Gohir.D12G271200 Gossypium hirsutum HOM05D007672 ORTHO05D009617 1.3e-14 83.6 105 44.8
Sp1g13200 Schrenkiella parvula HOM05D007672 ORTHO05D009617 1.3e-14 83.6 111 39.6
arahy.Tifrunner.gnm1.ann1.00W5AZ Arachis hypogaea HOM05D007672 ORTHO05D009617 1.7e-14 83.2 103 43.7
BraA06t24260Z Brassica rapa HOM05D007672 ORTHO05D009617 1.7e-14 83.2 105 42.9
MD06G1232400 Malus domestica HOM05D007672 ORTHO05D009617 1.7e-14 83.2 104 45.2
VMungo0464G2034 Vigna mungo HOM05D000162 ORTHO05D009617 2.8e-14 82.4 106 43.4
CDE05G0014 Ceratophyllum demersum HOM05D007672 ORTHO05D009617 3.7e-14 82.0 107 43.9
Thhalv10009881m.g Eutrema salsugineum HOM05D007672 ORTHO05D009617 3.7e-14 82.0 107 43.0
Oeu023512.1 Olea europaea HOM05D007672 ORTHO05D009617 3.7e-14 82.0 125 40.0
Aqoxy3G04074 Aquilegia oxysepala HOM05D007672 ORTHO05D009617 4.8e-14 81.6 105 41.0
Peaxi162Scf01064g00027 Petunia axillaris HOM05D007672 ORTHO05D009617 4.8e-14 81.6 130 39.2
C05p12710 Brassica napus HOM05D007672 ORTHO05D009617 6.3e-14 81.3 114 41.2
PGR044G0098 Punica granatum HOM05D007672 ORTHO05D009617 8.2e-14 80.9 107 40.2
Aa31LG1G330 Aethionema arabicum HOM05D007672 ORTHO05D009617 1.1e-13 80.5 105 39.0
Glyma.07G104800 Glycine max HOM05D007672 ORTHO05D009617 1.1e-13 80.5 106 43.4
Glyma.09G172851 Glycine max HOM05D007672 ORTHO05D009617 1.1e-13 80.5 106 43.4
Dinv06126 Davidia involucrata HOM05D008473 ORTHO05D009617 1.4e-13 80.1 102 44.1
Phvul.004G148100 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 1.4e-13 80.1 101 42.6
CAN.G65.98 Capsicum annuum HOM05D007672 ORTHO05D009617 5.3e-13 78.2 126 38.9
Nitab4.5_0000033g0200 Nicotiana tabacum HOM05D007672 ORTHO05D009617 5.9e-12 74.7 132 39.4
SalBow1G8131 Salvia bowleyana HOM05D007672 ORTHO05D009617 5.9e-12 74.7 104 42.3
FAN17G1984 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.3e-11 73.6 107 42.1
Nitab4.5_0004855g0020 Nicotiana tabacum HOM05D007672 ORTHO05D009617 1.3e-11 73.6 125 37.6
SGA_v2.0_scaffold74G24688 Striga asiatica HOM05D007672 ORTHO05D009617 1.3e-11 73.6 118 41.5
THA.LOC104805091 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 1.3e-11 73.6 105 41.0
Migut.D01220 Erythranthe guttata HOM05D007672 ORTHO05D009617 3.8e-11 72.0 108 39.8
Sabra12G0030500 Salix brachista HOM05D000154 ORTHO05D009617 3.8e-11 72.0 149 36.9
Solyc06g072480.1 Solanum lycopersicum HOM05D007672 ORTHO05D009617 8.5e-11 70.9 121 38.8
TWI15G1176 Tripterygium wilfordii HOM05D007672 ORTHO05D009617 1.5e-10 70.1 136 33.8
DCAR_023572 Daucus carota HOM05D007672 ORTHO05D009617 7.2e-10 67.8 126 35.7
SalBow7G4052 Salvia bowleyana HOM05D000779 ORTHO05D000246 4.0e-08 62.0 102 36.3
Carub.0006s2670 Capsella rubella HOM05D000779 ORTHO05D000246 1.2e-07 60.5 103 36.9
Thhalv10008711m.g Eutrema salsugineum HOM05D000779 ORTHO05D000246 1.5e-07 60.1 117 35.9
Gohir.A12G275600 Gossypium hirsutum HOM05D000779 ORTHO05D000246 1.5e-07 60.1 98 36.7
Sopen06g028850 Solanum pennellii HOM05D007672 ORTHO05D009617 1.5e-07 60.1 58 53.4
Aqoxy6G02971 Aquilegia oxysepala HOM05D000779 ORTHO05D000246 2.0e-07 59.7 112 33.9
SEGI_36691 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 2.0e-07 59.7 108 35.2
AT4G08150 Arabidopsis thaliana HOM05D000779 ORTHO05D000246 2.6e-07 59.3 103 35.9
BcaC07g41540 Brassica carinata HOM05D007672 ORTHO05D009617 2.6e-07 59.3 114 33.3
C08p45430 Brassica napus HOM05D007672 ORTHO05D009617 2.6e-07 59.3 114 33.3
BolC8t52097H Brassica oleracea HOM05D007672 ORTHO05D009617 2.6e-07 59.3 114 33.3
GSVIVG01008479001 Vitis vinifera HOM05D007672 ORTHO05D009617 2.6e-07 59.3 43 65.1
Carub.0001s2296 Capsella rubella HOM05D000779 ORTHO05D000246 3.3e-07 58.9 117 35.9
Aa31LG7G7410 Aethionema arabicum HOM05D000779 ORTHO05D000246 4.4e-07 58.5 117 36.8
MD17G1102600 Malus domestica HOM05D000779 ORTHO05D000246 4.4e-07 58.5 116 32.8
Oeu000009.1 Olea europaea HOM05D000779 ORTHO05D000246 4.4e-07 58.5 109 36.7
Zm00001eb052120 Zea mays HOM05D000779 ORTHO05D000246 4.4e-07 58.5 98 33.7
AL6G41780 Arabidopsis lyrata HOM05D000779 ORTHO05D000246 5.7e-07 58.2 103 35.9
AT1G23380 Arabidopsis thaliana HOM05D000779 ORTHO05D000246 5.7e-07 58.2 117 35.9
CARHR023820 Cardamine hirsuta HOM05D000779 ORTHO05D000246 5.7e-07 58.2 117 35.9
Peaxi162Scf00089g01735 Petunia axillaris HOM05D000779 ORTHO05D000246 5.7e-07 58.2 119 30.3
BcaC03g15198 Brassica carinata HOM05D000779 ORTHO05D000246 7.5e-07 57.8 105 37.1
C02p27790 Brassica napus HOM05D000779 ORTHO05D000246 7.5e-07 57.8 103 36.9
BolC2t08824H Brassica oleracea HOM05D000779 ORTHO05D000246 7.5e-07 57.8 103 36.9
CARHR063720 Cardamine hirsuta HOM05D000779 ORTHO05D000246 7.5e-07 57.8 111 34.2
CARHR259260 Cardamine hirsuta HOM05D000779 ORTHO05D000246 7.5e-07 57.8 115 33.0
Cfa006705 Carpinus fangiana HOM05D000779 ORTHO05D000246 7.5e-07 57.8 103 35.0
Sp5g25630 Schrenkiella parvula HOM05D000779 ORTHO05D000246 7.5e-07 57.8 105 36.2
Haze_07532 Corylus avellana HOM05D000779 ORTHO05D000246 9.7e-07 57.4 98 36.7
Gohir.D12G276300 Gossypium hirsutum HOM05D000779 ORTHO05D000246 9.7e-07 57.4 98 37.8
Medtr1g084060 Medicago truncatula HOM05D000779 ORTHO05D000246 9.7e-07 57.4 108 31.5
Peaxi162Scf00673g00046 Petunia axillaris HOM05D000779 ORTHO05D000246 9.7e-07 57.4 104 32.7
THA.LOC104822155 Tarenaya hassleriana HOM05D000779 ORTHO05D000246 9.7e-07 57.4 103 38.8
CAN.G1076.7 Capsicum annuum HOM05D000779 ORTHO05D000246 1.3e-06 57.0 101 34.7
CDE04G0701 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 1.3e-06 57.0 102 36.3
Thhalv10028724m.g Eutrema salsugineum HOM05D000779 ORTHO05D000246 1.3e-06 57.0 117 33.3
Aa31LG4G10450 Aethionema arabicum HOM05D000779 ORTHO05D000246 1.7e-06 56.6 105 37.1
CSS0019602 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 1.7e-06 56.6 103 34.0
Cc02_g35050 Coffea canephora HOM05D000779 ORTHO05D000246 1.7e-06 56.6 121 33.9
Haze_04060 Corylus avellana HOM05D000779 ORTHO05D000246 1.7e-06 56.6 103 34.0
Duzib068G0623 Durio zibethinus HOM05D000779 ORTHO05D000246 1.7e-06 56.6 131 35.9
Nn4g24448 Nelumbo nucifera HOM05D007672 ORTHO05D009617 1.7e-06 56.6 97 40.2
BraA02t06715Z Brassica rapa HOM05D000779 ORTHO05D000246 2.2e-06 56.2 103 35.9
CSS0036489 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 2.2e-06 56.2 108 35.2
COL.COLO4_30088 Corchorus olitorius HOM05D000779 ORTHO05D000246 2.2e-06 56.2 121 32.2
Gorai.008G296800 Gossypium raimondii HOM05D000779 ORTHO05D000246 2.2e-06 56.2 98 37.8
MD10G1326500 Malus domestica HOM05D000779 ORTHO05D000246 2.2e-06 56.2 102 34.3
MD13G1018900 Malus domestica HOM05D007672 ORTHO05D009617 2.2e-06 56.2 82 43.9
QL10p009568 Quercus lobata HOM05D000779 ORTHO05D000246 2.2e-06 56.2 107 33.6
TPR.G2622 Trifolium pratense HOM05D000779 ORTHO05D000246 2.2e-06 56.2 101 31.7
Actinidia10240 Actinidia chinensis HOM05D000779 ORTHO05D000246 2.8e-06 55.8 115 30.4
AL1G37170 Arabidopsis lyrata HOM05D000779 ORTHO05D000246 2.8e-06 55.8 117 35.0
BcaB07g32333 Brassica carinata HOM05D000779 ORTHO05D000246 2.8e-06 55.8 118 37.3
Ca_10173_v3 Cicer arietinum L. HOM05D000779 ORTHO05D000246 2.8e-06 55.8 106 30.2
Thhalv10019184m.g Eutrema salsugineum HOM05D000779 ORTHO05D000246 2.8e-06 55.8 108 34.3
SEGI_39888 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 2.8e-06 55.8 110 35.5
SGA_v2.0_scaffold53G19283 Striga asiatica HOM05D000779 ORTHO05D000246 2.8e-06 55.8 105 34.3
CiPaw.11G023900 Carya illinoinensis HOM05D000779 ORTHO05D000246 3.7e-06 55.5 98 37.8
CDE06G2668 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 3.7e-06 55.5 102 35.3
Sp6g10130 Schrenkiella parvula HOM05D000779 ORTHO05D000246 3.7e-06 55.5 119 31.1
Solyc01g100510.4 Solanum lycopersicum HOM05D000779 ORTHO05D000246 3.7e-06 55.5 102 33.3
Sopen01g044020 Solanum pennellii HOM05D000779 ORTHO05D000246 3.7e-06 55.5 102 33.3
AT1G70510 Arabidopsis thaliana HOM05D000779 ORTHO05D000246 4.8e-06 55.1 105 36.2
Nitab4.5_0000368g0070 Nicotiana tabacum HOM05D000779 ORTHO05D000246 4.8e-06 55.1 106 31.1
Sabra13G0007200 Salix brachista HOM05D000779 ORTHO05D000246 4.8e-06 55.1 113 30.1
SEGI_39954 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 4.8e-06 55.1 121 33.9
Actinidia01680 Actinidia chinensis HOM05D000779 ORTHO05D000246 6.3e-06 54.7 102 34.3
Aa31sc59G10 Aethionema arabicum HOM05D000779 ORTHO05D000246 6.3e-06 54.7 102 35.3
ATR0796G220 Amborella trichopoda HOM05D000779 ORTHO05D000246 6.3e-06 54.7 103 32.0
MSTRG.16410 Avicennia marina HOM05D000779 ORTHO05D000246 6.3e-06 54.7 102 32.4
A02p16590 Brassica napus HOM05D000779 ORTHO05D000246 6.3e-06 54.7 103 35.0
Lalb_Chr05g0216661 Lupinus albus HOM05D000779 ORTHO05D000246 6.3e-06 54.7 105 34.3
MD05G1352500 Malus domestica HOM05D000779 ORTHO05D000246 6.3e-06 54.7 103 33.0
Manes.13G027401 Manihot esculenta HOM05D000779 ORTHO05D000246 6.3e-06 54.7 111 33.3
Thecc.03G015400 Theobroma cacao HOM05D000779 ORTHO05D000246 6.3e-06 54.7 131 35.1
BcaB05g24583 Brassica carinata HOM05D000779 ORTHO05D000246 8.2e-06 54.3 107 34.6
Glyma.20G097500 Glycine max HOM05D000779 ORTHO05D000246 8.2e-06 54.3 109 31.2
Nitab4.5_0005883g0010 Nicotiana tabacum HOM05D000779 ORTHO05D000246 8.2e-06 54.3 106 31.1
PSO210G7828 Papaver somniferum HOM05D000779 ORTHO05D000246 8.2e-06 54.3 111 31.5
PGSC0003DMG400002769 Solanum tuberosum HOM05D000779 ORTHO05D000246 8.2e-06 54.3 118 29.7
THA.LOC104806966 Tarenaya hassleriana HOM05D000779 ORTHO05D000246 8.2e-06 54.3 111 30.6
VMungo0647G0834 Vigna mungo HOM05D000779 ORTHO05D000246 8.2e-06 54.3 97 38.1


User provided reference genes

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