Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 1.1e-72 276.6 138 100.0
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.2e-68 263.1 138 94.2
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.1e-64 250.0 138 89.1
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.2e-63 246.5 138 87.7
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 4.5e-63 244.6 137 88.3
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 3.8e-62 241.5 138 84.8
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 6.5e-62 240.7 137 86.1
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 1.4e-61 239.6 139 86.3
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.5e-61 238.8 136 86.0
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 9.4e-61 236.9 138 84.1
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 1.2e-60 236.5 139 84.9
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.2e-60 236.5 139 84.9
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 1.4e-59 233.0 132 87.9
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 2.3e-59 232.3 132 87.9
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 2.3e-59 232.3 140 81.4
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 7.4e-58 227.3 140 82.1
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 7.4e-58 227.3 140 82.1
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 9.7e-58 226.9 135 83.0
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.8e-56 222.6 138 79.0
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 3.1e-56 221.9 139 80.6
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 4.1e-56 221.5 136 80.9
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 7.0e-56 220.7 138 81.2
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 9.1e-56 220.3 138 77.5
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 9.1e-56 220.3 138 80.4
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 1.5e-55 219.5 140 81.4
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 1.5e-55 219.5 140 81.4
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 2.0e-55 219.2 138 79.7
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 2.0e-55 219.2 138 79.7
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 2.6e-55 218.8 138 77.5
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 2.6e-55 218.8 138 80.4
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 3.5e-55 218.4 139 77.7
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 5.9e-55 217.6 134 79.9
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 5.9e-55 217.6 140 78.6
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 5.9e-55 217.6 138 80.4
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 7.7e-55 217.2 134 81.3
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 1.3e-54 216.5 138 79.0
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.3e-54 216.5 136 77.9
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.3e-54 216.5 134 79.1
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 5.0e-54 214.5 139 76.3
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 5.0e-54 214.5 135 81.5
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 6.5e-54 214.2 132 78.8
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 8.5e-54 213.8 139 77.0
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 1.5e-53 213.0 136 77.2
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 1.5e-53 213.0 134 77.6
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.5e-53 213.0 134 77.6
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 3.2e-53 211.8 138 77.5
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 3.2e-53 211.8 138 78.3
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 4.2e-53 211.5 132 79.5
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 4.2e-53 211.5 135 78.5
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 5.5e-53 211.1 137 78.8
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 7.2e-53 210.7 135 80.7
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 7.2e-53 210.7 138 73.9
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 7.2e-53 210.7 138 76.1
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.2e-52 209.9 135 77.8
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 1.2e-52 209.9 135 77.8
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 1.2e-52 209.9 135 78.5
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 1.6e-52 209.5 138 77.5
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 1.6e-52 209.5 134 77.6
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 2.1e-52 209.1 134 76.9
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 2.1e-52 209.1 133 78.2
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 2.1e-52 209.1 134 76.9
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 2.7e-52 208.8 138 73.2
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 2.7e-52 208.8 119 86.6
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 6.1e-52 207.6 134 77.6
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 1.8e-51 206.1 138 71.7
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 1.8e-51 206.1 131 76.3
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 3.0e-51 205.3 138 73.2
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 3.9e-51 204.9 138 75.4
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 5.2e-51 204.5 136 75.0
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 6.7e-51 204.1 138 73.9
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 8.8e-51 203.8 139 73.4
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 1.5e-50 203.0 136 70.6
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 4.4e-50 201.4 145 75.2
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 4.4e-50 201.4 138 73.9
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 4.4e-50 201.4 138 72.5
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 3.7e-49 198.4 147 69.4
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 3.7e-49 198.4 147 69.4
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 3.7e-49 198.4 147 69.4
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 3.7e-49 198.4 147 69.4
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 4.8e-49 198.0 139 70.5
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.1e-48 196.8 135 72.6
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.8e-48 196.1 134 70.1
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 2.4e-48 195.7 138 71.7
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 2.4e-48 195.7 135 72.6
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 4.1e-48 194.9 138 71.0
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 4.1e-48 194.9 138 71.0
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 9.1e-48 193.7 137 72.3
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.2e-47 193.4 135 71.9
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 2.0e-47 192.6 134 67.9
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 2.6e-47 192.2 142 69.7
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 3.5e-47 191.8 139 66.9
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 3.5e-47 191.8 134 68.7
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 5.9e-47 191.0 135 71.1
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 1.3e-46 189.9 134 70.1
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 3.8e-46 188.3 139 68.3
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 3.8e-46 188.3 143 67.8
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 3.2e-45 185.3 139 66.9
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 6.1e-44 181.0 116 75.0
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 8.0e-44 180.6 115 75.7
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 8.0e-44 180.6 120 70.8
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 1.4e-43 179.9 116 75.0
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 1.4e-43 179.9 132 65.9
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 1.4e-43 179.9 132 65.9
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 4.0e-43 178.3 115 72.2
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 4.0e-43 178.3 115 72.2
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 4.0e-43 178.3 115 72.2
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 6.8e-43 177.6 115 73.0
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 1.2e-42 176.8 115 71.3
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 1.2e-42 176.8 115 71.3
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 1.5e-42 176.4 115 73.0
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 3.4e-42 175.3 109 74.3
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 7.5e-42 174.1 109 73.4
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 7.5e-42 174.1 114 79.8
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 9.8e-42 173.7 116 69.8
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 1.3e-41 173.3 127 67.7
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 1.3e-41 173.3 110 74.5
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 2.2e-41 172.6 108 73.1
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 3.7e-41 171.8 114 70.2
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 1.6e-39 166.4 95 77.9
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 2.0e-39 166.0 118 75.4
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 5.9e-39 164.5 134 64.9
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 1.5e-34 149.8 90 73.3
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 9.8e-34 147.1 139 53.2
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 2.4e-32 142.5 89 75.3
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 3.1e-32 142.1 138 55.8
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 1.1e-29 133.7 128 57.0
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 4.7e-28 128.3 115 58.3
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 5.2e-27 124.8 122 50.8
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 1.5e-26 123.2 136 52.9
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 1.3e-25 120.2 74 81.1
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 1.3e-25 120.2 121 53.7
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 7.0e-24 114.4 68 72.1
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.6e-23 113.2 60 81.7
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 5.9e-23 111.3 82 76.8
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 1.1e-21 107.1 75 76.0
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 6.1e-20 101.3 77 63.6
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.0e-19 100.5 93 61.3
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 6.8e-19 97.8 60 73.3
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 8.9e-19 97.4 120 43.3
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 8.9e-19 97.4 100 48.0
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 2.0e-18 96.3 70 64.3
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 1.0e-14 84.0 57 71.9
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 5.0e-14 81.6 56 67.9
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 3.3e-13 79.0 105 40.0
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.2e-12 77.0 77 51.9
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 1.4e-11 73.6 146 37.0
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.2e-10 70.5 79 53.2
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 4.9e-09 65.1 81 45.7


User provided reference genes

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