Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G061600 Glycine max HOM05D005776 ORTHO05D035967 1.3e-82 309.7 152 100.0
Phvul.003G249400 Phaseolus vulgaris HOM05D005776 ORTHO05D035967 4.1e-41 171.8 139 68.3
VMungo0251G3041 Vigna mungo HOM05D005776 ORTHO05D035967 3.5e-40 168.7 139 68.3
arahy.Tifrunner.gnm1.ann1.TE9NQ7 Arachis hypogaea HOM05D005776 ORTHO05D007333 2.0e-32 142.9 172 52.9
arahy.Tifrunner.gnm1.ann1.41BUH4 Arachis hypogaea HOM05D005776 ORTHO05D007333 9.4e-30 134.0 184 49.5
Glyma.01G182500 Glycine max HOM05D005776 ORTHO05D007333 2.3e-28 129.4 151 51.0
Lj2g0005971 Lotus japonicus HOM05D005776 ORTHO05D007333 1.2e-27 127.1 168 47.6
Lalb_Chr09g0333671 Lupinus albus HOM05D005776 ORTHO05D007333 1.2e-27 127.1 154 50.6
Prupe.7G145200 Prunus persica HOM05D005776 ORTHO05D007333 5.7e-27 124.8 162 45.1
Phvul.002G023500 Phaseolus vulgaris HOM05D005776 ORTHO05D007333 1.7e-26 123.2 156 49.4
VMungo1215G2372 Vigna mungo HOM05D005776 ORTHO05D007333 6.3e-26 121.3 157 51.0
CiPaw.01G029000 Carya illinoinensis HOM05D005776 ORTHO05D007333 1.1e-25 120.6 159 48.4
MD15G1273400 Malus domestica HOM05D005776 ORTHO05D007333 1.4e-25 120.2 156 47.4
HanXRQChr12g0378471 Helianthus annuus HOM05D005776 ORTHO05D007333 2.4e-25 119.4 156 50.6
Eucgr.H01941 Eucalyptus grandis HOM05D005776 ORTHO05D007333 3.1e-25 119.0 166 45.8
Potri.007G034400 Populus trichocarpa HOM05D005776 ORTHO05D007333 5.4e-25 118.2 166 46.4
Psat2g163800 Pisum sativum HOM05D005776 ORTHO05D007333 1.6e-24 116.7 164 47.0
Cfa004232 Carpinus fangiana HOM05D005776 ORTHO05D007333 2.0e-24 116.3 159 47.8
Haze_15167 Corylus avellana HOM05D005776 ORTHO05D007333 2.0e-24 116.3 159 48.4
GSVIVG01003777001 Vitis vinifera HOM05D005776 ORTHO05D007333 2.7e-24 115.9 156 48.7
Cfa017515 Carpinus fangiana HOM05D005776 ORTHO05D007333 3.5e-24 115.5 161 48.4
MD02G1158600 Malus domestica HOM05D005776 ORTHO05D007333 3.5e-24 115.5 162 45.7
Manes.12G094700 Manihot esculenta HOM05D005776 ORTHO05D007333 1.0e-23 114.0 164 46.3
RcHm_v2.0_Chr2g0103261 Rosa chinensis HOM05D005776 ORTHO05D007333 1.0e-23 114.0 167 43.7
Medtr5g018580 Medicago truncatula HOM05D005776 ORTHO05D007333 1.3e-23 113.6 165 43.0
Lsat_1_v5_gn_3_94020 Lactuca sativa HOM05D005776 ORTHO05D007333 1.7e-23 113.2 165 45.5
Sabra07G0030000 Salix brachista HOM05D005776 ORTHO05D007333 2.9e-23 112.5 166 45.8
FvH4_1g14520 Fragaria vesca HOM05D005776 ORTHO05D007333 6.5e-23 111.3 163 42.9
FAN19G1930 Fragaria x ananassa HOM05D005776 ORTHO05D007333 1.1e-22 110.5 163 42.9
TPR.G29855 Trifolium pratense HOM05D005776 ORTHO05D007333 1.1e-22 110.5 151 45.0
FAN23G2656 Fragaria x ananassa HOM05D005776 ORTHO05D007333 1.5e-22 110.2 164 42.7
FAN26G3400 Fragaria x ananassa HOM05D005776 ORTHO05D007333 1.9e-22 109.8 164 42.7
CANSAT25G0990 Cannabis sativa HOM05D005776 ORTHO05D007333 2.5e-22 109.4 163 46.6
ECA246G4011 Erigeron canadensis HOM05D005776 ORTHO05D007333 3.2e-22 109.0 169 45.0
ClCG01G016400 Citrullus lanatus HOM05D005776 ORTHO05D007333 4.2e-22 108.6 162 45.1
PGSC0003DMG400022206 Solanum tuberosum HOM05D005776 ORTHO05D007333 5.5e-22 108.2 116 52.6
BcaNung03515 Brassica carinata HOM05D005776 ORTHO05D007333 1.6e-21 106.7 116 50.0
Actinidia12087 Actinidia chinensis HOM05D005776 ORTHO05D007333 2.1e-21 106.3 128 49.2
TWI09G1011 Tripterygium wilfordii HOM05D005776 ORTHO05D007333 2.8e-21 105.9 153 43.1
CsaV3_6G042720 Cucumis sativus L. HOM05D005776 ORTHO05D007333 3.6e-21 105.5 156 45.5
Rhsim10G0126200 Rhododendron simsii HOM05D005776 ORTHO05D007333 3.6e-21 105.5 138 46.4
SGA_v2.0_scaffold10G05128 Striga asiatica HOM05D005776 ORTHO05D007333 3.6e-21 105.5 149 43.6
Ca_24808_v3 Cicer arietinum L. HOM05D005776 ORTHO05D007333 4.7e-21 105.1 170 42.9
Lj4A136T80 Lonicera japonica HOM05D005776 ORTHO05D007333 4.7e-21 105.1 151 45.7
MSTRG.3404 Avicennia marina HOM05D005776 ORTHO05D007333 6.1e-21 104.8 133 47.4
Sed0000268 Sechium edule HOM05D005776 ORTHO05D007333 6.1e-21 104.8 147 46.9
FAN28G0587 Fragaria x ananassa HOM05D005776 ORTHO05D007333 8.0e-21 104.4 164 42.7
Cpa.g.sc15.62 Carica papaya HOM05D005776 ORTHO05D007333 1.0e-20 104.0 139 46.0
AUR62022050 Chenopodium quinoa HOM05D005776 ORTHO05D007333 1.0e-20 104.0 163 44.8
Thhalv10026051m.g Eutrema salsugineum HOM05D005776 ORTHO05D007333 1.0e-20 104.0 159 43.4
Duzib251G0151 Durio zibethinus HOM05D005776 ORTHO05D007333 1.4e-20 103.6 164 42.1
Sopen07g033140 Solanum pennellii HOM05D005776 ORTHO05D007333 1.4e-20 103.6 116 50.9
COL.COLO4_07276 Corchorus olitorius HOM05D005776 ORTHO05D007333 2.3e-20 102.8 164 41.5
THA.LOC104804218 Tarenaya hassleriana HOM05D005776 ORTHO05D007333 2.3e-20 102.8 161 41.0
Nitab4.5_0002826g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 5.2e-20 101.7 114 50.9
Thecc.02G289200 Theobroma cacao HOM05D005776 ORTHO05D007333 5.2e-20 101.7 164 42.1
AUR62009176 Chenopodium quinoa HOM05D005776 ORTHO05D007333 6.8e-20 101.3 132 47.7
Solyc07g064940.3 Solanum lycopersicum HOM05D005776 ORTHO05D007333 1.2e-19 100.5 116 49.1
COL.COLO4_13087 Corchorus olitorius HOM05D005776 ORTHO05D007333 2.0e-19 99.8 164 41.5
Nitab4.5_0000984g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 2.0e-19 99.8 114 50.9
CSS0016523 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 2.6e-19 99.4 117 50.4
CSS0036517 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 2.6e-19 99.4 117 50.4
CAN.G337.59 Capsicum annuum HOM05D005776 ORTHO05D007333 2.6e-19 99.4 160 43.1
Cc07_g19620 Coffea canephora HOM05D005776 ORTHO05D007333 3.4e-19 99.0 169 42.0
A01p02000 Brassica napus HOM05D005776 ORTHO05D007333 5.7e-19 98.2 122 45.9
BraA01t00188Z Brassica rapa HOM05D005776 ORTHO05D007333 5.7e-19 98.2 122 45.9
Os03g0767500 Oryza sativa ssp. japonica HOM05D005776 ORTHO05D007333 7.5e-19 97.8 124 44.4
Aqoxy6G00958 Aquilegia oxysepala HOM05D005776 ORTHO05D007333 9.8e-19 97.4 120 50.8
Gohir.D02G141600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 1.3e-18 97.1 164 40.9
Gorai.005G159700 Gossypium raimondii HOM05D005776 ORTHO05D007333 1.3e-18 97.1 164 40.9
Oeu032924.1 Olea europaea HOM05D005776 ORTHO05D007333 1.3e-18 97.1 114 47.4
PGR102G0103 Punica granatum HOM05D005776 ORTHO05D007333 1.3e-18 97.1 162 42.0
Gohir.A03G118800 Gossypium hirsutum HOM05D005776 ORTHO05D007333 1.7e-18 96.7 164 40.2
Hma1.2p1_0739F.1_g211290 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 1.7e-18 96.7 164 41.5
Hma1.2p1_0739F.1_g211300 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 1.7e-18 96.7 164 41.5
AL7G14000 Arabidopsis lyrata HOM05D005776 ORTHO05D007333 2.2e-18 96.3 164 38.4
C01p02180 Brassica napus HOM05D005776 ORTHO05D007333 2.2e-18 96.3 122 45.1
BolC1t00210H Brassica oleracea HOM05D005776 ORTHO05D007333 2.2e-18 96.3 122 45.1
Carub.0007s0339 Capsella rubella HOM05D005776 ORTHO05D007333 2.2e-18 96.3 162 39.5
MELO3C007510.2 Cucumis melo HOM05D005776 ORTHO05D007333 2.2e-18 96.3 162 43.2
Peaxi162Scf00235g00723 Petunia axillaris HOM05D005776 ORTHO05D007333 2.2e-18 96.3 149 44.3
Ah.10g034500 Amaranthus hybridus HOM05D000575 ORTHO05D004448 2.8e-18 95.9 97 54.6
Hund05302 Selenicereus undatus HOM05D005776 ORTHO05D007333 2.8e-18 95.9 151 40.4
SalBow1G0426 Salvia bowleyana HOM05D005776 ORTHO05D007333 3.7e-18 95.5 141 39.0
SalBow1G6751 Salvia bowleyana HOM05D005776 ORTHO05D007333 3.7e-18 95.5 141 39.0
CARHR245300 Cardamine hirsuta HOM05D005776 ORTHO05D007333 4.9e-18 95.1 123 45.5
Sp7g34590 Schrenkiella parvula HOM05D005776 ORTHO05D007333 4.9e-18 95.1 127 45.7
vmacro11025 Vaccinium macrocarpon HOM05D005776 ORTHO05D007333 6.3e-18 94.7 100 54.0
EL10Ac2g03922 Beta vulgaris HOM05D005776 ORTHO05D007333 1.1e-17 94.0 128 45.3
Ciclev10026303m.g Citrus clementina HOM05D005776 ORTHO05D007333 1.4e-17 93.6 166 40.4
unitig_578.g16073 Utricularia gibba HOM05D005776 ORTHO05D007333 1.4e-17 93.6 155 43.2
QL06p044240 Quercus lobata HOM05D005776 ORTHO05D007333 1.8e-17 93.2 181 37.6
Migut.K00840 Erythranthe guttata HOM05D005776 ORTHO05D007333 9.2e-17 90.9 138 41.3
Zm00001eb213990 Zea mays HOM05D005776 ORTHO05D007333 1.2e-16 90.5 117 42.7
Lsat_1_v5_gn_5_160121 Lactuca sativa HOM05D005776 ORTHO05D007333 1.6e-16 90.1 153 41.2
AT4G37200 Arabidopsis thaliana HOM05D005776 ORTHO05D007333 2.7e-16 89.4 164 36.6
TAR628G1436 Trochodendron aralioides HOM05D005776 ORTHO05D007333 2.7e-16 89.4 106 50.0
Aa31LG6G13780 Aethionema arabicum HOM05D005776 ORTHO05D007333 4.5e-16 88.6 162 37.0
Duzib268G1673 Durio zibethinus HOM05D005776 ORTHO05D007333 4.5e-16 88.6 130 43.8
HPP92_012224 Vanilla planifolia HOM05D005776 ORTHO05D007333 5.9e-16 88.2 133 39.1
MBI16_g29183_MAGBIO Magnolia biondii HOM05D005776 ORTHO05D007333 3.8e-15 85.5 132 44.7
PSO675G1056 Papaver somniferum HOM05D005776 ORTHO05D007333 5.0e-15 85.1 130 43.1
CDE02G0814 Ceratophyllum demersum HOM05D005776 ORTHO05D007333 6.6e-15 84.7 131 42.0
PSO541G0480 Papaver somniferum HOM05D001143 ORTHO05D007333 2.5e-14 82.8 130 42.3
ATR0733G088 Amborella trichopoda HOM05D005776 ORTHO05D007333 3.6e-13 79.0 121 40.5
Sc15g0005670 Simmondsia chinensis HOM05D005776 ORTHO05D007333 1.0e-12 77.4 59 69.5
Gohir.D02G142060 Gossypium hirsutum HOM05D005776 ORTHO05D007333 1.8e-12 76.6 65 61.5
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 2.9e-10 69.3 107 41.1
C01p10450 Brassica napus HOM05D005776 ORTHO05D007333 1.8e-09 66.6 99 40.4
AagrBONN_evm.TU.Sc2ySwM_344.5430 Anthoceros agrestis HOM05D005776 ORTHO05D007333 3.2e-09 65.9 146 35.6
Dinv26775 Davidia involucrata HOM05D005776 ORTHO05D007333 1.2e-08 63.9 149 34.9
SMO329G0044 Selaginella moellendorffii HOM05D005776 ORTHO05D007333 2.0e-08 63.2 119 37.8
Mapoly0011s0067 Marchantia polymorpha HOM05D005776 ORTHO05D007333 1.7e-07 60.1 110 36.4
Glyma.11G060800 Glycine max HOM05D005776 ORTHO05D007333 3.3e-06 55.8 36 69.4
Gohir.A03G118600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 7.3e-06 54.7 34 73.5


User provided reference genes

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