Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 9.0e-94 347.1 194 100.0
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.4e-81 306.6 197 87.3
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.7e-74 282.3 196 82.1
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.5e-72 276.6 197 81.2
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 3.2e-59 232.3 198 71.2
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 8.0e-58 227.6 199 71.4
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 8.0e-58 227.6 201 69.2
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 1.7e-55 219.9 194 67.5
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 1.1e-51 207.2 199 69.3
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 1.6e-50 203.4 199 68.8
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.1e-46 190.7 194 62.9
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 5.2e-41 171.8 145 67.6
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 6.8e-41 171.4 196 62.2
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 8.9e-41 171.0 122 78.7
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.9e-39 166.0 199 54.8
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 1.7e-36 156.8 191 52.9
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.0e-36 155.2 192 52.6
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.1e-35 154.1 192 51.6
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.9e-35 153.3 143 60.8
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.9e-35 153.3 143 60.8
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 9.5e-35 151.0 126 69.8
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.1e-34 149.8 125 66.4
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 8.1e-34 147.9 96 79.2
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.8e-33 146.7 118 67.8
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 3.1e-33 146.0 146 58.2
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 5.2e-33 145.2 97 79.4
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 8.9e-33 144.4 202 50.0
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 8.9e-33 144.4 111 67.6
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 8.9e-33 144.4 123 65.9
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.6e-32 142.9 144 59.7
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.6e-32 142.9 167 53.3
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 3.4e-32 142.5 119 67.2
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 5.8e-32 141.7 191 53.9
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 9.8e-32 141.0 146 57.5
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.9e-31 139.4 196 49.5
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.9e-31 139.4 147 58.5
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 1.9e-30 136.7 181 49.2
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 1.9e-30 136.7 181 49.2
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.0e-28 131.0 154 57.1
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.3e-28 130.6 184 50.0
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.7e-28 130.2 124 59.7
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.5e-27 127.1 87 74.7
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 2.5e-27 126.3 210 43.8
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 3.3e-27 125.9 166 52.4
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 9.5e-27 124.4 89 71.9
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.2e-26 124.0 212 43.4
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 2.1e-26 123.2 89 71.9
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.8e-26 122.9 89 70.8
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 4.7e-26 122.1 190 46.8
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 4.7e-26 122.1 89 71.9
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.1e-25 120.9 196 46.4
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.4e-25 120.6 132 56.1
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 8.9e-25 117.9 161 49.7
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 2.0e-24 116.7 183 47.5
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 4.9e-23 112.1 202 50.5
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 6.4e-23 111.7 145 50.3
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.9e-19 100.1 85 60.0
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.9e-19 100.1 166 42.2
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.9e-19 100.1 97 57.7
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 2.5e-19 99.8 87 60.9
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.5e-19 99.8 113 54.9
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.5e-19 99.8 113 52.2
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.5e-19 99.8 112 53.6
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.5e-19 99.8 123 48.0
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.3e-19 99.4 112 55.4
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 3.3e-19 99.4 98 55.1
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 4.3e-19 99.0 109 56.9
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 4.3e-19 99.0 169 42.6
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 4.3e-19 99.0 87 59.8
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 5.6e-19 98.6 113 54.9
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.6e-19 98.6 109 56.9
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.6e-19 98.6 109 56.9
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 9.6e-19 97.8 96 52.1
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 9.6e-19 97.8 107 49.5
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 9.6e-19 97.8 139 51.1
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 9.6e-19 97.8 87 57.5
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 9.6e-19 97.8 184 38.6
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.2e-18 97.4 181 39.8
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.2e-18 97.4 96 55.2
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.2e-18 97.4 118 51.7
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.6e-18 97.1 122 51.6
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.6e-18 97.1 105 49.5
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.6e-18 97.1 114 54.4
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.6e-18 97.1 109 56.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.6e-18 97.1 109 55.0
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.6e-18 97.1 87 54.0
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.6e-18 97.1 87 54.0
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.1e-18 96.7 102 55.9
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.8e-18 96.3 113 55.8
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 2.8e-18 96.3 87 56.3
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.8e-18 96.3 109 54.1
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 3.6e-18 95.9 85 56.5
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.6e-18 95.9 87 56.3
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 3.6e-18 95.9 85 57.6
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 3.6e-18 95.9 88 54.5
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 4.7e-18 95.5 88 55.7
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 4.7e-18 95.5 85 57.6
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 4.7e-18 95.5 108 53.7
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 6.2e-18 95.1 88 56.8
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 6.2e-18 95.1 88 56.8
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 6.2e-18 95.1 112 53.6
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 6.2e-18 95.1 88 56.8
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 6.2e-18 95.1 87 55.2
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 6.2e-18 95.1 85 57.6
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 8.1e-18 94.7 88 53.4
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 8.1e-18 94.7 85 55.3
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 8.1e-18 94.7 83 57.8
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 8.1e-18 94.7 85 57.6
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 8.1e-18 94.7 170 37.1
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 8.1e-18 94.7 106 51.9
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 1.1e-17 94.4 88 54.5
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 1.1e-17 94.4 112 50.9
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 1.1e-17 94.4 179 42.5
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.1e-17 94.4 112 50.9
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.1e-17 94.4 85 56.5
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.1e-17 94.4 85 56.5
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.1e-17 94.4 85 55.3
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.1e-17 94.4 87 52.9
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.4e-17 94.0 87 54.0
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 2.4e-17 93.2 110 55.5
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.4e-17 93.2 85 56.5
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.4e-17 93.2 85 52.9
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 3.1e-17 92.8 87 52.9
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 3.1e-17 92.8 85 55.3
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 4.0e-17 92.4 83 55.4
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 4.0e-17 92.4 98 49.0
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 4.0e-17 92.4 88 55.7
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 5.2e-17 92.0 172 40.7
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 5.2e-17 92.0 81 60.5
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 8.9e-17 91.3 94 51.1
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.2e-16 90.9 201 44.8
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.5e-16 90.5 85 54.1
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 2.6e-16 89.7 85 52.9
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.6e-16 89.7 108 50.9
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 4.4e-16 89.0 183 38.3
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 5.8e-16 88.6 85 52.9
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 7.6e-16 88.2 85 51.8
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.9e-14 83.6 106 44.3
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.9e-14 83.6 194 38.1
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 9.3e-14 81.3 109 51.4
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 1.2e-13 80.9 94 56.4
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.1e-13 80.1 73 57.5
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 3.5e-13 79.3 84 50.0
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 2.3e-12 76.6 73 52.1
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.5e-11 73.9 69 53.6
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.6e-10 70.5 125 35.2
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 1.4e-09 67.4 69 55.1
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.8e-09 67.0 58 62.1
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 2.4e-09 66.6 107 38.3
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 3.1e-09 66.2 71 56.3
Medtr0065s0080 Medicago truncatula HOM05D004087 ORTHO05D004787 3.1e-09 66.2 100 47.0
Medtr1g116050 Medicago truncatula HOM05D004087 ORTHO05D004787 4.0e-09 65.9 100 48.0
Medtr3g040420 Medicago truncatula HOM05D004087 ORTHO05D004787 5.3e-09 65.5 100 47.0
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 6.9e-09 65.1 61 59.0
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 6.9e-09 65.1 78 53.8
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.5e-08 63.9 82 53.7
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 4.5e-08 62.4 102 38.2
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.5e-08 62.4 105 44.8
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 7.6e-08 61.6 81 46.9
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.7e-07 60.5 75 49.3
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 2.2e-07 60.1 56 57.1
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 2.2e-07 60.1 56 53.6
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 3.2e-06 56.2 53 52.8


User provided reference genes

Program Settings