Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 9.4e-248 859.8 437 100.0
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 5.9e-234 813.9 437 93.4
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.7e-231 805.1 437 92.2
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 7.7e-226 786.9 437 89.7
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 5.5e-224 780.8 404 97.3
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.5e-216 756.1 436 86.5
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 3.2e-216 755.0 436 87.6
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 5.5e-216 754.2 436 86.7
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 1.4e-211 739.6 437 84.0
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.5e-208 726.9 437 84.7
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.5e-208 726.9 437 84.7
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 4.1e-203 711.4 456 79.6
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 7.0e-203 710.7 457 79.2
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 4.1e-195 684.9 451 76.9
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 6.0e-186 654.4 434 74.9
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 3.0e-185 652.1 435 75.9
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 8.6e-185 650.6 435 75.6
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 8.6e-185 650.6 435 75.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.9e-184 649.4 433 75.8
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.3e-184 647.5 435 75.4
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.4e-182 643.3 435 75.2
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.3e-182 642.5 435 75.2
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 3.1e-182 642.1 432 75.7
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 5.8e-181 637.9 433 74.8
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 6.4e-180 634.4 435 72.9
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.1e-179 633.6 436 73.4
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 5.4e-179 631.3 445 72.8
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 5.4e-179 631.3 432 72.2
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.7e-178 629.0 430 73.3
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.7e-178 629.0 432 72.7
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 7.8e-178 627.5 436 72.9
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.7e-177 626.3 436 72.5
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.3e-177 625.9 430 73.0
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.6e-175 619.8 432 71.3
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 6.2e-175 617.8 432 70.8
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 8.1e-175 617.5 430 71.6
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.4e-174 615.9 439 72.0
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.4e-174 615.9 439 72.0
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 4.0e-174 615.1 430 71.2
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 8.9e-174 614.0 432 70.4
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 8.9e-174 614.0 439 71.8
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 8.9e-174 614.0 435 72.9
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 8.9e-174 614.0 432 69.9
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.3e-172 610.1 430 70.0
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.7e-172 609.8 432 71.8
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.7e-172 609.8 408 74.0
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.9e-171 606.3 429 70.4
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.2e-170 603.6 433 70.2
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 5.1e-169 598.2 443 68.8
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.1e-168 597.0 435 69.9
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.9e-168 596.3 460 65.9
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.8e-167 592.4 435 68.5
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 4.7e-167 591.7 461 66.4
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.4e-166 589.3 432 68.1
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 5.3e-166 588.2 436 67.0
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 9.0e-166 587.4 440 66.6
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 2.2e-164 582.8 430 67.4
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 8.4e-164 580.9 435 66.2
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.1e-163 580.5 419 67.1
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 7.1e-163 577.8 433 67.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 4.6e-162 575.1 439 65.8
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 2.4e-158 562.8 391 72.1
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.5e-157 560.1 430 65.6
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 4.5e-157 558.5 400 70.5
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.2e-156 556.2 400 70.0
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 3.5e-154 548.9 430 63.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 6.0e-154 548.1 442 64.5
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.1e-153 545.0 431 63.6
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 9.6e-152 540.8 430 61.9
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.3e-151 540.4 435 64.1
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.8e-151 539.3 434 63.6
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 6.2e-151 538.1 431 61.9
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.1e-150 537.3 382 69.1
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.4e-150 537.0 451 59.2
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 9.0e-150 534.3 357 75.9
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 2.6e-149 532.7 430 61.6
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.7e-148 530.0 444 60.1
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.9e-147 526.6 426 64.3
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.5e-147 526.2 450 59.3
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.5e-147 526.2 446 59.4
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.2e-147 525.8 451 59.2
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 2.7e-146 522.7 443 60.9
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.5e-146 522.3 437 59.7
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 4.6e-146 521.9 432 64.4
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 6.0e-146 521.5 434 61.3
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 5.7e-144 515.0 451 58.5
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 3.7e-143 512.3 451 58.1
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 3.7e-143 512.3 416 64.2
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.4e-142 509.6 434 60.6
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.5e-141 506.9 383 65.8
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.5e-141 506.9 382 67.0
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.6e-141 504.6 349 71.1
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 2.2e-140 503.1 368 70.1
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.9e-140 502.7 430 60.7
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 4.9e-140 501.9 440 61.1
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 8.4e-140 501.1 430 61.2
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 3.2e-139 499.2 383 66.6
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 7.1e-139 498.0 435 59.3
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.2e-138 497.3 394 63.7
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 3.5e-138 495.7 394 63.5
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 7.9e-138 494.6 364 65.9
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.1e-136 490.7 344 72.4
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 4.3e-136 488.8 429 60.8
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 6.9e-134 481.5 433 57.0
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-133 480.7 434 60.8
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.2e-131 472.2 416 57.9
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.1e-130 469.9 307 73.6
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.8e-129 464.5 431 55.7
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 2.5e-128 463.0 420 56.2
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.3e-128 462.2 464 55.8
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.4e-126 456.4 299 74.9
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 5.0e-124 448.7 429 55.5
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.5e-124 448.4 331 67.7
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.5e-124 448.4 432 54.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 6.7e-121 438.3 384 59.6
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 4.8e-119 432.2 435 54.0
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 8.5e-116 421.4 439 52.8
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 8.5e-116 421.4 433 53.8
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.2e-114 417.5 353 60.1
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-96 357.8 431 51.0
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 2.0e-96 357.1 277 65.0
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 3.4e-96 356.3 322 58.1
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.9e-93 345.5 278 61.5
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.2e-91 338.6 278 61.2
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.6e-90 337.4 278 60.4
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 4.7e-90 335.9 278 59.7
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.3e-87 327.8 352 50.6
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.3e-87 327.8 292 58.9
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.2e-86 321.6 278 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.3e-84 317.8 326 48.2
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 3.9e-84 316.2 230 67.4
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 4.7e-74 282.7 157 92.4
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.4e-71 272.3 177 78.5
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 8.3e-71 271.9 157 87.3
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.1e-70 271.6 192 66.7
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.4e-70 271.2 156 87.2
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 5.4e-70 269.2 163 73.6
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.7e-68 264.2 155 85.8
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 4.7e-66 256.1 366 42.9
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.8e-65 254.2 156 82.1
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.8e-64 249.2 145 85.5
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 2.3e-60 237.3 486 36.4
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 2.5e-59 233.8 275 46.5
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 2.8e-58 230.3 513 36.1
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.8e-58 230.3 141 81.6
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.4e-56 223.4 184 64.7
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 4.4e-56 223.0 133 85.7
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.9e-55 220.3 230 49.1
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.0e-52 211.8 182 60.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.6e-50 204.5 122 81.1
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 2.2e-47 194.1 155 59.4
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 4.9e-47 193.0 131 80.2
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.8e-42 177.2 302 37.7
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 5.8e-40 169.5 99 88.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 2.2e-39 167.5 178 54.5
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 3.8e-39 166.8 106 79.2
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.3e-34 151.8 140 55.7
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 8.4e-31 139.0 146 52.7
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 3.0e-28 130.6 119 53.8
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 1.8e-25 121.3 70 87.1
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.6e-21 108.2 68 82.4
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.1e-21 107.8 215 35.3
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.9e-20 103.6 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.7e-18 97.1 56 91.1
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.6e-16 90.9 98 51.0
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 2.7e-13 80.9 257 28.0
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 3.0e-12 77.4 57 64.9


User provided reference genes

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