Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G083100 Glycine max HOM05D006955 ORTHO05D008701 5.8e-147 524.2 271 100.0
Glyma.08G260400 Glycine max HOM05D006955 ORTHO05D008701 3.0e-111 405.6 228 95.2
Phvul.002G082400 Phaseolus vulgaris HOM05D006955 ORTHO05D008701 7.6e-107 391.0 228 91.2
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea HOM05D006955 ORTHO05D008701 5.7e-102 374.8 245 83.3
VMungo1215G2393 Vigna mungo HOM05D006955 ORTHO05D008701 9.7e-102 374.0 229 89.1
Lalb_Chr17g0342031 Lupinus albus HOM05D006955 ORTHO05D008701 2.4e-100 369.4 228 85.5
TPR.G38250 Trifolium pratense HOM05D006955 ORTHO05D008701 5.3e-100 368.2 228 86.0
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea HOM05D006955 ORTHO05D008701 1.0e-98 364.0 226 86.7
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea HOM05D006955 ORTHO05D008701 1.0e-98 364.0 226 86.7
Ca_28012_v3 Cicer arietinum L. HOM05D006955 ORTHO05D008701 2.9e-98 362.5 228 84.6
Lj2g0004168 Lotus japonicus HOM05D006955 ORTHO05D008701 3.2e-97 359.0 228 84.2
Psat2g093000 Pisum sativum HOM05D006955 ORTHO05D008701 1.8e-95 353.2 228 83.3
Medtr5g055150 Medicago truncatula HOM05D006955 ORTHO05D008701 5.1e-95 351.7 228 81.6
CANSAT56G1672 Cannabis sativa HOM05D006955 ORTHO05D008701 1.3e-90 337.0 227 78.9
Actinidia14871 Actinidia chinensis HOM05D006955 ORTHO05D008701 9.4e-89 330.9 228 77.2
Dinv21110 Davidia involucrata HOM05D006955 ORTHO05D008701 1.6e-88 330.1 228 76.8
TWI79G1443 Tripterygium wilfordii HOM05D006955 ORTHO05D008701 2.1e-88 329.7 228 76.3
CSS0004457 Camellia sinensis var. sinensis HOM05D006955 ORTHO05D008701 6.1e-88 328.2 228 76.3
RcHm_v2.0_Chr4g0435501 Rosa chinensis HOM05D006955 ORTHO05D008701 1.0e-87 327.4 226 75.7
Lj3C1017T15 Lonicera japonica HOM05D006955 ORTHO05D008701 1.8e-87 326.6 228 75.9
Actinidia16638 Actinidia chinensis HOM05D006955 ORTHO05D008701 6.7e-87 324.7 228 75.0
Nn3g17799 Nelumbo nucifera HOM05D006955 ORTHO05D008701 6.7e-87 324.7 228 76.3
Gohir.D13G071200 Gossypium hirsutum HOM05D006955 ORTHO05D008701 1.1e-86 323.9 228 75.4
Gorai.013G081500 Gossypium raimondii HOM05D006955 ORTHO05D008701 2.0e-86 323.2 228 75.4
Sp1g11840 Schrenkiella parvula HOM05D006955 ORTHO05D008701 2.0e-86 323.2 239 70.3
Gohir.A13G053700 Gossypium hirsutum HOM05D006955 ORTHO05D008701 2.6e-86 322.8 228 75.0
Manes.14G100100 Manihot esculenta HOM05D006955 ORTHO05D008701 3.3e-86 322.4 219 78.5
MELO3C012231.2 Cucumis melo HOM05D006955 ORTHO05D008701 7.4e-86 321.2 254 68.1
Potri.008G118800 Populus trichocarpa HOM05D006955 ORTHO05D008701 1.7e-85 320.1 228 74.1
Haze_17460 Corylus avellana HOM05D006955 ORTHO05D008701 4.8e-85 318.5 228 72.8
Prupe.1G308500 Prunus persica HOM05D006955 ORTHO05D008701 4.8e-85 318.5 226 73.9
CsaV3_5G034170 Cucumis sativus L. HOM05D006955 ORTHO05D008701 8.2e-85 317.8 228 72.8
SGA_v2.0_scaffold124G33553 Striga asiatica HOM05D006955 ORTHO05D008701 3.1e-84 315.8 225 72.9
Peaxi162Scf00382g00128 Petunia axillaris HOM05D006955 ORTHO05D008701 4.1e-84 315.5 228 72.4
Sed0012161 Sechium edule HOM05D006955 ORTHO05D008701 4.1e-84 315.5 228 72.4
Aqoxy3G00330 Aquilegia oxysepala HOM05D006955 ORTHO05D008701 7.0e-84 314.7 228 72.4
Eucgr.G02335 Eucalyptus grandis HOM05D006955 ORTHO05D008701 9.1e-84 314.3 228 73.2
Sabra08G0090200 Salix brachista HOM05D006955 ORTHO05D008701 1.5e-83 313.5 228 72.4
COL.COLO4_07900 Corchorus olitorius HOM05D006955 ORTHO05D008701 3.4e-83 312.4 228 73.2
Migut.L01079 Erythranthe guttata HOM05D006955 ORTHO05D008701 1.3e-82 310.5 225 71.6
Rhsim12G0082400 Rhododendron simsii HOM05D006955 ORTHO05D008701 1.7e-82 310.1 238 69.3
Atru.chr11.1296 Acer truncatum HOM05D006955 ORTHO05D008701 3.8e-82 308.9 228 71.9
SalBow8G1483 Salvia bowleyana HOM05D006955 ORTHO05D008701 3.8e-82 308.9 228 72.4
Cc11_g10340 Coffea canephora HOM05D006955 ORTHO05D008701 5.0e-82 308.5 226 71.7
GSVIVG01011919001 Vitis vinifera HOM05D006955 ORTHO05D008701 5.0e-82 308.5 228 72.8
Nitab4.5_0004895g0100 Nicotiana tabacum HOM05D006955 ORTHO05D008701 6.5e-82 308.1 226 72.1
THA.LOC104805251 Tarenaya hassleriana HOM05D006955 ORTHO05D008701 8.5e-82 307.8 228 70.6
AUR62002894 Chenopodium quinoa HOM05D006955 ORTHO05D008701 1.1e-81 307.4 228 71.5
PSO017G5158 Papaver somniferum HOM05D006955 ORTHO05D008701 1.4e-81 307.0 228 71.1
ECA233G4186 Erigeron canadensis HOM05D006955 ORTHO05D008701 5.5e-81 305.1 225 69.8
PSO478G1614 Papaver somniferum HOM05D006955 ORTHO05D008701 5.5e-81 305.1 228 70.6
vmacro01371 Vaccinium macrocarpon HOM05D006955 ORTHO05D008701 5.5e-81 305.1 268 63.4
FAN07G1824 Fragaria x ananassa HOM05D006955 ORTHO05D008701 7.2e-81 304.7 222 71.2
Ah.02g127040 Amaranthus hybridus HOM05D006955 ORTHO05D008701 1.2e-80 303.9 228 71.1
Sc11g0003240 Simmondsia chinensis HOM05D006955 ORTHO05D008701 1.2e-80 303.9 228 69.7
Sc11g0003300 Simmondsia chinensis HOM05D006955 ORTHO05D008701 1.2e-80 303.9 228 69.7
MSTRG.13515 Avicennia marina HOM05D006955 ORTHO05D008701 8.0e-80 301.2 225 70.7
Hund25084 Selenicereus undatus HOM05D006955 ORTHO05D008701 1.0e-79 300.8 228 68.9
FAN22G1329 Fragaria x ananassa HOM05D006955 ORTHO05D008701 5.2e-79 298.5 243 67.1
Lsat_1_v5_gn_8_38900 Lactuca sativa HOM05D006955 ORTHO05D008701 2.6e-78 296.2 204 75.0
DCAR_023669 Daucus carota HOM05D006955 ORTHO05D008701 4.4e-78 295.4 211 72.5
PGR119G2132 Punica granatum HOM05D006955 ORTHO05D008701 9.7e-78 294.3 228 69.3
Oeu033300.1 Olea europaea HOM05D006955 ORTHO05D008701 1.3e-77 293.9 261 62.5
CARHR013710 Cardamine hirsuta HOM05D006955 ORTHO05D008701 3.7e-77 292.4 228 67.1
TAR629G1122 Trochodendron aralioides HOM05D006955 ORTHO05D008701 4.8e-77 292.0 251 63.3
QL01p043991 Quercus lobata HOM05D006955 ORTHO05D008701 6.3e-77 291.6 226 70.4
Thhalv10008697m.g Eutrema salsugineum HOM05D006955 ORTHO05D008701 8.2e-77 291.2 228 66.7
ATR0665G168 Amborella trichopoda HOM05D006955 ORTHO05D008701 1.4e-76 290.4 226 68.1
AL1G25090 Arabidopsis lyrata HOM05D006955 ORTHO05D008701 2.6e-75 286.2 228 66.2
Aa31LG1G1480 Aethionema arabicum HOM05D006955 ORTHO05D008701 3.5e-75 285.8 226 66.8
C05p09970 Brassica napus HOM05D006955 ORTHO05D008701 7.7e-75 284.6 228 65.4
FAN12G2251 Fragaria x ananassa HOM05D006955 ORTHO05D008701 7.7e-75 284.6 222 67.1
AT1G13330 Arabidopsis thaliana HOM05D006955 ORTHO05D008701 1.7e-74 283.5 228 65.8
EL10Ac6g14443 Beta vulgaris HOM05D006955 ORTHO05D008701 3.8e-74 282.3 225 65.8
Thecc.02G357700 Theobroma cacao HOM05D006955 ORTHO05D008701 8.5e-74 281.2 194 75.8
MD16G1044800 Malus domestica HOM05D006955 ORTHO05D008701 4.2e-73 278.9 225 67.6
Nitab4.5_0003823g0050 Nicotiana tabacum HOM05D006955 ORTHO05D008701 4.2e-73 278.9 204 71.6
A06p08430 Brassica napus HOM05D006955 ORTHO05D008701 5.5e-73 278.5 228 64.5
BraA06t24039Z Brassica rapa HOM05D006955 ORTHO05D008701 5.5e-73 278.5 228 64.5
BolC5t29739H Brassica oleracea HOM05D006955 ORTHO05D008701 7.2e-73 278.1 238 62.6
FAN12G1265 Fragaria x ananassa HOM05D006955 ORTHO05D008701 7.2e-73 278.1 233 64.8
BcaC05g25057 Brassica carinata HOM05D006955 ORTHO05D008701 2.7e-72 276.2 228 64.0
BcaC05g25064 Brassica carinata HOM05D006955 ORTHO05D008701 2.7e-72 276.2 228 64.0
Ciclev10032679m.g Citrus clementina HOM05D006955 ORTHO05D008701 6.1e-72 275.0 226 65.5
Cpa.g.sc1.190 Carica papaya HOM05D006955 ORTHO05D008701 2.3e-71 273.1 225 66.7
HanXRQChr08g0214231 Helianthus annuus HOM05D006955 ORTHO05D008701 2.3e-71 273.1 228 66.2
MD13G1044000 Malus domestica HOM05D006955 ORTHO05D008701 6.7e-71 271.6 225 65.8
BolC5t29750H Brassica oleracea HOM05D006955 ORTHO05D008701 8.8e-71 271.2 211 66.4
ClCG05G022860 Citrullus lanatus HOM05D006955 ORTHO05D008701 1.2e-70 270.8 243 63.0
Duzib251G0691 Durio zibethinus HOM05D006955 ORTHO05D008701 1.2e-70 270.8 228 66.7
TAR622G0049 Trochodendron aralioides HOM05D006955 ORTHO05D008701 9.7e-70 267.7 228 63.6
CiPaw.15G005500 Carya illinoinensis HOM05D006955 ORTHO05D008701 6.3e-69 265.0 195 72.3
AUR62035251 Chenopodium quinoa HOM05D006955 ORTHO05D008701 9.1e-68 261.2 228 63.6
Carub.0001s1306 Capsella rubella HOM05D006955 ORTHO05D008701 1.3e-66 257.3 228 61.0
HPP92_011092 Vanilla planifolia HOM05D006955 ORTHO05D008701 1.4e-63 247.3 215 60.9
SHI33974 Sapria himalayana HOM05D006955 ORTHO05D008701 6.8e-63 245.0 214 62.6
HPP92_011108 Vanilla planifolia HOM05D006955 ORTHO05D008701 2.0e-62 243.4 208 61.5
SEGI_38068 Sequoiadendron giganteum HOM05D006955 ORTHO05D008701 4.4e-62 242.3 194 66.0
Zm00001eb216450 Zea mays HOM05D006955 ORTHO05D008701 4.4e-62 242.3 223 59.6
Solyc05g009560.4 Solanum lycopersicum HOM05D006955 ORTHO05D008701 1.2e-59 234.2 223 57.4
Sopen05g005370 Solanum pennellii HOM05D006955 ORTHO05D008701 1.2e-59 234.2 223 57.4
CAN.G656.28 Capsicum annuum HOM05D006955 ORTHO05D008701 3.3e-57 226.1 223 55.6
CDE05G2755 Ceratophyllum demersum HOM05D006955 ORTHO05D008701 1.6e-56 223.8 224 55.8
Mapoly0015s0151 Marchantia polymorpha HOM05D006955 ORTHO05D008701 4.0e-55 219.2 216 54.2
SMO203G0092 Selaginella moellendorffii HOM05D006955 ORTHO05D008701 1.8e-52 210.3 208 54.3
CBR_g3130 Chara braunii HOM05D006955 ORTHO05D008701 4.4e-46 189.1 214 48.6
CAN.G706.23 Capsicum annuum HOM05D006955 ORTHO05D008701 7.0e-44 181.8 185 57.8
PGSC0003DMG402012965 Solanum tuberosum HOM05D006955 ORTHO05D008701 3.5e-43 179.5 140 66.4
Pp3c23_21510 Physcomitrium patens HOM05D006955 ORTHO05D008701 3.4e-38 162.9 197 45.7
CAN.G884.17 Capsicum annuum HOM05D000526 ORTHO05D000956 1.2e-32 144.4 211 46.0
Potri.010G127101 Populus trichocarpa HOM05D006955 ORTHO05D008701 3.0e-26 123.2 163 48.5
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 5.1e-26 122.5 99 65.7
unitig_27.g25247 Utricularia gibba HOM05D006955 ORTHO05D008701 8.6e-26 121.7 96 64.6
MCO07G460 Micromonas commoda HOM05D006955 ORTHO05D008701 4.0e-15 86.3 208 29.3
Cre06.g284400 Chlamydomonas reinhardtii HOM05D006955 ORTHO05D008701 9.0e-15 85.1 221 29.9
Medtr5g055130 Medicago truncatula HOM05D002518 ORTHO05D002630 7.8e-11 72.0 143 44.1
Medtr4g007850 Medicago truncatula HOM05D003710 ORTHO05D258575 5.1e-10 69.3 108 47.2
PRCOL_00000208 Prasinoderma coloniale HOM05D006955 ORTHO05D008701 9.6e-09 65.1 230 27.4


User provided reference genes

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