Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 2.9e-100 368.6 196 100.0
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 3.4e-80 302.0 197 87.3
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 5.6e-75 284.6 196 83.7
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 9.5e-75 283.9 197 83.8
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 2.8e-66 255.8 200 74.5
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 1.1e-65 253.8 198 76.3
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 6.8e-65 251.1 192 75.0
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.6e-64 249.2 198 73.7
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 3.3e-51 205.7 198 65.2
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 3.6e-50 202.2 198 64.6
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.4e-49 199.5 195 65.1
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 7.8e-45 184.5 194 60.8
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 7.8e-45 184.5 197 60.4
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 7.8e-45 184.5 122 85.2
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 4.3e-43 178.7 181 61.3
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 7.3e-43 177.9 192 58.3
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 6.9e-41 171.4 143 66.4
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 6.9e-41 171.4 143 66.4
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.2e-40 170.6 197 56.3
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.0e-40 169.9 185 56.8
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.8e-39 165.6 136 71.3
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 5.4e-38 161.8 135 68.1
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 9.3e-38 161.0 125 72.0
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 2.1e-37 159.8 160 60.6
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 7.9e-37 157.9 118 72.9
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.0e-36 157.5 144 66.0
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.8e-36 156.8 111 73.0
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 3.0e-36 156.0 101 80.2
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 5.1e-36 155.2 127 71.7
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 8.7e-36 154.5 119 73.1
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 8.7e-36 154.5 146 58.2
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 1.3e-34 150.6 101 80.2
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.8e-34 149.4 145 60.0
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.8e-34 149.4 146 57.5
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 8.1e-34 147.9 199 48.2
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.4e-33 147.1 151 58.3
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 3.4e-32 142.5 132 63.6
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 5.8e-32 141.7 156 57.7
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 6.4e-31 138.3 173 53.8
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 1.1e-30 137.5 181 49.7
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 1.1e-30 137.5 181 49.7
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.2e-29 134.0 105 68.6
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 7.9e-29 131.3 93 74.2
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.3e-28 130.6 156 55.8
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.3e-28 129.8 93 73.1
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 3.0e-28 129.4 177 49.7
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 3.9e-28 129.0 185 48.6
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.1e-27 127.5 87 75.9
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 1.9e-27 126.7 95 70.5
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 9.6e-27 124.4 180 47.2
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.3e-26 124.0 147 51.0
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.6e-26 123.6 192 47.4
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.6e-26 123.6 187 46.0
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 6.2e-26 121.7 191 46.6
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 9.0e-25 117.9 137 54.7
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.2e-24 117.5 185 47.0
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 3.2e-22 109.4 98 59.2
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 4.6e-21 105.5 101 53.5
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 4.6e-21 105.5 123 50.4
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 1.0e-20 104.4 193 42.5
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.8e-20 103.6 105 52.4
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.3e-20 103.2 113 52.2
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 3.9e-20 102.4 89 59.6
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 3.9e-20 102.4 168 44.6
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.9e-20 102.4 101 57.4
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 5.1e-20 102.1 91 60.4
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 8.7e-20 101.3 113 53.1
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 8.7e-20 101.3 102 52.0
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.1e-19 100.9 112 53.6
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.5e-19 100.5 87 58.6
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 2.5e-19 99.8 100 55.0
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 3.3e-19 99.4 107 51.4
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 3.3e-19 99.4 124 50.8
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.3e-19 99.4 89 55.1
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 3.3e-19 99.4 89 55.1
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 4.3e-19 99.0 113 52.2
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 4.3e-19 99.0 164 42.7
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 4.3e-19 99.0 130 45.4
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 5.7e-19 98.6 89 57.3
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 5.7e-19 98.6 109 53.2
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 7.4e-19 98.2 109 53.2
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 7.4e-19 98.2 89 56.2
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 7.4e-19 98.2 91 56.0
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 7.4e-19 98.2 89 57.3
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 7.4e-19 98.2 92 54.3
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 7.4e-19 98.2 91 54.9
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 9.7e-19 97.8 169 39.6
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.7e-19 97.8 109 53.2
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 9.7e-19 97.8 87 58.6
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.3e-18 97.4 90 57.8
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 1.3e-18 97.4 90 57.8
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.3e-18 97.4 90 57.8
Medtr0065s0080 Medicago truncatula HOM05D004087 ORTHO05D004787 1.3e-18 97.4 98 60.2
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 1.6e-18 97.1 90 54.4
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 1.6e-18 97.1 109 51.4
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.6e-18 97.1 183 38.3
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.6e-18 97.1 177 39.0
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 2.2e-18 96.7 116 48.3
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.2e-18 96.7 89 56.2
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 2.2e-18 96.7 87 57.5
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.2e-18 96.7 109 51.4
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.2e-18 96.7 89 55.1
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.8e-18 96.3 85 58.8
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.8e-18 96.3 184 38.6
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 2.8e-18 96.3 108 50.9
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 4.8e-18 95.5 113 51.3
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 4.8e-18 95.5 113 51.3
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.8e-18 95.5 89 56.2
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.8e-18 95.5 126 46.8
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.8e-18 95.5 87 54.0
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 6.3e-18 95.1 178 38.8
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 6.3e-18 95.1 188 39.4
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 8.2e-18 94.7 112 48.2
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 8.2e-18 94.7 112 48.2
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 8.2e-18 94.7 85 56.5
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.2e-18 94.7 195 37.9
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 8.2e-18 94.7 102 49.0
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 8.2e-18 94.7 90 56.7
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.1e-17 94.4 112 50.0
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.4e-17 94.0 148 40.5
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.4e-17 94.0 186 37.6
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.8e-17 93.6 96 52.1
Medtr3g040420 Medicago truncatula HOM05D004087 ORTHO05D004787 2.4e-17 93.2 98 58.2
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 2.4e-17 93.2 106 50.0
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 2.4e-17 93.2 178 38.8
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 5.3e-17 92.0 107 47.7
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 5.3e-17 92.0 87 54.0
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 9.0e-17 91.3 106 50.0
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 9.0e-17 91.3 110 49.1
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.2e-16 90.9 188 36.2
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.5e-16 90.5 110 49.1
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.5e-16 90.5 87 52.9
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 2.0e-16 90.1 110 49.1
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 2.0e-16 90.1 91 50.5
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 3.4e-16 89.4 188 36.2
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 4.5e-16 89.0 172 38.4
Medtr1g116050 Medicago truncatula HOM05D004087 ORTHO05D004787 4.5e-16 89.0 100 55.0
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.3e-15 87.4 162 37.7
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.7e-15 87.0 160 43.1
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 2.9e-15 86.3 194 35.1
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.8e-15 85.9 108 45.4
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 5.5e-14 82.0 215 36.3
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.6e-13 80.5 73 58.9
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 2.7e-13 79.7 84 51.2
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 3.6e-13 79.3 81 55.6
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 4.6e-13 79.0 109 46.8
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 6.1e-13 78.6 94 51.1
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.0e-12 77.8 67 70.1
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 2.3e-12 76.6 73 53.4
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 5.1e-12 75.5 69 59.4
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.1e-11 74.3 69 55.1
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 1.5e-11 73.9 99 43.4
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 7.4e-11 71.6 119 37.8
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.7e-10 70.5 105 43.8
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 3.1e-09 66.2 71 50.7
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 4.1e-09 65.9 62 59.7
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.2e-08 64.3 76 46.1
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.5e-08 63.9 80 51.2
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 3.4e-08 62.8 82 47.6
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 5.9e-08 62.0 60 55.0
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.7e-07 60.5 210 30.5
CSS0038746 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 3.8e-07 59.3 139 41.7
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 8.5e-07 58.2 81 43.2
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.5e-06 56.6 53 54.7
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 4.2e-06 55.8 91 37.4


User provided reference genes

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