Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 5.6e-267 923.7 468 100.0
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.2e-203 713.4 475 77.9
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.3e-202 709.9 473 78.9
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 3.7e-202 708.4 472 79.0
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 8.3e-202 707.2 473 78.2
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.4e-201 706.4 470 78.3
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 6.0e-200 701.0 475 78.3
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.5e-198 695.7 476 78.4
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 2.3e-196 689.1 471 77.1
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 3.1e-196 688.7 472 76.5
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 3.1e-196 688.7 472 76.7
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.5e-195 686.4 449 79.5
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 4.4e-195 684.9 472 74.8
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 3.7e-194 681.8 489 73.8
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.1e-193 680.2 469 76.5
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.1e-193 680.2 469 76.3
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.2e-193 678.7 469 76.1
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.6e-192 676.4 477 74.4
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.6e-192 674.9 480 75.0
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 6.0e-192 674.5 471 75.4
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 6.0e-192 674.5 471 75.4
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 6.0e-192 674.5 472 76.3
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.0e-191 673.7 472 75.6
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 2.3e-191 672.5 471 75.2
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.3e-190 668.7 471 74.9
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 4.3e-190 668.3 472 75.0
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 9.5e-190 667.2 472 74.6
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 9.5e-190 667.2 513 71.3
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 2.8e-189 665.6 471 73.2
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 3.6e-189 665.2 472 73.7
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 5.2e-188 661.4 471 74.1
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 6.8e-188 661.0 487 73.1
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.0e-187 659.4 504 71.2
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 5.8e-187 657.9 487 72.5
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 7.5e-187 657.5 409 82.6
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 9.9e-187 657.1 506 70.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.4e-186 654.4 462 74.2
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.1e-185 653.7 471 73.0
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.9e-185 652.9 471 72.6
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 3.2e-185 652.1 471 73.7
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 7.1e-185 651.0 486 72.2
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.2e-184 650.2 491 70.7
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.0e-183 647.1 474 72.4
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.3e-183 646.7 478 71.8
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.7e-183 646.4 471 73.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.7e-183 646.4 471 71.5
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 2.3e-183 646.0 492 70.7
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.3e-183 646.0 527 66.0
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 5.1e-183 644.8 483 71.4
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.5e-182 643.3 480 72.3
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.2e-181 640.2 472 71.6
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 2.8e-181 639.0 471 72.0
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 3.6e-181 638.6 506 69.0
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 8.1e-181 637.5 475 71.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-180 636.7 472 71.4
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.1e-180 635.6 488 68.6
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 5.2e-180 634.8 473 71.5
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.2e-179 633.6 471 72.4
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 2.0e-179 632.9 470 71.7
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.9e-178 628.2 474 70.5
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 6.4e-178 627.9 472 71.4
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 2.4e-177 625.9 471 69.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 5.4e-177 624.8 476 70.6
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 9.2e-177 624.0 478 69.5
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.2e-176 623.6 471 69.4
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 4.6e-176 621.7 470 71.1
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 7.8e-176 620.9 431 75.6
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 3.9e-175 618.6 470 70.2
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.9e-175 618.6 457 71.6
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.5e-174 615.9 484 67.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.3e-174 614.4 462 71.4
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 7.3e-174 614.4 484 69.2
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.3e-173 613.6 471 69.6
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 2.1e-173 612.8 472 69.7
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.1e-172 610.5 477 69.6
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.4e-172 609.4 471 69.4
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 9.0e-172 607.4 472 68.6
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-171 607.1 470 70.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.2e-171 607.1 470 70.0
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 5.8e-171 604.7 472 69.1
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.3e-170 603.6 473 69.1
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 2.2e-170 602.8 378 79.9
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 2.9e-170 602.4 471 67.5
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 3.8e-170 602.1 471 70.1
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 2.4e-169 599.4 470 67.7
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 3.2e-169 599.0 470 68.5
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 3.2e-169 599.0 470 68.5
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 9.3e-169 597.4 481 68.4
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 9.3e-169 597.4 470 68.5
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 4.6e-168 595.1 473 67.2
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 4.6e-168 595.1 394 78.7
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.0e-167 594.0 531 62.1
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.3e-167 593.6 475 68.8
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.3e-166 588.6 484 65.7
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 9.6e-166 587.4 470 67.0
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.6e-165 586.6 474 68.1
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 4.8e-165 585.1 347 83.3
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 6.2e-165 584.7 468 66.0
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 6.2e-165 584.7 414 74.2
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.8e-164 583.2 516 63.0
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 2.4e-164 582.8 471 66.5
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.4e-164 582.8 472 66.7
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 2.0e-163 579.7 470 67.0
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 9.9e-163 577.4 481 67.6
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 9.9e-163 577.4 477 66.7
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 2.2e-162 576.2 462 67.1
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 4.2e-161 572.0 500 63.8
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.3e-159 567.0 477 65.4
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 5.1e-159 565.1 330 83.3
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.1e-158 563.9 403 73.0
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.9e-158 563.1 448 68.3
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.9e-158 563.1 470 65.5
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 3.3e-158 562.4 470 65.5
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 5.6e-158 561.6 478 63.0
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 9.6e-158 560.8 470 64.7
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.3e-157 560.5 487 64.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 3.7e-157 558.9 460 65.7
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 2.2e-154 549.7 482 61.6
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.3e-150 535.8 472 63.3
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 4.3e-150 535.4 440 65.7
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 4.8e-149 531.9 460 60.2
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.4e-148 530.4 442 64.3
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.8e-148 530.0 504 59.3
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.4e-148 529.6 471 64.8
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.9e-146 522.7 498 59.2
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.1e-144 516.5 286 88.1
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 6.1e-144 515.0 279 88.9
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 4.6e-136 488.8 331 71.9
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.8e-135 486.9 453 59.2
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.3e-135 486.5 461 57.0
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.5e-131 473.8 425 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.0e-131 473.4 327 70.6
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.4e-131 472.6 578 52.1
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.3e-130 470.7 420 63.8
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.2e-129 466.1 333 71.5
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.7e-126 454.5 446 59.4
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.2e-125 451.4 356 65.7
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.3e-124 448.7 475 56.8
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 2.1e-120 436.8 270 74.8
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.3e-118 429.5 439 57.4
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.1e-108 396.0 387 57.4
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.8e-103 380.6 286 69.2
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 4.9e-101 372.5 345 56.2
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.0e-98 364.8 334 56.9
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.6e-80 304.3 468 42.7
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 3.4e-78 296.6 257 58.8
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.7e-69 266.5 478 42.7
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 9.0e-55 218.8 385 37.4
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.9e-44 184.5 251 47.4
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.3e-39 166.4 421 33.5
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 4.2e-36 156.8 120 68.3
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.6e-30 136.0 198 49.0
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 3.8e-29 133.7 128 56.2
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.2e-28 130.2 81 77.8
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.0e-21 109.0 199 38.2
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.1e-20 105.5 102 55.9
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.1e-20 105.5 112 51.8
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 3.2e-20 104.0 213 41.8
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 4.7e-11 73.6 186 34.4
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 3.7e-08 63.9 202 26.2
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 3.7e-08 63.9 202 26.2
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 3.7e-08 63.9 202 26.2
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 8.2e-08 62.8 195 26.7
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 8.2e-08 62.8 288 25.0
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 5.3e-07 60.1 288 24.3
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 7.0e-07 59.7 202 24.3
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 7.0e-07 59.7 288 25.0
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 3.5e-06 57.4 202 24.3
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 4.5e-06 57.0 202 26.7
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 4.5e-06 57.0 53 47.2
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 4.5e-06 57.0 202 24.3


User provided reference genes

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