Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.8e-163 578.6 299 100.0
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 5.9e-84 315.1 305 59.3
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.3e-78 297.4 302 58.6
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.8e-70 268.9 316 51.6
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.0e-67 261.2 299 52.8
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.5e-66 256.5 301 52.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.1e-65 253.4 251 59.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.6e-65 252.7 295 50.2
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.0e-64 249.2 293 53.9
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 8.8e-64 248.1 296 52.4
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 3.7e-62 242.7 293 48.8
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 6.3e-62 241.9 293 48.5
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 8.2e-62 241.5 296 51.4
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 8.2e-62 241.5 295 51.9
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.8e-61 240.4 306 50.7
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 3.1e-61 239.6 297 49.2
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 9.1e-61 238.0 295 51.2
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.5e-60 236.1 293 52.2
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.1e-58 231.1 270 51.9
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.2e-58 228.4 286 49.7
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 9.4e-58 228.0 294 48.6
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.1e-57 226.9 281 51.6
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 2.7e-57 226.5 286 49.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.7e-57 226.5 286 49.3
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 3.6e-57 226.1 298 47.7
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.8e-56 223.8 358 41.3
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 4.0e-56 222.6 287 48.1
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.0e-56 222.6 286 49.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 5.2e-56 222.2 291 45.4
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.2e-56 222.2 300 46.7
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 5.2e-56 222.2 292 45.9
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.8e-56 221.9 284 48.9
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.2e-55 221.1 286 49.3
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.5e-55 220.7 285 48.4
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 7.5e-55 218.4 303 45.2
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 9.8e-55 218.0 298 47.0
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.3e-54 217.6 291 45.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.3e-54 217.6 291 45.0
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.7e-54 217.2 287 48.4
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 2.2e-54 216.9 288 47.6
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 2.8e-54 216.5 293 45.7
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 3.7e-54 216.1 303 45.9
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.4e-53 214.2 303 45.5
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 4.1e-53 212.6 247 51.0
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 7.0e-53 211.8 308 44.5
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 9.1e-53 211.5 290 44.8
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.2e-52 211.1 301 46.2
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 2.0e-52 210.3 306 44.4
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 2.0e-52 210.3 289 45.7
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 3.5e-52 209.5 290 46.9
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.5e-52 209.1 295 47.5
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 4.5e-52 209.1 256 50.8
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.5e-52 209.1 281 47.7
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 1.7e-51 207.2 296 46.3
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.3e-51 206.8 193 60.1
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 5.0e-51 205.7 295 45.1
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-50 204.5 236 52.5
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.5e-50 204.1 258 46.1
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.9e-50 203.8 291 46.0
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.5e-50 203.4 302 44.0
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.2e-49 201.1 341 40.2
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.6e-49 200.7 258 45.7
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.6e-49 199.5 288 43.8
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 4.7e-49 199.1 289 43.9
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 6.1e-49 198.7 273 45.1
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 6.1e-49 198.7 291 45.0
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 8.0e-49 198.4 289 45.7
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.8e-48 197.2 288 44.1
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.3e-48 196.8 283 44.9
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 2.3e-48 196.8 279 46.2
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 6.8e-48 195.3 288 42.4
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.5e-47 194.1 292 44.2
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 2.6e-47 193.4 297 43.1
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.4e-47 193.0 288 42.4
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.8e-46 189.9 298 40.9
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 4.9e-46 189.1 289 41.2
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 6.3e-46 188.7 289 41.9
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 3.1e-45 186.4 273 45.4
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 4.1e-45 186.0 272 43.4
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.6e-44 184.1 278 41.4
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.5e-44 182.6 310 39.0
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 7.8e-44 181.8 272 42.6
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.0e-43 181.4 298 42.3
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 5.0e-43 179.1 285 41.1
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.1e-42 177.9 275 43.3
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.9e-42 177.2 286 43.7
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 4.7e-41 172.6 292 41.8
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 6.1e-41 172.2 273 39.2
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 2.0e-39 167.2 331 39.0
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 3.4e-39 166.4 249 45.0
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.7e-38 162.9 191 51.8
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 6.4e-38 162.2 311 40.8
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 7.0e-37 158.7 295 38.3
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 9.2e-37 158.3 272 38.6
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.7e-36 156.8 311 40.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 6.0e-36 155.6 294 38.4
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.7e-35 154.1 320 36.9
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 3.0e-35 153.3 299 37.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.2e-31 141.4 251 39.8
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 4.9e-30 136.0 266 36.8
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.9e-29 134.0 263 36.5
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.4e-29 133.7 265 40.0
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 3.2e-29 133.3 305 34.1
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 5.4e-29 132.5 317 33.1
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.6e-27 125.6 303 35.0
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.6e-27 125.6 252 37.7
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.1e-26 124.8 274 36.1
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 4.3e-26 122.9 256 37.5
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.1e-25 120.6 250 36.8
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.8e-25 120.2 136 49.3
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 4.7e-25 119.4 196 42.9
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 6.2e-25 119.0 249 36.1
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 8.1e-25 118.6 286 33.2
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.4e-24 117.9 246 38.6
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.4e-24 117.9 246 38.6
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.8e-24 117.5 138 47.8
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.1e-24 116.7 120 55.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.0e-24 116.3 117 54.7
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.2e-24 115.9 269 33.8
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.5e-23 114.4 118 51.7
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.0e-23 114.0 242 34.3
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 5.8e-23 112.5 117 53.0
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 5.8e-23 112.5 197 39.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 9.9e-23 111.7 245 35.1
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 4.9e-22 109.4 248 32.7
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 4.9e-22 109.4 248 32.7
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 6.4e-22 109.0 253 34.8
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.1e-21 106.3 284 32.4
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 5.4e-21 105.9 101 51.5
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.2e-20 104.8 254 34.6
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.7e-19 100.9 220 35.5
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 3.0e-19 100.1 243 35.4
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 6.6e-19 99.0 269 32.3
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.1e-18 98.2 184 40.2
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 3.3e-18 96.7 276 31.2
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.6e-17 94.4 136 41.9
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.1e-16 90.1 242 34.3
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 5.2e-16 89.4 137 37.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.9e-10 70.9 82 41.5
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 3.3e-10 70.1 98 42.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 6.2e-09 65.9 151 32.5
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.4e-08 63.9 51 62.7


User provided reference genes

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