Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 0.0e+00 1776.5 916 100.0
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 0.0e+00 1265.0 915 70.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 0.0e+00 1198.7 919 67.2
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1152.5 920 63.9
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 0.0e+00 1134.8 918 63.8
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 0.0e+00 1118.6 918 63.1
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 0.0e+00 1115.5 915 62.7
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 0.0e+00 1106.7 924 61.9
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 0.0e+00 1106.7 924 60.7
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 0.0e+00 1100.5 924 60.5
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 0.0e+00 1077.0 919 61.2
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 4.4e-311 1071.2 923 59.6
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 1.3e-310 1069.7 810 65.9
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.3e-309 1065.4 921 59.2
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.5e-308 1062.8 920 60.8
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 2.6e-308 1062.0 919 60.1
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 4.9e-307 1057.7 920 60.7
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.4e-306 1055.4 923 59.5
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.7e-304 1049.3 921 61.1
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.1e-302 1042.3 910 58.9
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.0e-300 1035.8 925 59.5
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.6e-300 1035.4 917 58.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 9.9e-300 1033.5 932 59.9
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 4.9e-299 1031.2 919 58.2
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 4.9e-299 1031.2 918 58.4
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 9.3e-298 1026.9 907 60.0
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 2.7e-297 1025.4 917 58.2
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.5e-295 1019.6 937 57.4
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.9e-295 1019.2 923 57.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 4.3e-295 1018.1 916 57.0
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 7.3e-295 1017.3 923 57.6
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.6e-295 1016.9 916 57.0
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.4e-293 1013.1 896 59.7
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.8e-293 1012.7 917 58.0
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 9.0e-293 1010.4 916 58.7
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.2e-292 1010.0 906 57.6
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.2e-291 1005.7 916 56.9
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 2.2e-291 1005.7 920 58.0
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.8e-291 1005.0 916 56.8
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 4.9e-291 1004.6 896 60.2
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 5.4e-290 1001.1 946 55.9
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 9.3e-290 1000.3 921 56.6
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.5e-289 998.4 930 57.7
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 6.2e-286 987.6 917 56.4
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 8.1e-286 987.3 896 58.7
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 6.9e-285 984.2 918 57.0
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.4e-284 981.9 917 55.5
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 3.8e-283 978.4 881 56.4
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.4e-282 976.5 894 58.8
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.9e-282 976.1 899 57.4
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.8e-280 969.5 920 55.8
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 9.6e-279 963.8 924 54.7
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.6e-278 963.0 916 55.3
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.7e-275 953.0 928 55.7
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.9e-274 949.5 918 54.5
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 7.9e-273 944.1 916 54.1
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.9e-272 941.8 916 54.3
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 4.1e-269 931.8 821 60.9
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 5.0e-267 924.9 924 53.9
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 3.6e-265 918.7 926 53.2
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 6.1e-265 917.9 994 50.5
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.7e-262 909.8 922 54.1
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.8e-262 909.1 1339 42.0
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 4.5e-260 901.7 948 51.6
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 2.2e-259 899.4 916 52.1
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 2.5e-258 896.0 943 52.1
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 7.2e-258 894.4 958 52.0
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 6.1e-257 891.3 878 54.4
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 3.0e-256 889.0 902 51.7
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.3e-251 873.6 916 54.5
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 2.5e-242 842.8 909 52.1
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.4e-242 840.9 937 50.6
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 3.0e-240 835.9 931 50.3
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 9.8e-239 830.9 899 50.5
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.9e-236 821.6 887 49.0
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 4.2e-234 815.5 926 47.5
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.2e-233 813.9 901 47.2
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.0e-233 811.2 893 48.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 9.8e-231 804.3 929 48.9
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.8e-230 802.7 929 48.8
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 4.9e-222 775.4 893 47.3
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 4.1e-221 772.3 1371 38.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.1e-221 772.3 913 48.1
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.1e-218 764.2 908 47.6
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 9.5e-218 761.1 806 51.9
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.6e-217 760.4 919 47.7
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 2.4e-213 746.5 879 48.6
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.9e-211 739.2 915 47.7
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.4e-205 720.7 713 54.3
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.9e-205 720.3 929 45.1
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.7e-203 713.8 903 44.2
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.7e-203 713.8 903 44.2
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 6.2e-201 705.3 903 43.6
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 8.1e-201 704.9 903 43.6
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 8.1e-201 704.9 903 43.5
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 2.3e-200 703.4 899 44.0
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.5e-199 700.7 899 44.4
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 2.0e-199 700.3 899 43.8
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 2.6e-199 699.9 911 43.6
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 3.4e-199 699.5 909 43.3
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.1e-197 694.5 902 43.5
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 9.2e-197 691.4 924 43.4
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.3e-195 687.6 938 43.3
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.3e-195 686.8 899 43.5
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 1.7e-187 660.6 911 41.9
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.9e-187 659.4 900 42.2
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 3.6e-185 652.9 916 41.3
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.4e-181 640.2 572 58.9
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 7.9e-180 635.2 936 41.3
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 5.1e-179 632.5 908 42.4
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 5.3e-176 622.5 573 58.1
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.3e-171 607.1 412 73.8
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.1e-170 604.7 466 63.7
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.0e-167 594.0 913 40.1
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.2e-159 568.2 398 72.1
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 3.3e-138 496.9 697 43.2
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.3e-131 474.2 335 69.0
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 2.2e-126 457.6 308 70.8
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 1.5e-122 444.9 374 58.3
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 8.5e-118 429.1 456 49.8
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.2e-115 419.9 432 49.5
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 7.0e-112 409.5 308 64.6
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.0e-111 407.9 392 56.6
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.9e-109 401.4 845 32.2
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 7.3e-109 399.4 404 53.2
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 9.5e-109 399.1 373 57.6
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 8.0e-108 396.0 857 32.9
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.4e-107 395.2 363 55.1
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 3.4e-106 390.6 1160 27.5
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 9.8e-106 389.0 395 53.4
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.1e-101 375.6 473 45.0
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 8.3e-97 359.4 419 48.0
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.5e-90 338.6 271 61.6
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.9e-85 321.6 526 36.9
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.4e-83 315.5 678 32.3
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 8.1e-76 289.7 350 46.6
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 8.9e-75 286.2 196 66.8
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 4.2e-72 277.3 244 55.7
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.3e-70 272.3 273 56.0
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-68 265.4 553 32.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 5.3e-67 260.4 279 49.8
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.1e-64 252.7 179 67.0
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.8e-60 238.0 325 40.9
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 5.8e-58 230.3 173 69.4
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.2e-55 222.6 470 35.5
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.1e-51 209.5 326 37.7
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.6e-47 195.7 139 66.2
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.3e-46 191.8 401 32.7
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 8.2e-44 183.3 160 56.9
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 2.2e-41 175.3 136 62.5
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 5.5e-40 170.6 194 50.0
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 7.2e-40 170.2 146 56.2
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.3e-38 166.0 119 64.7
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 3.9e-38 164.5 209 48.3
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-35 156.4 175 50.9
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 1.8e-35 155.6 151 54.3
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 5.9e-34 150.6 100 69.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.0e-33 149.8 89 79.8
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.7e-33 149.1 286 33.2
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.5e-32 145.2 203 44.8
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 3.2e-32 144.8 90 70.0
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 3.6e-31 141.4 129 58.1
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.5e-29 136.0 84 73.8
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.1e-27 129.8 81 71.6
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.8e-27 129.0 80 76.2
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 9.1e-27 126.7 133 48.1
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 4.5e-26 124.4 122 56.6
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.3e-25 122.9 93 59.1
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.8e-25 121.3 125 52.8
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 1.1e-19 103.2 168 38.1
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 1.4e-19 102.8 106 50.0
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.9e-17 95.1 102 43.1
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 5.5e-16 90.9 1010 21.6
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 9.4e-16 90.1 96 45.8
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.2e-13 83.2 59 62.7
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 1.5e-13 82.8 84 53.6
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 3.7e-12 78.2 48 72.9
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 6.3e-12 77.4 60 65.0
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 2.7e-10 72.0 100 41.0
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 4.5e-10 71.2 49 65.3
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 2.9e-09 68.6 77 53.2
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 9.4e-08 63.5 57 47.4
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 2.1e-07 62.4 80 37.5
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 1.0e-06 60.1 71 50.7
Lj9A422T77 Lonicera japonica HOM05D003469 ORTHO05D004084 1.8e-06 59.3 32 78.1
Pp3c11_22970 Physcomitrium patens HOM05D003301 ORTHO05D003665 6.8e-06 57.4 160 23.1


User provided reference genes

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