Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.2e-36 156.0 76 100.0
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.2e-33 146.0 75 93.3
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.7e-33 144.8 75 92.0
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 2.7e-33 144.8 75 92.0
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 4.6e-33 144.1 75 90.7
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 6.0e-33 143.7 75 92.0
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 89.3
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 92.0
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 92.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 92.0
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 90.7
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 90.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 90.7
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 89.3
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 92.0
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 92.0
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 7.8e-33 143.3 75 89.3
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.0e-32 142.9 75 89.3
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.3e-32 142.5 75 89.3
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.3e-32 142.5 75 90.7
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.3e-32 142.5 75 90.7
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.3e-32 142.5 75 90.7
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.7e-32 142.1 75 90.7
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.7e-32 142.1 75 90.7
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.7e-32 142.1 75 90.7
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.3e-32 141.7 75 89.3
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.3e-32 141.7 75 88.0
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 2.3e-32 141.7 75 89.3
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 3.0e-32 141.4 75 88.0
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 3.0e-32 141.4 75 90.7
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 3.0e-32 141.4 75 90.7
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 3.0e-32 141.4 75 88.0
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 3.0e-32 141.4 75 89.3
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 3.9e-32 141.0 75 90.7
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 3.9e-32 141.0 75 90.7
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 3.9e-32 141.0 75 90.7
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 3.9e-32 141.0 75 89.3
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 3.9e-32 141.0 75 89.3
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 3.9e-32 141.0 75 89.3
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.9e-32 141.0 75 90.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 5.0e-32 140.6 75 89.3
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 5.0e-32 140.6 75 90.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 6.6e-32 140.2 75 88.0
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 8.6e-32 139.8 75 88.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 8.6e-32 139.8 75 88.0
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 8.6e-32 139.8 75 88.0
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 8.6e-32 139.8 75 88.0
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.1e-31 139.4 75 85.3
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.1e-31 139.4 75 85.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.1e-31 139.4 75 88.0
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.1e-31 139.4 75 88.0
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.1e-31 139.4 75 88.0
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.1e-31 139.4 75 88.0
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.5e-31 139.0 75 88.0
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.5e-31 139.0 75 89.3
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.5e-31 139.0 75 88.0
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.5e-31 139.0 75 86.7
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.5e-31 139.0 75 88.0
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.5e-31 139.0 75 85.3
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.9e-31 138.7 75 88.0
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 86.7
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 86.7
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 86.7
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 86.7
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 86.7
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 84.0
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 86.7
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 86.7
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 88.0
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 88.0
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.5e-31 138.3 75 88.0
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.3e-31 137.9 75 88.0
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.3e-31 137.9 75 86.7
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 5.6e-31 137.1 75 86.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 5.6e-31 137.1 75 85.3
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 7.3e-31 136.7 75 85.3
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 7.3e-31 136.7 75 86.7
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 9.5e-31 136.3 75 85.3
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 9.5e-31 136.3 75 85.3
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 9.5e-31 136.3 75 85.3
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 9.5e-31 136.3 75 85.3
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 9.5e-31 136.3 75 86.7
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.2e-30 136.0 75 85.3
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.2e-30 136.0 75 85.3
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.2e-30 136.0 75 85.3
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.6e-30 135.6 75 85.3
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-30 135.6 75 86.7
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.6e-30 135.6 75 84.0
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.6e-30 135.6 75 82.7
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.6e-30 135.6 75 82.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.1e-30 135.2 75 85.3
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.1e-30 135.2 75 88.0
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.6e-30 134.4 75 84.0
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 3.6e-30 134.4 75 81.3
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 4.7e-30 134.0 75 85.3
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.7e-30 134.0 75 84.0
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 6.2e-30 133.7 75 85.3
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 6.2e-30 133.7 75 85.3
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 8.0e-30 133.3 87 78.2
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.4e-29 132.5 75 82.7
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 3.1e-29 131.3 77 83.1
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.2e-29 130.6 75 81.3
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 8.9e-29 129.8 80 80.0
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.5e-28 129.0 83 77.1
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.5e-28 129.0 75 80.0
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.5e-28 129.0 75 82.7
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.5e-28 129.0 75 78.7
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.6e-28 128.3 90 72.2
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 5.8e-28 127.1 75 77.3
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 9.8e-28 126.3 75 77.3
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.7e-27 125.6 75 76.0
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.8e-25 116.7 75 73.3
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.0e-24 116.3 75 70.7
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.7e-24 115.5 75 72.0
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.1e-23 112.8 67 79.1
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 7.3e-23 110.2 61 83.6
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 2.8e-22 108.2 60 85.0
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.0e-20 102.1 65 80.0
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-18 95.5 53 83.0
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 7.1e-18 93.6 81 56.8
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.2e-17 92.8 48 89.6
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 7.8e-17 90.1 77 64.9
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.8e-14 81.6 65 64.6
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 3.6e-14 81.3 65 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 9.6e-07 56.6 75 44.0


User provided reference genes

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