Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.6e-106 388.3 197 100.0
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.8e-88 327.8 202 87.6
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 4.4e-72 275.0 203 72.4
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 9.9e-72 273.9 204 73.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 5.1e-68 261.5 203 70.9
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 4.3e-67 258.5 203 70.4
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.4e-65 252.7 204 68.1
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.1e-62 243.8 203 65.0
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 3.2e-62 242.3 203 64.5
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-60 236.9 203 63.1
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 2.3e-60 236.1 204 63.2
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 1.3e-58 230.3 203 62.1
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.6e-58 229.9 214 61.7
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 8.1e-58 227.6 204 62.3
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 2.4e-57 226.1 204 62.3
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 3.1e-57 225.7 203 61.6
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 4.0e-57 225.3 204 62.7
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 6.9e-57 224.6 204 62.3
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 6.9e-57 224.6 204 62.3
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 6.9e-57 224.6 204 60.8
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 9.0e-57 224.2 205 62.0
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.2e-56 223.8 205 62.0
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.2e-56 223.8 204 62.3
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 5.8e-56 221.5 203 60.1
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 9.9e-56 220.7 205 61.5
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 1.3e-55 220.3 204 60.8
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 2.9e-55 219.2 204 59.3
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 8.4e-55 217.6 188 66.5
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.9e-54 216.5 212 59.4
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 5.4e-54 214.9 213 56.8
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 5.4e-54 214.9 204 59.3
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.6e-53 213.4 204 56.9
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.3e-52 210.3 204 58.3
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.9e-52 208.8 204 57.8
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 3.9e-52 208.8 208 56.7
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 5.1e-52 208.4 205 59.0
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 1.1e-51 207.2 208 55.8
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.5e-51 206.8 205 58.0
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.3e-51 205.7 203 59.1
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 3.3e-51 205.7 208 55.3
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 3.3e-51 205.7 205 55.6
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 4.3e-51 205.3 208 54.8
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 4.3e-51 205.3 208 54.8
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.1e-50 203.0 214 54.2
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.8e-50 202.6 203 57.6
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.4e-49 199.5 196 56.6
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.4e-49 199.5 205 54.1
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 6.9e-49 198.0 205 53.7
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 9.0e-49 197.6 205 53.7
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 9.0e-49 197.6 203 54.2
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.6e-48 196.1 205 53.2
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 7.6e-48 194.5 205 53.7
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.0e-47 194.1 205 52.7
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.0e-47 194.1 211 52.6
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.0e-47 194.1 199 54.3
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 1.0e-47 194.1 178 60.1
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.3e-47 193.7 205 53.7
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.7e-47 193.4 205 54.6
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 2.2e-47 193.0 211 52.6
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 3.8e-47 192.2 211 51.7
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 3.8e-47 192.2 205 53.2
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 6.5e-47 191.4 203 56.2
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 8.4e-47 191.0 205 52.2
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.4e-46 190.3 170 60.6
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.9e-46 189.9 205 51.7
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 3.2e-46 189.1 205 51.2
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 4.2e-46 188.7 213 51.6
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 5.5e-46 188.3 205 51.2
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 5.5e-46 188.3 205 51.2
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 5.5e-46 188.3 212 51.4
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 9.3e-46 187.6 205 50.7
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.6e-45 186.8 212 52.4
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.1e-45 186.4 208 51.4
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.1e-45 186.4 212 51.4
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 2.7e-45 186.0 209 49.8
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 4.6e-45 185.3 212 51.4
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 6.0e-45 184.9 222 49.1
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 6.0e-45 184.9 211 51.7
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.3e-44 183.7 165 61.2
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.3e-44 183.0 208 51.4
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 8.7e-44 181.0 208 50.5
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.9e-43 179.9 205 49.3
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 3.3e-43 179.1 251 44.2
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.3e-43 179.1 164 56.7
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 3.3e-43 179.1 173 57.2
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 7.4e-43 177.9 212 47.6
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 9.6e-43 177.6 206 50.0
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 9.6e-43 177.6 170 58.8
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 2.8e-42 176.0 217 51.6
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 6.9e-41 171.4 199 49.7
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 1.5e-40 170.2 199 50.8
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 2.0e-40 169.9 189 50.3
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.0e-40 169.9 172 57.0
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 5.8e-40 168.3 210 48.6
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 7.6e-40 167.9 205 47.8
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 1.0e-39 167.5 198 47.5
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.7e-39 166.8 176 54.5
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.9e-39 166.0 179 55.9
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.1e-38 164.1 145 64.1
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 3.2e-38 162.5 145 64.1
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 1.2e-37 160.6 204 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 3.5e-37 159.1 204 44.1
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.6e-37 158.7 230 44.8
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.0e-36 157.5 118 65.3
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 5.1e-36 155.2 211 46.4
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 8.7e-36 154.5 131 62.6
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.5e-35 153.7 206 46.1
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.9e-35 153.3 201 49.8
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.8e-33 146.7 132 64.4
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 5.3e-33 145.2 336 33.3
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 2.0e-32 143.3 131 62.6
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.0e-31 138.7 143 52.4
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.5e-31 138.3 234 40.2
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.5e-30 136.3 237 41.4
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 4.2e-30 135.6 138 54.3
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 7.9e-29 131.3 200 39.0
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 9.7e-27 124.4 153 51.0
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 5.3e-25 118.6 144 54.9
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 3.4e-24 115.9 162 45.1
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 7.2e-22 108.2 87 65.5
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 7.2e-22 108.2 109 58.7
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.8e-20 103.6 80 66.2
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.3e-20 103.2 135 45.9
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 8.8e-20 101.3 108 54.6
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.1e-19 100.9 208 34.1
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 3.3e-19 99.4 114 50.0
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 1.3e-18 97.4 99 53.5
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.6e-16 89.7 64 73.4
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.7e-16 88.2 172 39.0
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 4.2e-14 82.4 162 33.3
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 7.2e-14 81.6 84 57.1
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.6e-13 80.5 59 69.5
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 6.1e-13 78.6 145 37.9
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 8.8e-12 74.7 58 67.2
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.0e-11 73.6 91 52.7
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 3.1e-09 66.2 88 42.0
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 3.8e-07 59.3 45 64.4
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 1.5e-06 57.4 215 23.3
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.5e-06 56.6 63 46.0
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 7.2e-06 55.1 49 46.9


User provided reference genes

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