Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 2.2e-27 124.8 59 100.0
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 1.2e-17 92.4 58 81.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 3.6e-17 90.9 56 82.1
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 4.6e-17 90.5 58 79.3
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 6.1e-17 90.1 58 79.3
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 7.9e-17 89.7 58 79.3
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 1.4e-16 89.0 62 74.2
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 1.4e-16 89.0 58 77.6
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 1.4e-16 89.0 58 77.6
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 1.8e-16 88.6 62 72.6
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 1.8e-16 88.6 58 77.6
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 1.8e-16 88.6 58 77.6
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 1.8e-16 88.6 58 77.6
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 2.3e-16 88.2 58 77.6
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 2.3e-16 88.2 58 77.6
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 2.3e-16 88.2 59 76.3
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 3.0e-16 87.8 58 79.3
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 3.0e-16 87.8 58 75.9
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 3.0e-16 87.8 58 77.6
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 3.0e-16 87.8 58 75.9
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 3.0e-16 87.8 58 77.6
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.9e-16 87.4 58 75.9
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 3.9e-16 87.4 58 75.9
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 3.9e-16 87.4 58 77.6
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 3.9e-16 87.4 58 77.6
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 3.9e-16 87.4 58 75.9
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 3.9e-16 87.4 59 72.9
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 3.9e-16 87.4 59 72.9
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 5.1e-16 87.0 58 75.9
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 5.1e-16 87.0 58 77.6
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 5.1e-16 87.0 58 75.9
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 5.1e-16 87.0 58 74.1
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 6.7e-16 86.7 58 75.9
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 6.7e-16 86.7 58 75.9
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 6.7e-16 86.7 58 75.9
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 6.7e-16 86.7 58 75.9
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 1.1e-15 85.9 58 75.9
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 1.1e-15 85.9 58 75.9
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.1e-15 85.9 56 78.6
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 1.5e-15 85.5 58 74.1
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.9e-15 85.1 56 78.6
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.9e-15 85.1 58 74.1
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 1.9e-15 85.1 58 74.1
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.9e-15 85.1 64 68.8
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 1.9e-15 85.1 58 75.9
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 1.9e-15 85.1 58 74.1
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 2.5e-15 84.7 58 75.9
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 2.5e-15 84.7 58 74.1
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 3.3e-15 84.3 58 72.4
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 3.3e-15 84.3 56 76.8
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 3.3e-15 84.3 58 75.9
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 4.3e-15 84.0 58 72.4
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 4.3e-15 84.0 58 74.1
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 5.7e-15 83.6 58 74.1
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 7.4e-15 83.2 58 72.4
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 7.4e-15 83.2 73 61.6
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 9.7e-15 82.8 58 74.1
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 1.3e-14 82.4 54 75.9
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.3e-14 82.4 56 78.6
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 2.8e-14 81.3 74 59.5
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 3.7e-14 80.9 58 70.7
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 4.8e-14 80.5 58 70.7
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 4.8e-14 80.5 57 75.4
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.8e-14 80.5 74 58.1
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 6.3e-14 80.1 56 71.4
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 8.2e-14 79.7 58 69.0
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 8.2e-14 79.7 58 69.0
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 8.2e-14 79.7 58 72.4
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 1.1e-13 79.3 56 75.0
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 1.1e-13 79.3 55 72.7
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 1.8e-13 78.6 58 69.0
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 2.4e-13 78.2 58 63.8
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 5.3e-13 77.0 58 69.0
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 1.2e-12 75.9 56 73.2
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.6e-12 74.7 58 62.1
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 5.9e-12 73.6 58 69.0
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 2.9e-11 71.2 63 63.5
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 8.5e-11 69.7 97 44.3
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 9.4e-10 66.2 58 62.1
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 1.6e-09 65.5 58 60.3
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 9.7e-07 56.2 81 44.4
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 9.7e-07 56.2 58 55.2
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.7e-06 55.5 57 50.9
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 2.8e-06 54.7 55 54.5
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 2.8e-06 54.7 58 53.4
GSVIVG01034772001 Vitis vinifera HOM05D003492 ORTHO05D035223 4.8e-06 53.9 28 89.3


User provided reference genes

Program Settings