Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034260001 Vitis vinifera HOM05D001477 ORTHO05D001182 7.0e-109 397.5 232 100.0
GSVIVG01016837001 Vitis vinifera HOM05D001477 ORTHO05D001182 6.0e-60 235.0 231 69.7
GSVIVG01016843001 Vitis vinifera HOM05D001477 ORTHO05D001182 1.3e-54 217.2 212 58.0
GSVIVG01016826001 Vitis vinifera HOM05D000051 ORTHO05D001182 1.1e-48 197.6 126 81.7
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 5.7e-18 95.5 198 36.4
QL05p016344 Quercus lobata HOM05D001477 ORTHO05D001182 5.7e-18 95.5 212 31.6
Cfa003613 Carpinus fangiana HOM05D001477 ORTHO05D001182 4.8e-17 92.4 196 34.7
QL05p018582 Quercus lobata HOM05D001477 ORTHO05D001182 3.1e-16 89.7 195 32.8
QL93p1866_0198 Quercus lobata HOM05D001477 ORTHO05D001182 3.1e-16 89.7 195 32.8
Ca_01177_v3 Cicer arietinum L. HOM05D001477 ORTHO05D001182 1.2e-15 87.8 229 28.8
FvH4_6g32840 Fragaria vesca HOM05D001477 ORTHO05D001182 1.5e-15 87.4 213 30.0
FAN14G2250 Fragaria x ananassa HOM05D000862 ORTHO05D000943 3.4e-15 86.3 213 29.6
Manes.11G029400 Manihot esculenta HOM05D001477 ORTHO05D001182 3.4e-15 86.3 195 29.2
FAN05G3307 Fragaria x ananassa HOM05D000862 ORTHO05D000943 5.9e-15 85.5 214 29.9
RcHm_v2.0_Chr2g0142131 Rosa chinensis HOM05D001477 ORTHO05D001182 7.7e-15 85.1 195 29.7
CiPaw.01G227900 Carya illinoinensis HOM05D001477 ORTHO05D001182 1.7e-14 84.0 202 31.2
Psat5g295000 Pisum sativum HOM05D001477 ORTHO05D001182 1.7e-14 84.0 124 36.3
Dinv37940 Davidia involucrata HOM05D001477 ORTHO05D001182 2.9e-14 83.2 196 31.1
Medtr2g100590 Medicago truncatula HOM05D001477 ORTHO05D001182 1.1e-13 81.3 204 29.9
Prupe.3G053600 Prunus persica HOM05D001477 ORTHO05D001182 1.9e-13 80.5 174 34.5
TPR.G6557 Trifolium pratense HOM05D001477 ORTHO05D001182 1.9e-13 80.5 203 30.5
FAN02G0832 Fragaria x ananassa HOM05D000862 ORTHO05D001182 2.5e-13 80.1 149 35.6
FAN02G0884 Fragaria x ananassa HOM05D001477 ORTHO05D001182 2.5e-13 80.1 149 35.6
MD09G1197600 Malus domestica HOM05D001477 ORTHO05D001182 3.2e-13 79.7 202 30.2
MD17G1178500 Malus domestica HOM05D001477 ORTHO05D001182 2.1e-12 77.0 195 31.3
Actinidia32125 Actinidia chinensis HOM05D000617 ORTHO05D000229 3.6e-12 76.3 198 29.3
Potri.001G395000 Populus trichocarpa HOM05D001477 ORTHO05D001182 7.9e-12 75.1 132 37.1
Medtr2g100570 Medicago truncatula HOM05D001477 ORTHO05D001182 1.4e-11 74.3 152 32.9
Hma1.2p1_0388F.1_g142450 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 3.0e-11 73.2 134 32.8
arahy.Tifrunner.gnm1.ann1.Q9TM1C Arachis hypogaea HOM05D000862 ORTHO05D000943 6.7e-11 72.0 229 25.8
QL01p017794 Quercus lobata HOM05D001477 ORTHO05D001182 6.7e-11 72.0 113 38.1
PSO782G3502 Papaver somniferum HOM05D000051 ORTHO05D000015 2.0e-10 70.5 191 28.3
Haze_00867 Corylus avellana HOM05D001477 ORTHO05D001182 2.6e-10 70.1 197 30.5
TAR627G0813 Trochodendron aralioides HOM05D000421 ORTHO05D001182 2.6e-10 70.1 133 35.3
CSS0009889 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 5.7e-10 68.9 177 29.4
Rhsim08G0230500 Rhododendron simsii HOM05D001477 ORTHO05D001182 5.7e-10 68.9 213 27.2
Rhsim05G0177500 Rhododendron simsii HOM05D002667 ORTHO05D002909 7.4e-10 68.6 181 29.8
arahy.Tifrunner.gnm1.ann1.WE7T8M Arachis hypogaea HOM05D000862 ORTHO05D000943 9.7e-10 68.2 229 25.3
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 3.7e-09 66.2 214 27.1
CSS0038081 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 4.8e-09 65.9 222 27.9
CsaV3_3G044110 Cucumis sativus L. HOM05D001477 ORTHO05D001182 4.8e-09 65.9 194 23.7
Prupe.8G124500 Prunus persica HOM05D006186 ORTHO05D009138 4.8e-09 65.9 134 30.6
QL11p055690 Quercus lobata HOM05D001477 ORTHO05D001182 4.8e-09 65.9 210 27.6
C09p43550 Brassica napus HOM05D000051 ORTHO05D000015 6.3e-09 65.5 136 29.4
EL10Ac3g05730 Beta vulgaris HOM05D001477 ORTHO05D001182 8.2e-09 65.1 133 30.1
vmacro09739 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 8.2e-09 65.1 134 32.8
EL10Ac9g21142 Beta vulgaris HOM05D001477 ORTHO05D001182 1.1e-08 64.7 208 26.9
Haze_18985 Corylus avellana HOM05D001477 ORTHO05D001182 1.1e-08 64.7 110 36.4
Cfa020687 Carpinus fangiana HOM05D001477 ORTHO05D001182 1.4e-08 64.3 161 30.4
Thhalv10016687m.g Eutrema salsugineum HOM05D000689 ORTHO05D000015 1.8e-08 63.9 144 35.4
AT4G00320 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 2.4e-08 63.5 132 31.8
QL05p053661 Quercus lobata HOM05D001477 ORTHO05D001182 2.4e-08 63.5 133 31.6
Prupe.8G124700 Prunus persica HOM05D006186 ORTHO05D009138 3.1e-08 63.2 147 33.3
FAN09G4555 Fragaria x ananassa HOM05D001477 ORTHO05D001182 4.1e-08 62.8 95 38.9
Haze_03787 Corylus avellana HOM05D001477 ORTHO05D001182 5.3e-08 62.4 139 36.0
Dinv39820 Davidia involucrata HOM05D001396 ORTHO05D000493 5.3e-08 62.4 141 31.2
Rhsim02G0017300 Rhododendron simsii HOM05D001477 ORTHO05D001182 7.0e-08 62.0 140 32.1
Cfa015667 Carpinus fangiana HOM05D001477 ORTHO05D001182 9.1e-08 61.6 195 28.7
Ciclev10027156m.g Citrus clementina HOM05D001477 ORTHO05D001182 9.1e-08 61.6 135 31.9
PGR142G1584 Punica granatum HOM05D001477 ORTHO05D001182 9.1e-08 61.6 136 35.3
Ciclev10025305m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.2e-07 61.2 133 36.1
CSS0008598 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.5e-07 60.8 136 30.9
CARHR134010 Cardamine hirsuta HOM05D000689 ORTHO05D000015 1.5e-07 60.8 137 27.7
Ciclev10025241m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.5e-07 60.8 136 33.8
Prupe.3G231800 Prunus persica HOM05D006186 ORTHO05D009138 1.5e-07 60.8 138 31.9
QL04p060682 Quercus lobata HOM05D001477 ORTHO05D001182 1.5e-07 60.8 153 31.4
A10p11070 Brassica napus HOM05D000051 ORTHO05D000015 2.0e-07 60.5 136 27.2
BraA10t43199Z Brassica rapa HOM05D000051 ORTHO05D000015 2.0e-07 60.5 136 27.2
Ciclev10027014m.g Citrus clementina HOM05D001477 ORTHO05D001182 2.0e-07 60.5 130 33.8
Hma1.2p1_1609F.1_g293450 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 2.0e-07 60.5 135 35.6
QL04p060686 Quercus lobata HOM05D001477 ORTHO05D001182 2.0e-07 60.5 140 30.7
Aqoxy6G01501 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 2.6e-07 60.1 133 28.6
ClCG07G013540 Citrullus lanatus HOM05D001477 ORTHO05D001182 2.6e-07 60.1 207 23.7
Ciclev10025322m.g Citrus clementina HOM05D001477 ORTHO05D001182 2.6e-07 60.1 116 34.5
Cc05_g13440 Coffea canephora HOM05D000051 ORTHO05D000015 2.6e-07 60.1 134 32.1
Migut.E00539 Erythranthe guttata HOM05D005930 ORTHO05D003423 2.6e-07 60.1 138 31.2
Sed0010878 Sechium edule HOM05D001477 ORTHO05D001182 2.6e-07 60.1 115 31.3
PGSC0003DMG400003802 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.6e-07 60.1 144 31.9
Thecc.08G187100 Theobroma cacao HOM05D000576 ORTHO05D000368 2.6e-07 60.1 141 31.2
Dinv40730 Davidia involucrata HOM05D000051 ORTHO05D000015 3.4e-07 59.7 134 33.6
Nitab4.5_0000397g0270 Nicotiana tabacum HOM05D000051 ORTHO05D000015 3.4e-07 59.7 130 33.1
QL08p037410 Quercus lobata HOM05D001477 ORTHO05D001182 3.4e-07 59.7 194 27.3
Haze_18899 Corylus avellana HOM05D001477 ORTHO05D001182 4.5e-07 59.3 185 27.6
Dinv38189 Davidia involucrata HOM05D000051 ORTHO05D000015 4.5e-07 59.3 150 33.3
ECA236G0591 Erigeron canadensis HOM05D000051 ORTHO05D000015 4.5e-07 59.3 135 31.9
Medtr3g071850 Medicago truncatula HOM05D000051 ORTHO05D000015 4.5e-07 59.3 99 33.3
Nn1g07075 Nelumbo nucifera HOM05D000051 ORTHO05D000015 4.5e-07 59.3 132 32.6
Prupe.8G124900 Prunus persica HOM05D006186 ORTHO05D009138 4.5e-07 59.3 97 36.1
Sp5g16420 Schrenkiella parvula HOM05D000051 ORTHO05D000015 4.5e-07 59.3 134 29.9
Gorai.005G010600 Gossypium raimondii HOM05D000051 ORTHO05D000015 5.9e-07 58.9 148 34.5
CSS0018246 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 7.7e-07 58.5 134 30.6
Gohir.D02G008900 Gossypium hirsutum HOM05D000051 ORTHO05D000015 7.7e-07 58.5 147 33.3
Prupe.4G159000 Prunus persica HOM05D000051 ORTHO05D000015 7.7e-07 58.5 139 28.1
QL03p032024 Quercus lobata HOM05D001477 ORTHO05D001182 7.7e-07 58.5 93 39.8
VMungo0464G0201 Vigna mungo HOM05D000051 ORTHO05D000015 7.7e-07 58.5 145 29.0
BolC6t38682H Brassica oleracea HOM05D000051 ORTHO05D000015 1.0e-06 58.2 144 29.2
Dinv40414 Davidia involucrata HOM05D001477 ORTHO05D001182 1.0e-06 58.2 157 31.8
Gorai.009G138900 Gossypium raimondii HOM05D001477 ORTHO05D001182 1.0e-06 58.2 62 46.8
Hma1.2p1_1609F.1_g293460 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 1.0e-06 58.2 143 30.8
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.0e-06 58.2 134 31.3
EL10Ac2g04568 Beta vulgaris HOM05D001477 ORTHO05D001182 1.3e-06 57.8 135 30.4
Ciclev10031194m.g Citrus clementina HOM05D001477 ORTHO05D001182 1.3e-06 57.8 150 33.3
Peaxi162Scf00038g01239 Petunia axillaris HOM05D001477 ORTHO05D001182 1.3e-06 57.8 94 33.0
Sp6g15230 Schrenkiella parvula HOM05D000051 ORTHO05D000015 1.3e-06 57.8 119 28.6
SGA_v2.0_scaffold37G14882 Striga asiatica HOM05D005930 ORTHO05D003423 1.3e-06 57.8 150 31.3
Dinv39819 Davidia involucrata HOM05D001396 ORTHO05D000493 1.7e-06 57.4 131 33.6
Medtr6g045333 Medicago truncatula HOM05D000051 ORTHO05D000015 1.7e-06 57.4 97 33.0
Nitab4.5_0011608g0030 Nicotiana tabacum HOM05D000051 ORTHO05D000015 1.7e-06 57.4 130 32.3
QL05p062669 Quercus lobata HOM05D000051 ORTHO05D000015 1.7e-06 57.4 97 30.9
Cpa.g.sc116.79 Carica papaya HOM05D001477 ORTHO05D001182 2.2e-06 57.0 215 27.4
Dinv17490 Davidia involucrata HOM05D000051 ORTHO05D000015 2.2e-06 57.0 144 33.3
Ah.16g101830 Amaranthus hybridus HOM05D000001 ORTHO05D001705 2.9e-06 56.6 135 29.6
COL.COLO4_23029 Corchorus olitorius HOM05D000576 ORTHO05D000368 2.9e-06 56.6 135 31.1
Peaxi162Scf00548g00426 Petunia axillaris HOM05D001396 ORTHO05D000493 2.9e-06 56.6 157 25.5
Rhsim04G0063700 Rhododendron simsii HOM05D001477 ORTHO05D011640 2.9e-06 56.6 116 29.3
Rhsim06G0213900 Rhododendron simsii HOM05D000051 ORTHO05D000015 2.9e-06 56.6 150 29.3
AL7G47410 Arabidopsis lyrata HOM05D000689 ORTHO05D000015 3.8e-06 56.2 132 30.3
Carub.0007s3354 Capsella rubella HOM05D000689 ORTHO05D000015 3.8e-06 56.2 140 30.0
COL.COLO4_23025 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.8e-06 56.2 133 32.3
FAN14G1648 Fragaria x ananassa HOM05D006186 ORTHO05D009138 3.8e-06 56.2 136 30.9
Rhsim07G0244500 Rhododendron simsii HOM05D001477 ORTHO05D011640 3.8e-06 56.2 141 27.0
Atru.chr1.2844 Acer truncatum HOM05D001477 ORTHO05D001182 5.0e-06 55.8 134 31.3
AT5G41830 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 5.0e-06 55.8 131 30.5
EL10Ac3g05729 Beta vulgaris HOM05D001477 ORTHO05D001182 5.0e-06 55.8 129 27.1
BraA03t10831Z Brassica rapa HOM05D000051 ORTHO05D000015 5.0e-06 55.8 113 31.9
Thhalv10000471m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 5.0e-06 55.8 108 35.2
Lj2A441T55 Lonicera japonica HOM05D000051 ORTHO05D000015 5.0e-06 55.8 98 34.7
PGR083G1680 Punica granatum HOM05D001477 ORTHO05D001182 5.0e-06 55.8 132 30.3
RcHm_v2.0_Chr2g0161931 Rosa chinensis HOM05D006186 ORTHO05D009138 5.0e-06 55.8 133 33.8
CAN.G500.48 Capsicum annuum HOM05D006683 ORTHO05D008629 6.5e-06 55.5 175 25.7
CARHR284830 Cardamine hirsuta HOM05D000051 ORTHO05D000015 6.5e-06 55.5 104 31.7
Cpa.g.sc116.90 Carica papaya HOM05D001477 ORTHO05D001182 6.5e-06 55.5 160 30.0
FAN09G3273 Fragaria x ananassa HOM05D006186 ORTHO05D009138 6.5e-06 55.5 136 31.6
Lj1g0014680 Lotus japonicus HOM05D000051 ORTHO05D000015 6.5e-06 55.5 130 28.5
Lj2g0004354 Lotus japonicus HOM05D000051 ORTHO05D000015 6.5e-06 55.5 144 25.7
Nitab4.5_0013834g0010 Nicotiana tabacum HOM05D005268 ORTHO05D000493 6.5e-06 55.5 141 27.7
Hund02112 Selenicereus undatus HOM05D000051 ORTHO05D000015 6.5e-06 55.5 96 33.3
SGA_v2.0_scaffold68G22937 Striga asiatica HOM05D000862 ORTHO05D000943 6.5e-06 55.5 138 26.1
vmacro12263 Vaccinium macrocarpon HOM05D000312 ORTHO05D000493 6.5e-06 55.5 110 30.0
EL10Ac9g21149 Beta vulgaris HOM05D001477 ORTHO05D001182 8.5e-06 55.1 134 33.6
C05p41970 Brassica napus HOM05D000051 ORTHO05D000015 8.5e-06 55.1 149 29.5
BolC5t32931H Brassica oleracea HOM05D000051 ORTHO05D000015 8.5e-06 55.1 149 29.5
DCAR_012983 Daucus carota HOM05D001396 ORTHO05D000493 8.5e-06 55.1 97 32.0
QL05p010063 Quercus lobata HOM05D001477 ORTHO05D001182 8.5e-06 55.1 130 30.0
RcHm_v2.0_Chr6g0257161 Rosa chinensis HOM05D006186 ORTHO05D009138 8.5e-06 55.1 149 28.9


User provided reference genes

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