Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 2.3e-81 305.4 146 100.0
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 5.2e-70 267.7 145 86.9
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.4e-69 264.6 146 87.7
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.4e-69 264.6 146 87.7
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 7.6e-69 263.8 139 90.6
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 9.9e-69 263.5 146 87.7
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 9.9e-69 263.5 146 85.6
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.9e-68 261.9 146 86.3
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 3.8e-68 261.5 146 85.6
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.4e-68 260.8 147 85.0
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 6.4e-68 260.8 146 87.0
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.1e-67 260.0 150 85.3
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.4e-67 259.6 150 84.7
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 2.1e-66 255.8 147 85.0
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.7e-66 255.4 146 82.9
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 6.0e-66 254.2 147 83.0
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 6.0e-66 254.2 145 81.4
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 7.8e-66 253.8 146 82.2
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 1.3e-65 253.1 146 82.2
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.3e-65 253.1 147 83.7
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 1.3e-65 253.1 148 84.5
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.3e-65 253.1 146 81.5
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.7e-65 252.7 147 82.3
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.7e-65 252.7 147 83.7
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 3.0e-65 251.9 146 82.2
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 3.0e-65 251.9 146 81.5
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 5.1e-65 251.1 148 81.8
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 5.1e-65 251.1 147 83.0
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 6.6e-65 250.8 147 81.0
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 6.6e-65 250.8 151 82.8
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 8.7e-65 250.4 141 82.3
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.5e-64 249.6 146 81.5
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.9e-64 249.2 155 78.1
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 2.5e-64 248.8 146 80.8
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 3.3e-64 248.4 147 82.3
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 3.3e-64 248.4 146 82.2
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.3e-64 248.1 146 82.2
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 5.6e-64 247.7 149 80.5
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 5.6e-64 247.7 149 81.2
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.6e-64 247.7 150 78.7
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 7.3e-64 247.3 147 82.3
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 9.6e-64 246.9 146 80.1
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 9.6e-64 246.9 146 81.5
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 9.6e-64 246.9 146 78.8
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 1.6e-63 246.1 141 80.9
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 2.1e-63 245.7 150 80.0
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 2.1e-63 245.7 149 79.2
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.1e-63 245.7 164 73.8
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 3.6e-63 245.0 147 78.9
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 4.8e-63 244.6 146 79.5
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 4.8e-63 244.6 147 78.9
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 4.8e-63 244.6 152 80.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 6.2e-63 244.2 146 80.8
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 6.2e-63 244.2 147 81.0
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.2e-63 244.2 137 83.2
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.1e-62 243.4 145 80.0
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 1.1e-62 243.4 147 78.2
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.1e-62 243.4 147 81.6
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.4e-62 243.0 139 80.6
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 3.1e-62 241.9 149 80.5
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 6.9e-62 240.7 146 79.5
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 6.9e-62 240.7 150 78.7
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 6.9e-62 240.7 148 78.4
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 6.9e-62 240.7 148 78.4
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 1.2e-61 240.0 147 76.9
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.5e-61 239.6 147 80.3
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.5e-61 239.6 146 78.8
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.6e-61 238.8 135 83.0
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 3.4e-61 238.4 147 78.9
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 3.4e-61 238.4 155 75.5
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 3.4e-61 238.4 147 78.9
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 3.4e-61 238.4 146 78.1
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 4.5e-61 238.0 147 78.9
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 4.5e-61 238.0 147 78.2
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 5.8e-61 237.7 146 77.4
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 7.6e-61 237.3 128 84.4
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 9.9e-61 236.9 149 78.5
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 1.3e-60 236.5 147 78.2
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 2.2e-60 235.7 134 82.8
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 2.9e-60 235.3 141 78.7
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 4.9e-60 234.6 141 80.1
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 4.9e-60 234.6 141 80.1
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 6.4e-60 234.2 147 76.9
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 6.4e-60 234.2 141 79.4
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 8.4e-60 233.8 147 78.2
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.1e-59 233.4 146 76.7
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 1.9e-59 232.6 142 78.2
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 4.2e-59 231.5 131 82.4
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 5.4e-59 231.1 146 76.0
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 7.1e-59 230.7 152 76.3
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 6.0e-58 227.6 152 72.4
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 7.9e-58 227.3 146 74.0
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.8e-57 226.1 138 78.3
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.8e-57 226.1 138 78.3
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.3e-57 225.7 138 78.3
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 1.9e-56 222.6 118 83.9
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 2.1e-55 219.2 132 78.0
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 3.7e-55 218.4 144 70.8
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 4.8e-55 218.0 150 72.0
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 8.1e-55 217.2 170 63.5
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 8.1e-55 217.2 170 63.5
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.1e-54 216.9 132 76.5
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 6.9e-54 214.2 125 80.0
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 1.5e-53 213.0 112 83.0
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 3.4e-53 211.8 131 77.1
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 7.6e-53 210.7 154 71.4
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 7.6e-53 210.7 116 80.2
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 2.2e-52 209.1 127 74.0
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.4e-52 207.2 152 72.4
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.4e-51 206.5 172 64.0
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.9e-51 206.1 114 81.6
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.2e-50 203.4 105 86.7
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.1e-50 202.6 156 70.5
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.7e-50 202.2 141 67.4
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.9e-49 198.4 104 83.7
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 5.1e-49 198.0 147 65.3
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.1e-48 196.8 104 82.7
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.5e-48 196.4 118 71.2
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 4.8e-47 191.4 145 67.6
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 9.0e-46 187.2 111 82.0
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 9.0e-46 187.2 134 65.7
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 6.5e-44 181.0 152 64.5
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 6.5e-44 181.0 113 80.5
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 7.1e-43 177.6 91 82.4
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.3e-41 173.3 112 76.8
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 2.2e-39 166.0 96 83.3
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.8e-38 162.9 112 74.1
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 5.3e-38 161.4 100 83.0
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 2.0e-37 159.5 78 85.9
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.5e-29 131.7 146 49.3
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.9e-29 131.3 104 61.5
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 5.0e-28 128.3 86 76.7
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 3.2e-27 125.6 61 85.2
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 1.3e-20 103.6 72 62.5
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 1.3e-20 103.6 309 28.5
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 3.8e-20 102.1 74 79.7
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 4.2e-19 98.6 52 84.6
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 9.7e-16 87.4 57 77.2
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.7e-15 85.5 52 71.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.9e-11 73.2 38 92.1
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.5e-11 71.6 49 69.4
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 7.2e-11 71.2 42 73.8
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.1e-10 69.7 40 72.5
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 8.0e-10 67.8 46 73.9
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.2e-07 59.7 30 76.7


User provided reference genes

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