Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.6e-231 805.8 446 100.0
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 7.2e-187 657.5 441 74.4
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 1.7e-180 636.3 444 72.7
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 3.8e-180 635.2 444 69.8
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 9.4e-179 630.6 437 78.7
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.7e-178 629.0 442 70.6
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.7e-178 629.0 442 70.6
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 6.7e-177 624.4 429 69.9
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 5.7e-176 621.3 435 70.1
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 7.5e-176 620.9 429 71.1
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 1.4e-174 616.7 448 67.9
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 3.5e-173 612.1 445 76.4
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 1.5e-171 606.7 444 74.3
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 7.2e-171 604.4 451 73.4
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 3.6e-170 602.1 440 75.0
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 9.8e-168 594.0 454 66.1
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 2.2e-167 592.8 446 75.8
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 6.3e-167 591.3 437 66.4
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.4e-166 590.1 417 70.0
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.8e-166 589.7 437 66.1
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 9.1e-166 587.4 437 65.9
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 1.9e-163 579.7 446 66.4
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.9e-163 579.7 432 71.3
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 9.5e-163 577.4 444 72.3
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 1.2e-162 577.0 442 64.7
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 1.4e-161 573.5 434 64.1
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.5e-160 570.1 443 69.3
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 2.6e-160 569.3 431 68.9
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 4.4e-160 568.5 429 71.1
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 4.4e-160 568.5 444 70.3
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 1.3e-159 567.0 437 72.8
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 1.7e-159 566.6 446 70.6
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 2.4e-158 562.8 427 65.3
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.6e-157 560.1 437 62.9
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 4.5e-157 558.5 446 70.4
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 5.9e-157 558.1 446 70.6
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.1e-155 553.9 444 68.5
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 9.5e-155 550.8 443 68.4
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 2.8e-154 549.3 446 69.5
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 1.4e-153 547.0 444 69.4
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 2.3e-153 546.2 421 70.1
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 6.8e-153 544.7 442 62.9
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 2.6e-152 542.7 440 68.2
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 1.6e-149 533.5 492 56.7
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 2.7e-149 532.7 434 60.1
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.7e-149 532.7 444 61.3
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 6.6e-148 528.1 441 66.2
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 6.6e-148 528.1 438 66.4
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 5.6e-147 525.0 445 68.5
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 1.6e-146 523.5 443 64.6
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 1.6e-146 523.5 432 66.7
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 4.7e-146 521.9 444 68.2
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 6.8e-145 518.1 446 66.8
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 1.4e-142 510.4 437 67.5
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 1.4e-142 510.4 444 62.8
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 1.9e-142 510.0 353 74.2
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 3.2e-142 509.2 447 59.1
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 1.2e-141 507.3 441 66.2
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 2.1e-141 506.5 397 63.5
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 2.1e-141 506.5 426 68.5
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 4.6e-141 505.4 456 65.6
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 6.0e-141 505.0 446 66.8
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 1.7e-140 503.4 444 67.3
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 2.3e-140 503.1 447 58.6
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.3e-139 499.2 443 66.6
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 2.8e-138 496.1 444 65.5
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 2.3e-137 493.0 444 65.8
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 5.8e-136 488.4 371 70.6
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 7.5e-136 488.0 443 65.7
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 7.5e-136 488.0 429 66.9
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.7e-135 486.9 441 56.2
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.7e-135 486.9 443 65.0
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 4.9e-135 485.3 446 62.3
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 6.4e-135 485.0 430 59.3
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 3.2e-134 482.6 444 60.1
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 4.1e-134 482.3 446 61.4
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 2.7e-133 479.6 444 60.1
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 4.6e-133 478.8 444 59.9
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 1.5e-131 473.8 373 71.3
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 1.9e-131 473.4 439 56.3
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 9.5e-131 471.1 354 64.1
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.1e-129 467.6 444 54.1
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 5.2e-129 465.3 389 67.6
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 6.8e-129 464.9 443 58.9
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 8.4e-127 458.0 442 58.1
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.4e-126 457.2 441 57.8
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 4.2e-126 455.7 441 57.6
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 2.1e-125 453.4 442 59.0
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 6.6e-124 448.4 427 58.5
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 3.3e-123 446.0 411 63.3
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 1.8e-121 440.3 329 68.4
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 3.1e-121 439.5 422 62.3
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 3.5e-117 426.0 422 60.4
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 1.2e-112 411.0 280 70.4
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 2.0e-112 410.2 441 57.1
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 9.9e-112 407.9 316 66.8
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 2.9e-111 406.4 328 60.7
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 2.6e-104 383.3 308 74.0
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 4.9e-103 379.0 248 71.8
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.5e-102 376.7 280 66.4
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 1.3e-90 337.8 259 79.9
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.7e-87 327.4 315 63.2
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 1.4e-86 324.3 326 52.5
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.1e-65 255.0 160 76.2
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 9.1e-65 251.9 412 42.5
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 2.0e-64 250.8 405 41.5
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 6.1e-61 239.2 253 52.6
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.0e-60 238.4 393 43.0
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 6.3e-58 229.2 212 72.6
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 7.7e-56 222.2 394 39.6
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.3e-55 221.5 206 59.2
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 2.2e-55 220.7 393 40.7
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 2.1e-53 214.2 416 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 6.1e-53 212.6 402 41.8
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 3.4e-51 206.8 219 49.3
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 7.2e-46 189.1 119 73.9
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.4e-44 184.9 141 65.2
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 1.6e-40 171.4 114 67.5
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-38 165.2 216 46.3
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 1.6e-37 161.4 111 69.4
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 1.6e-37 161.4 110 70.0
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 5.2e-36 156.4 101 70.3
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 3.7e-34 150.2 198 46.0
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 4.1e-33 146.7 108 66.7
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 1.3e-31 141.7 131 55.0
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 1.2e-27 128.6 112 59.8
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 8.3e-26 122.5 89 66.3
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-17 95.5 59 76.3
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.2e-16 92.0 61 68.9
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 4.6e-16 90.1 66 68.2
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 5.1e-15 86.7 58 70.7
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 4.7e-13 80.1 56 66.1
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 6.2e-13 79.7 66 62.1
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 3.8e-10 70.5 38 86.8
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 1.9e-09 68.2 38 84.2
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 2.4e-09 67.8 38 84.2
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 1.6e-08 65.1 40 80.0
Lsat_1_v5_gn_1_127740 Lactuca sativa HOM05D001044 ORTHO05D008486 1.1e-06 58.9 39 71.8


User provided reference genes

Program Settings