Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 2090.5 1061 100.0
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1528.8 1096 73.9
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1503.4 1096 72.9
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1500.7 1093 73.7
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1478.0 1099 72.2
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1463.4 1071 72.5
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1458.4 1116 70.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1458.0 1098 71.4
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1449.9 1088 72.2
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1442.6 1101 71.1
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1430.6 1085 71.3
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1427.5 1068 71.0
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1421.8 1109 69.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1421.0 1090 70.4
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1418.7 1080 70.2
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1418.7 1082 70.0
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1418.7 1091 70.4
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1416.4 1068 70.6
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1414.4 1097 69.9
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1412.1 1100 70.5
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1410.2 1096 69.9
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1407.5 1068 70.6
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1406.7 1088 69.0
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1404.0 1097 69.9
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1400.2 1086 68.6
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1397.9 1085 69.0
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1392.9 1089 68.8
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1388.2 1105 68.2
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1387.5 1080 68.8
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1387.1 1092 67.3
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1386.7 1078 68.8
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1384.8 1073 68.6
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1384.8 1076 69.0
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1384.4 1082 68.5
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1384.0 1120 68.4
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1383.2 1091 69.1
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1383.2 1102 68.2
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1380.2 1079 68.5
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1377.1 1093 69.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1374.0 1124 66.8
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1373.6 1095 67.7
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1373.6 1082 67.8
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1372.8 1109 67.1
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1364.0 1086 66.0
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1362.4 1083 68.7
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1361.3 1084 67.3
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1358.2 1071 68.3
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1356.7 1072 68.3
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1353.6 1086 67.0
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1352.4 1091 66.6
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1349.7 1070 68.0
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1335.9 1108 65.9
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1332.4 1084 66.3
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1330.9 1095 65.8
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1320.4 1084 66.9
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1305.0 1088 66.5
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1303.9 1055 67.0
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1302.3 1082 65.4
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1298.1 1078 64.8
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1297.0 1088 65.6
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1295.4 1066 65.1
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1294.3 1075 65.0
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1293.5 1095 63.6
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1292.7 1077 64.6
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1291.6 1113 62.7
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1278.5 1085 63.8
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1277.7 1084 63.7
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1277.7 1068 64.7
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1276.2 1083 63.9
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1276.2 1087 63.8
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1268.1 1084 63.2
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1268.1 1084 63.1
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1264.6 1093 63.5
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1261.1 1086 63.4
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1257.3 1102 63.0
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1257.3 1090 62.8
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1253.8 1084 62.8
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1251.1 1084 62.0
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1246.9 1088 62.5
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1245.3 1248 57.5
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1242.6 1084 62.1
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1239.2 1086 61.8
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1230.3 1069 62.7
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1229.9 1085 61.7
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1216.1 1086 61.7
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1213.7 1067 62.1
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1211.4 924 69.5
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1209.1 924 69.4
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1154.4 979 66.7
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1136.3 1325 52.4
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1135.2 1073 58.5
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1132.1 1069 57.3
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1131.3 940 64.1
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1125.9 1068 59.0
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1106.7 1066 58.7
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1093.6 1068 58.5
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 9.7e-307 1057.0 911 65.2
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 3.3e-299 1031.9 998 59.6
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 4.4e-299 1031.6 932 63.9
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.3e-287 993.4 1049 56.1
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 7.7e-280 967.6 980 58.2
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 8.6e-271 937.6 842 63.7
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 7.8e-248 861.3 782 61.9
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 9.9e-243 844.3 635 68.7
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 4.9e-234 815.5 885 55.6
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.2e-232 810.8 692 63.9
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.9e-225 786.9 936 52.5
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 7.9e-224 781.6 1136 41.7
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.6e-222 775.4 1129 40.8
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.1e-221 773.5 1128 41.7
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.5e-219 767.3 1125 41.5
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 2.0e-219 766.9 1088 41.6
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.9e-218 763.1 736 59.6
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 6.0e-208 728.8 651 62.8
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 8.2e-205 718.4 889 51.3
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.4e-204 716.8 525 69.9
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.6e-192 677.6 1035 39.6
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 4.6e-192 676.0 523 67.1
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.2e-171 608.2 526 61.4
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 3.4e-142 510.4 415 65.5
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 5.8e-142 509.6 378 71.4
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 9.8e-142 508.8 377 71.9
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 5.6e-129 466.5 416 64.2
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 2.1e-112 411.4 228 87.3
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 6.2e-112 409.8 667 41.4
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.3e-98 365.5 317 60.6
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 4.8e-96 357.1 827 32.2
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.5e-94 352.1 324 61.4
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 5.8e-94 350.1 351 54.7
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.3e-88 332.4 186 83.3
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 4.1e-87 327.4 316 56.6
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 3.4e-78 297.7 232 70.3
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 3.2e-76 291.2 515 38.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 3.3e-73 281.2 1035 24.9
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.1e-68 266.2 195 66.2
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 2.5e-68 265.0 141 91.5
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.2e-67 262.7 188 72.3
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 4.7e-67 260.8 1215 22.8
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 8.2e-64 250.0 241 56.4
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.8e-63 248.8 141 87.2
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.1e-63 247.7 145 82.1
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 3.2e-60 238.0 256 52.3
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 8.5e-53 213.4 116 89.7
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 1.9e-52 212.2 118 86.4
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.2e-51 209.5 116 87.1
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.1e-51 207.2 542 32.5
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.0e-42 178.3 191 55.5
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 5.7e-41 174.1 119 71.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 4.5e-38 164.5 1149 21.4
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 7.8e-38 163.7 111 75.7
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 6.6e-37 160.6 115 75.7
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 6.6e-37 160.6 115 75.7
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 4.3e-36 157.9 82 91.5
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 4.3e-36 157.9 109 66.1
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.8e-35 155.2 83 86.7
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.0e-33 149.1 123 65.9
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 4.4e-33 147.9 83 81.9
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.7e-32 144.8 162 51.9
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 9.2e-31 140.2 87 87.4
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.6e-30 139.4 112 67.9
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 6.6e-29 134.0 153 48.4
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 1.1e-28 133.3 96 79.2
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.9e-28 132.5 117 58.1
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.5e-28 132.1 134 53.0
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.7e-24 119.4 112 58.9
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 2.2e-24 119.0 87 75.9
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.7e-24 118.2 88 78.4
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.0e-21 110.2 102 56.9
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 3.0e-21 108.6 85 63.5
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 3.9e-21 108.2 104 59.6
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 2.8e-19 102.1 91 64.8
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.4e-18 99.8 89 56.2
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 3.3e-12 78.6 80 57.5
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 5.8e-09 67.8 59 64.4
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 2.9e-08 65.5 45 68.9


User provided reference genes

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