Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01030478001 Vitis vinifera HOM05D006348 ORTHO05D008261 9.5e-52 206.5 97 100.0
Glyma.02G271100 Glycine max HOM05D006348 ORTHO05D008261 1.7e-48 195.7 97 90.7
Hma1.2p1_0895F.1_g233740 Hydrangea macrophylla HOM05D006348 ORTHO05D008261 2.2e-48 195.3 97 90.7
Manes.13G068300 Manihot esculenta HOM05D006348 ORTHO05D008261 2.9e-48 194.9 97 93.8
Gohir.D07G192700 Gossypium hirsutum HOM05D006348 ORTHO05D008261 4.9e-48 194.1 97 93.8
Gorai.001G215600 Gossypium raimondii HOM05D006348 ORTHO05D008261 4.9e-48 194.1 97 93.8
Ca_06123_v3 Cicer arietinum L. HOM05D006348 ORTHO05D008261 6.4e-48 193.7 97 90.7
Duzib138G1741 Durio zibethinus HOM05D006348 ORTHO05D008261 6.4e-48 193.7 97 92.8
Gohir.A07G186200 Gossypium hirsutum HOM05D006348 ORTHO05D008261 6.4e-48 193.7 97 93.8
CSS0003775 Camellia sinensis var. sinensis HOM05D006348 ORTHO05D008261 8.4e-48 193.4 97 91.8
CSS0037472 Camellia sinensis var. sinensis HOM05D006348 ORTHO05D008261 8.4e-48 193.4 97 91.8
VMungo0647G0907 Vigna mungo HOM05D006348 ORTHO05D008261 8.4e-48 193.4 97 89.7
Actinidia10810 Actinidia chinensis HOM05D006348 ORTHO05D008261 1.1e-47 193.0 97 91.8
Duzib211G0430 Durio zibethinus HOM05D006348 ORTHO05D008261 1.1e-47 193.0 97 92.8
Glyma.14G046100 Glycine max HOM05D006348 ORTHO05D008261 1.1e-47 193.0 94 92.6
Sabra14G0118200 Salix brachista HOM05D006348 ORTHO05D008261 1.1e-47 193.0 97 91.8
MD17G1101600 Malus domestica HOM05D006348 ORTHO05D008261 1.4e-47 192.6 97 89.7
CSS0029476 Camellia sinensis var. sinensis HOM05D006348 ORTHO05D008261 2.4e-47 191.8 97 89.7
TPR.G31828 Trifolium pratense HOM05D006348 ORTHO05D008261 2.4e-47 191.8 97 89.7
PGR042G0134 Punica granatum HOM05D006348 ORTHO05D008261 3.2e-47 191.4 97 90.7
Thecc.01G178500 Theobroma cacao HOM05D006348 ORTHO05D008261 4.1e-47 191.0 97 90.7
COL.COLO4_21837 Corchorus olitorius HOM05D006348 ORTHO05D008261 5.4e-47 190.7 97 92.8
Prupe.3G213300 Prunus persica HOM05D006348 ORTHO05D008261 5.4e-47 190.7 97 88.7
TWI18G0943 Tripterygium wilfordii HOM05D006348 ORTHO05D008261 5.4e-47 190.7 97 90.7
Dinv39735 Davidia involucrata HOM05D006348 ORTHO05D008261 7.1e-47 190.3 96 88.5
Medtr5g086350 Medicago truncatula HOM05D006348 ORTHO05D008261 7.1e-47 190.3 97 89.7
Psat2g024240 Pisum sativum HOM05D006348 ORTHO05D008261 7.1e-47 190.3 97 89.7
Potri.014G156300 Populus trichocarpa HOM05D006348 ORTHO05D008261 7.1e-47 190.3 97 89.7
Rhsim04G0052100 Rhododendron simsii HOM05D006348 ORTHO05D008261 9.2e-47 189.9 97 88.7
Lj8C128T10 Lonicera japonica HOM05D006348 ORTHO05D008261 1.2e-46 189.5 97 88.7
arahy.Tifrunner.gnm1.ann1.ZG31ZK Arachis hypogaea HOM05D006348 ORTHO05D008261 2.1e-46 188.7 97 85.6
Migut.H01230 Erythranthe guttata HOM05D006348 ORTHO05D008261 2.7e-46 188.3 97 86.6
LjContig00564g0027462 Lotus japonicus HOM05D006348 ORTHO05D008261 2.7e-46 188.3 97 84.5
MD09G1071000 Malus domestica HOM05D006348 ORTHO05D008261 2.7e-46 188.3 97 87.6
Phvul.008G210900 Phaseolus vulgaris HOM05D006348 ORTHO05D008261 2.7e-46 188.3 97 85.6
QL08p031358 Quercus lobata HOM05D006348 ORTHO05D008261 2.7e-46 188.3 96 86.5
TWI36G0479 Tripterygium wilfordii HOM05D006348 ORTHO05D008261 2.7e-46 188.3 97 90.7
vmacro09350 Vaccinium macrocarpon HOM05D006348 ORTHO05D008261 2.7e-46 188.3 97 88.7
CiPaw.03G157500 Carya illinoinensis HOM05D006348 ORTHO05D008261 3.5e-46 188.0 97 87.6
Cfa014336 Carpinus fangiana HOM05D006348 ORTHO05D008261 6.0e-46 187.2 97 88.7
Lalb_Chr17g0347351 Lupinus albus HOM05D006348 ORTHO05D008261 1.0e-45 186.4 97 85.6
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 1.3e-45 186.0 97 85.6
Oeu036738.2 Olea europaea HOM05D006348 ORTHO05D008261 1.3e-45 186.0 97 85.6
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 1.7e-45 185.7 97 85.6
Cpa.g.sc87.110 Carica papaya HOM05D006348 ORTHO05D008261 3.9e-45 184.5 97 87.6
DCAR_021152 Daucus carota HOM05D006348 ORTHO05D008261 3.9e-45 184.5 97 86.6
arahy.Tifrunner.gnm1.ann1.156AYJ Arachis hypogaea HOM05D006348 ORTHO05D008261 6.6e-45 183.7 96 83.3
CANSAT64G0250 Cannabis sativa HOM05D006348 ORTHO05D008261 6.6e-45 183.7 97 84.5
Nn1g07240 Nelumbo nucifera HOM05D006348 ORTHO05D008261 6.6e-45 183.7 97 85.6
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 6.6e-45 183.7 97 84.5
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 8.6e-45 183.3 97 84.5
Sc12g0002190 Simmondsia chinensis HOM05D006348 ORTHO05D008261 8.6e-45 183.3 97 85.6
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 1.1e-44 183.0 97 87.6
MSTRG.14145 Avicennia marina HOM05D006348 ORTHO05D008261 2.5e-44 181.8 97 84.5
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 3.3e-44 181.4 96 86.5
Ah.12g055590 Amaranthus hybridus HOM05D006348 ORTHO05D008261 4.3e-44 181.0 97 82.5
Ciclev10014751m.g Citrus clementina HOM05D006348 ORTHO05D008261 5.6e-44 180.6 97 85.6
Cc05_g03430 Coffea canephora HOM05D006348 ORTHO05D008261 5.6e-44 180.6 97 82.5
AUR62007368 Chenopodium quinoa HOM05D006348 ORTHO05D008261 9.6e-44 179.9 97 82.5
AUR62018621 Chenopodium quinoa HOM05D006348 ORTHO05D008261 9.6e-44 179.9 97 82.5
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 9.6e-44 179.9 96 86.5
HanXRQChr04g0126961 Helianthus annuus HOM05D006348 ORTHO05D008261 9.6e-44 179.9 97 84.5
Hund11167 Selenicereus undatus HOM05D006348 ORTHO05D008261 1.2e-43 179.5 97 81.4
CsaV3_7G003400 Cucumis sativus L. HOM05D006348 ORTHO05D008261 1.6e-43 179.1 96 85.4
unitig_26.g9928 Utricularia gibba HOM05D006348 ORTHO05D008261 1.6e-43 179.1 97 81.4
Peaxi162Scf00921g00016 Petunia axillaris HOM05D006348 ORTHO05D008261 2.8e-43 178.3 96 83.3
ECA236G2571 Erigeron canadensis HOM05D006348 ORTHO05D008261 4.7e-43 177.6 96 84.4
Eucgr.A01106 Eucalyptus grandis HOM05D006348 ORTHO05D008261 1.4e-42 176.0 97 80.4
THA.LOC104820219 Tarenaya hassleriana HOM05D006348 ORTHO05D008261 1.4e-42 176.0 93 86.0
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 2.4e-42 175.3 97 80.4
Aa31LG9G2030 Aethionema arabicum HOM05D006348 ORTHO05D008261 5.2e-42 174.1 96 82.3
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 5.2e-42 174.1 97 80.4
Os01g0534800 Oryza sativa ssp. japonica HOM05D006348 ORTHO05D008261 6.9e-42 173.7 97 81.4
BcaB04g18295 Brassica carinata HOM05D006348 ORTHO05D008261 9.0e-42 173.3 96 81.2
Thhalv10024806m.g Eutrema salsugineum HOM05D006348 ORTHO05D008261 1.2e-41 172.9 96 81.2
Lsat_1_v5_gn_7_93060 Lactuca sativa HOM05D006348 ORTHO05D008261 1.2e-41 172.9 97 80.4
A08p11740 Brassica napus HOM05D006348 ORTHO05D008261 1.5e-41 172.6 96 81.2
BraA08t33166Z Brassica rapa HOM05D006348 ORTHO05D008261 1.5e-41 172.6 96 81.2
Carub.0007s2651 Capsella rubella HOM05D006348 ORTHO05D008261 2.0e-41 172.2 96 80.2
Zm00001eb341970 Zea mays HOM05D006348 ORTHO05D008261 2.0e-41 172.2 97 80.4
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 4.4e-41 171.0 96 79.2
BcaC07g37884 Brassica carinata HOM05D006348 ORTHO05D008261 4.4e-41 171.0 96 79.2
Sp7g13620 Schrenkiella parvula HOM05D006348 ORTHO05D008261 4.4e-41 171.0 96 79.2
TAR626G1526 Trochodendron aralioides HOM05D006348 ORTHO05D008261 4.4e-41 171.0 97 82.5
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 5.8e-41 170.6 96 79.2
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 1.7e-40 169.1 96 79.2
TAR624G0809 Trochodendron aralioides HOM05D006348 ORTHO05D008261 2.2e-40 168.7 97 81.4
Nitab4.5_0004215g0010 Nicotiana tabacum HOM05D006348 ORTHO05D008261 3.8e-40 167.9 96 80.2
Nitab4.5_0004358g0010 Nicotiana tabacum HOM05D006348 ORTHO05D008261 3.8e-40 167.9 96 80.2
FvH4_6g42660 Fragaria vesca HOM05D006348 ORTHO05D008261 8.4e-40 166.8 97 78.4
FAN02G0418 Fragaria x ananassa HOM05D006348 ORTHO05D008261 8.4e-40 166.8 97 78.4
FAN14G5544 Fragaria x ananassa HOM05D006348 ORTHO05D008261 8.4e-40 166.8 97 78.4
SEGI_24298 Sequoiadendron giganteum HOM05D006348 ORTHO05D008261 1.4e-39 166.0 95 75.8
HPP92_008160 Vanilla planifolia HOM05D006348 ORTHO05D008261 1.9e-39 165.6 97 76.3
Solyc07g048120.3 Solanum lycopersicum HOM05D006348 ORTHO05D008261 2.4e-39 165.2 96 76.0
Sopen07g024550 Solanum pennellii HOM05D006348 ORTHO05D008261 2.4e-39 165.2 96 76.0
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 3.2e-39 164.9 97 77.3
MBI10_g09181_MAGBIO Magnolia biondii HOM05D006348 ORTHO05D008261 7.1e-39 163.7 97 77.3
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 7.1e-39 163.7 96 75.0
FAN09G4439 Fragaria x ananassa HOM05D006348 ORTHO05D008261 9.3e-39 163.3 97 77.3
PSO675G6007 Papaver somniferum HOM05D006348 ORTHO05D008261 9.3e-39 163.3 97 75.3
CAN.G1911.1 Capsicum annuum HOM05D006348 ORTHO05D008261 1.2e-38 162.9 96 76.0
Haze_12795 Corylus avellana HOM05D006348 ORTHO05D008261 2.7e-38 161.8 97 79.4
Sed0018470 Sechium edule HOM05D006348 ORTHO05D008261 6.0e-38 160.6 96 76.0
SHI24912 Sapria himalayana HOM05D006348 ORTHO05D008261 1.3e-37 159.5 93 75.3
PSO541G1617 Papaver somniferum HOM05D006348 ORTHO05D008261 6.6e-37 157.1 97 74.2
RcHm_v2.0_Chr2g0158561 Rosa chinensis HOM05D006348 ORTHO05D008261 2.5e-36 155.2 97 74.2
Mapoly0005s0132 Marchantia polymorpha HOM05D006348 ORTHO05D008261 6.2e-35 150.6 92 71.7
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 1.5e-33 146.0 93 69.9
BcaC07g37885 Brassica carinata HOM05D006348 ORTHO05D008261 1.1e-26 123.2 78 69.2
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 4.5e-25 117.9 93 58.1
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 2.6e-09 65.5 91 33.0
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.5e-09 64.7 86 33.7
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 4.5e-09 64.7 86 33.7
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 5.9e-09 64.3 90 32.2
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.0e-08 63.5 86 32.6
BolC1t02695H Brassica oleracea HOM05D006348 ORTHO05D008261 1.3e-08 63.2 51 56.9
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.7e-08 62.8 90 30.0
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 2.9e-08 62.0 87 32.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 3.8e-08 61.6 86 32.6
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 3.8e-08 61.6 86 33.7
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 5.0e-08 61.2 86 32.6
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.0e-08 61.2 90 28.9
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 6.5e-08 60.8 85 32.9
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 6.5e-08 60.8 86 32.6
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 6.5e-08 60.8 86 34.9
C01p27590 Brassica napus HOM05D006348 ORTHO05D008261 1.1e-07 60.1 51 52.9
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 1.1e-07 60.1 86 32.6
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 1.4e-07 59.7 93 32.3
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.9e-07 59.3 86 31.4
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 2.5e-07 58.9 90 31.1
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.5e-07 58.9 90 33.3
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 3.2e-07 58.5 86 30.2
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 3.2e-07 58.5 87 31.0
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.5e-07 57.8 86 32.6
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.5e-07 57.8 82 26.8
BraA01t02132Z Brassica rapa HOM05D006348 ORTHO05D008261 7.2e-07 57.4 51 52.9
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.2e-07 57.4 85 32.9
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.2e-07 57.4 85 32.9
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.2e-07 57.4 85 32.9
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 7.2e-07 57.4 78 32.1
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 9.3e-07 57.0 88 31.8
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 9.3e-07 57.0 88 31.8
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 2.1e-06 55.8 78 30.8
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 2.7e-06 55.5 86 31.4
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 3.6e-06 55.1 78 33.3
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 6.1e-06 54.3 87 31.0
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 6.1e-06 54.3 87 32.2


User provided reference genes

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