Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 3.0e-154 548.5 286 100.0
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 6.6e-85 318.2 258 67.4
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 3.3e-84 315.8 250 68.8
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.8e-83 312.8 246 65.9
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.1e-82 310.8 246 65.9
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 2.4e-82 309.7 220 71.4
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 6.9e-82 308.1 246 65.4
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 3.8e-80 302.4 250 64.4
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 3.2e-79 299.3 212 73.6
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 7.1e-79 298.1 245 66.5
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 1.7e-77 293.5 234 66.2
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 5.1e-77 292.0 260 63.1
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 4.8e-75 285.4 213 70.9
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 6.2e-75 285.0 214 67.3
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 1.4e-74 283.9 259 62.2
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 1.8e-74 283.5 222 66.7
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 1.8e-74 283.5 208 68.8
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 3.1e-74 282.7 217 66.8
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 3.1e-74 282.7 214 68.2
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 5.3e-74 282.0 251 62.2
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 9.0e-74 281.2 206 68.9
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 1.5e-73 280.4 233 62.7
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 9.9e-73 277.7 210 70.0
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 1.3e-72 277.3 290 57.6
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 1.7e-72 276.9 213 66.7
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 3.8e-72 275.8 211 65.4
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 3.8e-72 275.8 211 65.4
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 8.4e-72 274.6 233 60.9
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 4.2e-71 272.3 233 60.9
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 5.5e-71 271.9 216 64.8
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 7.1e-71 271.6 247 61.5
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.1e-71 271.6 227 65.2
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 9.3e-71 271.2 211 68.2
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 3.5e-70 269.2 218 63.8
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 6.0e-70 268.5 207 66.7
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 7.9e-70 268.1 228 59.2
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 1.0e-69 267.7 239 61.5
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 3.9e-69 265.8 213 63.8
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 6.7e-69 265.0 259 58.3
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 8.7e-69 264.6 217 63.1
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 8.7e-69 264.6 227 62.6
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.5e-68 263.8 226 63.3
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 1.5e-68 263.8 196 69.4
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 7.4e-68 261.5 239 58.6
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 9.6e-68 261.2 244 58.2
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 1.6e-67 260.4 244 57.8
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 2.1e-67 260.0 238 56.3
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 2.8e-67 259.6 212 65.1
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 3.7e-67 259.2 249 57.4
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 6.2e-67 258.5 214 60.3
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 8.1e-67 258.1 230 60.9
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 1.1e-66 257.7 214 62.1
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 4.0e-66 255.8 238 56.7
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 5.3e-66 255.4 251 53.8
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 2.0e-65 253.4 230 60.4
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 2.6e-65 253.1 212 62.7
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 5.8e-65 251.9 214 60.3
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.0e-64 251.1 236 56.4
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 4.9e-64 248.8 221 60.2
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 6.5e-64 248.4 212 59.4
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 1.9e-63 246.9 219 61.2
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 3.2e-63 246.1 241 52.3
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 1.2e-62 244.2 244 56.1
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 1.6e-62 243.8 256 54.7
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 3.5e-62 242.7 211 57.8
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 6.0e-62 241.9 211 56.9
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 3.9e-61 239.2 215 57.2
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 1.5e-60 237.3 210 56.7
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 4.3e-60 235.7 211 56.9
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 5.7e-60 235.3 211 56.9
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 5.7e-60 235.3 210 55.7
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 5.7e-60 235.3 210 55.7
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 1.3e-59 234.2 210 55.2
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 2.8e-59 233.0 210 54.8
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 2.8e-59 233.0 210 54.8
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 1.4e-58 230.7 167 67.7
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 4.5e-57 225.7 242 52.1
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 5.9e-57 225.3 210 57.1
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 7.6e-57 224.9 211 55.5
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.0e-56 224.6 210 57.1
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 1.9e-55 220.3 339 41.6
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 1.6e-54 217.2 215 53.0
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 4.3e-52 209.1 213 52.1
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 1.0e-48 198.0 211 50.2
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 1.7e-48 197.2 181 55.8
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 4.2e-47 192.6 173 60.7
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 1.2e-46 191.0 204 49.0
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 7.9e-46 188.3 402 33.8
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 1.4e-45 187.6 241 45.6
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 6.7e-45 185.3 209 50.2
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 6.7e-45 185.3 232 42.2
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 2.6e-41 173.3 194 56.2
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 3.4e-41 172.9 207 43.5
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 1.4e-39 167.5 182 54.9
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.9e-39 167.2 148 62.2
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 2.5e-39 166.8 218 42.7
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 1.2e-38 164.5 147 61.2
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 1.4e-37 161.0 191 47.6
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 2.6e-36 156.8 233 44.2
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 9.7e-36 154.8 176 47.7
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 1.1e-31 141.4 156 48.7
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.5e-28 131.0 95 65.3
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 5.3e-26 122.5 117 56.4
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 1.3e-19 101.3 204 30.9
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 1.6e-09 67.8 148 33.8
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 2.7e-09 67.0 50 62.0
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 4.5e-09 66.2 57 52.6
BolC8t52289H Brassica oleracea HOM05D002462 ORTHO05D002893 5.0e-08 62.8 124 33.1
Pp3c22_12710 Physcomitrium patens HOM05D001916 ORTHO05D003272 1.9e-07 60.8 123 28.5
AL1G23580 Arabidopsis lyrata HOM05D002462 ORTHO05D002893 3.3e-07 60.1 107 30.8
AL1G23570 Arabidopsis lyrata HOM05D002462 ORTHO05D002893 9.5e-07 58.5 88 35.2
BcaC07g41712 Brassica carinata HOM05D002462 ORTHO05D002893 1.2e-06 58.2 127 34.6
A09p63960 Brassica napus HOM05D002462 ORTHO05D002893 1.2e-06 58.2 126 31.7
C08p47480 Brassica napus HOM05D002462 ORTHO05D002893 1.2e-06 58.2 127 34.6
Pp3c7_11180 Physcomitrium patens HOM05D000115 ORTHO05D005317 1.6e-06 57.8 100 33.0
HPP92_021772 Vanilla planifolia HOM05D000115 ORTHO05D005317 1.6e-06 57.8 117 31.6
BraA09t41742Z Brassica rapa HOM05D002462 ORTHO05D002893 2.1e-06 57.4 126 31.7
QL93p0107_0053 Quercus lobata HOM05D002462 ORTHO05D007680 2.1e-06 57.4 112 35.7
MBI06_g33537_MAGBIO Magnolia biondii HOM05D001916 ORTHO05D003272 2.8e-06 57.0 122 30.3
Zm00001eb283980 Zea mays HOM05D000115 ORTHO05D005317 3.6e-06 56.6 123 30.9
FAN17G1940 Fragaria x ananassa HOM05D006451 ORTHO05D007680 6.1e-06 55.8 100 31.0
FAN22G0671 Fragaria x ananassa HOM05D006451 ORTHO05D007680 6.1e-06 55.8 100 31.0
A05p03220 Brassica napus HOM05D000115 ORTHO05D005317 8.0e-06 55.5 100 30.0
BraA05t19312Z Brassica rapa HOM05D000115 ORTHO05D005317 8.0e-06 55.5 100 30.0
HPP92_009818 Vanilla planifolia HOM05D001916 ORTHO05D003272 8.0e-06 55.5 121 30.6


User provided reference genes

Program Settings