Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 8.0e-183 643.7 331 100.0
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 6.0e-154 547.7 318 86.5
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 1.1e-152 543.5 316 85.4
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 5.6e-152 541.2 310 85.2
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 1.2e-151 540.0 318 84.3
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 2.8e-151 538.9 319 83.7
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 2.8e-151 538.9 323 83.0
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 3.6e-151 538.5 330 83.9
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 6.2e-151 537.7 311 85.9
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 8.1e-151 537.3 317 82.0
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 1.4e-150 536.6 317 83.3
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.8e-150 536.2 308 84.7
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 5.2e-150 534.6 303 86.1
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 5.2e-150 534.6 318 82.1
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 8.9e-150 533.9 331 81.3
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 8.9e-150 533.9 321 82.6
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.6e-149 532.3 332 81.3
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 4.4e-149 531.6 305 84.9
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 4.4e-149 531.6 330 81.8
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 5.8e-149 531.2 311 84.9
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 1.3e-148 530.0 316 84.5
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.3e-148 530.0 315 82.2
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.7e-148 529.6 313 84.7
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 2.2e-148 529.3 315 82.9
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 2.9e-148 528.9 317 83.6
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.9e-148 528.9 313 82.7
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 6.4e-148 527.7 332 81.0
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.9e-147 526.2 315 82.2
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 4.1e-147 525.0 327 79.5
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 5.4e-147 524.6 316 80.4
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 9.2e-147 523.9 326 80.7
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 1.6e-146 523.1 312 84.0
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 2.1e-146 522.7 327 79.5
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 2.7e-146 522.3 327 79.5
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 3.5e-146 521.9 313 81.8
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 3.5e-146 521.9 314 79.3
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 1.0e-145 520.4 305 81.0
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.7e-145 519.6 309 82.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.0e-145 518.8 322 79.5
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 1.1e-144 516.9 302 84.1
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 1.1e-144 516.9 317 79.8
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.1e-144 516.9 314 79.0
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 1.5e-144 516.5 366 72.7
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.5e-144 515.8 318 79.9
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 5.6e-144 514.6 316 80.7
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 1.2e-143 513.5 317 80.1
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.6e-143 511.9 318 79.6
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.4e-142 510.0 314 79.0
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.1e-142 508.8 316 79.4
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 6.8e-142 507.7 330 76.4
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 6.8e-142 507.7 299 84.3
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 2.0e-141 506.1 315 79.7
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 3.4e-141 505.4 328 76.5
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 4.4e-141 505.0 352 72.7
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.8e-141 504.6 311 79.7
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 7.6e-141 504.2 318 78.6
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 6.4e-140 501.1 318 78.9
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 8.4e-140 500.7 318 77.7
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 1.1e-139 500.4 313 78.9
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 1.9e-139 499.6 316 76.3
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 1.0e-137 493.8 310 78.4
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.3e-137 493.4 295 80.3
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 2.3e-137 492.7 316 76.6
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 3.0e-137 492.3 310 77.4
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 5.1e-137 491.5 322 74.8
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.5e-136 490.0 342 73.4
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.5e-136 490.0 342 73.4
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.5e-136 490.0 342 73.4
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 1.5e-136 490.0 317 75.4
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 2.5e-136 489.2 317 75.4
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 7.3e-136 487.6 329 74.5
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 7.3e-136 487.6 329 74.5
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 7.3e-136 487.6 329 74.5
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-135 486.9 333 74.2
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.2e-135 486.9 325 74.8
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 2.8e-135 485.7 343 72.9
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 2.8e-135 485.7 343 72.9
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 3.6e-135 485.3 314 76.8
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 8.9e-134 480.7 316 75.3
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 2.6e-133 479.2 298 77.5
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.4e-133 478.8 309 78.3
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 5.8e-133 478.0 302 75.8
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 7.6e-133 477.6 316 75.6
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 8.4e-132 474.2 322 74.8
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 8.4e-132 474.2 333 73.0
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 1.1e-131 473.8 324 73.5
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.1e-131 473.8 311 75.2
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.4e-131 473.4 308 76.3
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 2.4e-131 472.6 311 75.2
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 3.2e-131 472.2 311 75.2
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 5.4e-131 471.5 302 77.8
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 4.6e-130 468.4 330 72.1
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 4.6e-130 468.4 270 85.6
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 6.0e-130 468.0 316 76.6
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.0e-129 467.2 305 76.1
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 1.3e-129 466.8 331 72.8
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 2.5e-128 462.6 334 71.0
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 1.3e-127 460.3 330 71.8
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.3e-127 460.3 330 71.8
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 1.6e-127 459.9 337 70.6
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 8.1e-127 457.6 326 73.0
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 1.1e-126 457.2 357 67.2
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.4e-126 456.1 335 70.7
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.4e-125 452.2 315 72.1
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.4e-125 452.2 335 70.1
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.7e-121 439.9 271 80.4
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.3e-119 433.7 302 70.9
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.8e-118 429.9 318 70.1
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.2e-114 417.2 310 69.0
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.3e-110 401.7 230 85.2
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 7.6e-109 397.9 231 85.3
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 1.6e-106 390.2 257 75.1
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 6.0e-106 388.3 318 59.7
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 1.8e-105 386.7 284 64.4
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 6.3e-103 378.3 309 65.0
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 8.2e-103 377.9 233 79.4
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.1e-102 377.5 271 74.2
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.1e-102 377.5 331 62.5
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.4e-102 377.1 325 56.6
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 2.0e-101 373.2 310 58.7
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 7.9e-98 361.3 332 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 1.8e-97 360.1 323 55.4
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 1.5e-96 357.1 233 75.5
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 1.1e-88 330.9 276 60.5
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.4e-85 319.3 242 68.6
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 3.8e-76 289.3 332 45.8
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 8.0e-74 281.6 149 89.3
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 1.0e-73 281.2 331 45.9
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 4.0e-73 279.3 319 51.4
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.5e-68 261.5 166 78.3
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.1e-54 218.0 239 47.7
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.4e-49 201.1 158 64.6
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 6.4e-47 192.2 112 81.2
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 7.8e-45 185.3 291 37.8
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 8.0e-42 175.3 368 32.3
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.9e-38 164.1 194 47.9
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.9e-36 156.4 94 78.7
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.1e-35 154.8 94 77.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.1e-35 154.8 94 77.7
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 2.3e-33 147.1 97 77.3
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 6.8e-33 145.6 95 77.9
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.2e-32 144.8 128 62.5
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.2e-32 144.8 111 67.6
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.3e-19 99.0 73 69.9
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 3.6e-18 96.7 66 69.7
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 8.9e-17 92.0 53 81.1
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.4e-16 89.7 80 61.2
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 3.2e-14 83.6 48 81.2
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 3.2e-14 83.6 48 81.2
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.4e-14 82.8 57 73.7
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 2.5e-11 73.9 49 69.4
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.5e-08 64.7 84 44.0
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.1e-06 55.8 31 77.4
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.1e-06 55.8 31 77.4
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.1e-06 55.8 31 77.4
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.1e-06 55.8 31 77.4
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.1e-06 55.8 31 77.4


User provided reference genes

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