Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.6e-80 302.8 160 100.0
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.0e-67 259.2 157 86.6
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.8e-63 246.1 157 82.8
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 4.0e-63 245.0 157 81.5
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 2.6e-62 242.3 157 82.8
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 7.5e-62 240.7 159 78.6
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.9e-61 238.8 157 82.8
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 3.7e-61 238.4 157 82.2
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 4.6e-59 231.5 159 79.2
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.6e-59 231.5 157 79.0
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.6e-59 231.5 157 79.0
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 2.3e-58 229.2 156 77.6
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.9e-58 228.4 157 78.3
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.9e-57 226.1 153 75.8
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 3.6e-56 221.9 155 76.1
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 3.1e-55 218.8 155 74.8
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 3.1e-55 218.8 153 73.2
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 3.1e-55 218.8 155 74.8
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 4.0e-55 218.4 155 75.5
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 5.2e-55 218.0 153 73.2
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 5.2e-55 218.0 155 74.8
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 5.2e-55 218.0 157 70.7
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.2e-54 216.9 154 75.3
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.5e-54 216.5 155 74.2
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.5e-54 216.5 155 73.5
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.0e-54 216.1 153 73.9
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 4.4e-54 214.9 155 73.5
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 7.5e-54 214.2 157 76.4
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 9.9e-54 213.8 156 73.1
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.3e-53 213.4 155 73.5
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.3e-53 213.4 157 77.1
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.7e-53 213.0 153 73.2
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.7e-53 213.0 155 76.8
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.7e-53 213.0 155 73.5
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 2.2e-53 212.6 154 74.0
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.9e-53 212.2 153 74.5
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 2.9e-53 212.2 152 75.7
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 2.9e-53 212.2 155 72.9
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.9e-53 212.2 155 72.9
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 3.7e-53 211.8 155 72.9
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 4.9e-53 211.5 148 77.0
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 4.9e-53 211.5 157 76.4
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 6.4e-53 211.1 155 71.0
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 8.3e-53 210.7 155 72.3
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.4e-52 209.9 155 72.3
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.4e-52 209.9 153 72.5
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.9e-52 209.5 155 71.6
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.4e-52 209.1 158 75.9
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 2.4e-52 209.1 155 73.5
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 2.4e-52 209.1 155 69.7
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.4e-52 209.1 153 72.5
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 3.2e-52 208.8 154 72.7
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 5.4e-52 208.0 152 73.7
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 5.4e-52 208.0 155 71.0
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.6e-51 206.5 154 72.1
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.1e-51 206.1 152 72.4
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.7e-51 205.7 157 70.1
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 3.5e-51 205.3 153 73.2
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 4.6e-51 204.9 153 73.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 4.6e-51 204.9 145 77.2
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.0e-50 203.8 154 72.7
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.3e-50 202.6 151 69.5
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 2.3e-50 202.6 154 74.0
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 5.1e-50 201.4 156 71.8
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 8.6e-50 200.7 156 71.8
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.5e-49 199.9 154 71.4
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 4.3e-49 198.4 151 70.2
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.3e-49 198.4 162 67.3
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 5.6e-49 198.0 159 71.1
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 5.6e-49 198.0 155 69.0
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 7.3e-49 197.6 157 71.3
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 2.1e-48 196.1 156 68.6
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.1e-48 196.1 153 71.2
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 3.6e-48 195.3 154 71.4
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 3.6e-48 195.3 143 73.4
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 4.7e-48 194.9 144 72.2
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 6.2e-48 194.5 156 67.9
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 6.2e-48 194.5 155 70.3
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 1.4e-47 193.4 155 67.7
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.1e-47 192.2 145 71.0
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.1e-47 192.2 145 71.0
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.8e-47 191.0 153 70.6
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 8.9e-47 190.7 154 69.5
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-46 190.3 153 69.9
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.2e-46 190.3 153 69.9
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.8e-45 185.3 168 65.5
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.4e-44 183.3 138 71.0
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 1.9e-44 183.0 141 69.5
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.9e-44 183.0 151 69.5
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 3.2e-44 182.2 183 59.6
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.2e-43 180.3 154 66.9
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 2.1e-43 179.5 200 56.0
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 2.7e-43 179.1 153 68.0
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 3.5e-43 178.7 218 50.5
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.0e-42 175.6 125 74.4
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.0e-42 175.6 153 65.4
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.5e-41 173.3 153 64.7
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.5e-41 173.3 153 64.7
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.5e-41 173.3 153 64.7
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.3e-41 172.2 151 64.9
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.3e-41 172.2 153 61.4
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.3e-41 171.8 153 64.1
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 5.6e-41 171.4 153 60.1
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 5.6e-41 171.4 125 73.6
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 9.6e-41 170.6 119 77.3
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.2e-40 170.2 153 62.1
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.2e-40 170.2 153 62.1
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.6e-40 169.9 153 59.5
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.6e-40 168.7 153 66.0
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 8.1e-40 167.5 153 62.1
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 8.1e-40 167.5 153 62.1
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 8.1e-40 167.5 153 62.1
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 8.1e-40 167.5 153 60.8
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.1e-39 167.2 154 58.4
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 1.4e-39 166.8 154 61.7
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.4e-39 166.8 153 66.0
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 1.8e-39 166.4 153 65.4
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 5.3e-39 164.9 158 60.8
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.2e-38 163.7 130 72.3
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.5e-38 163.3 127 68.5
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 2.0e-38 162.9 153 66.0
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.0e-38 162.9 157 59.9
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.6e-38 162.5 153 64.7
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 3.4e-38 162.2 112 74.1
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 9.9e-38 160.6 129 70.5
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.3e-37 160.2 180 53.3
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.7e-37 159.8 144 61.8
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.7e-37 159.8 151 58.9
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 4.9e-37 158.3 160 60.6
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 8.4e-37 157.5 159 59.7
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 2.4e-36 156.0 153 62.7
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 7.1e-36 154.5 267 41.9
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.2e-35 153.7 153 58.8
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-35 152.5 155 59.4
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 6.0e-35 151.4 151 57.0
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.0e-34 150.6 119 69.7
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.0e-34 150.6 172 54.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.0e-34 149.1 154 59.7
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 6.6e-34 147.9 159 57.9
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 8.7e-34 147.5 156 56.4
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.5e-33 146.7 143 58.0
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 2.5e-33 146.0 150 58.0
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 4.3e-33 145.2 153 56.9
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 4.3e-33 145.2 98 75.5
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.6e-32 143.3 163 54.6
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.1e-32 142.9 157 53.5
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 4.8e-32 141.7 168 52.4
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.1e-31 140.6 139 59.7
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 1.1e-31 140.6 98 72.4
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 1.4e-31 140.2 94 75.5
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.4e-31 139.4 171 52.0
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.3e-31 138.3 89 80.9
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.5e-30 136.7 93 78.5
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.9e-29 132.5 92 76.1
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 6.4e-29 131.3 90 76.7
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 8.4e-29 131.0 116 63.8
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 4.2e-28 128.6 91 75.8
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.1e-27 126.3 84 76.2
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 2.7e-27 125.9 175 48.6
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.6e-27 125.2 94 72.3
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.3e-26 123.6 91 70.3
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.5e-25 120.2 153 51.6
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.5e-25 119.4 153 50.3
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 7.9e-19 97.8 89 64.0
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 3.9e-18 95.5 75 62.7
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.3e-17 92.4 90 61.1
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.3e-17 92.0 90 61.1
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 9.6e-17 90.9 86 61.6
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.6e-17 90.9 89 58.4
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 5.3e-15 85.1 61 68.9
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.2e-13 79.7 103 52.4
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 2.5e-12 76.3 83 44.6
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.6e-11 72.0 64 57.8
ATR0347G001 Amborella trichopoda HOM05D004104 ORTHO05D004755 7.4e-09 64.7 65 56.9
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 3.7e-08 62.4 41 75.6
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 6.3e-08 61.6 44 65.9
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.1e-07 59.3 79 44.3
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 7.7e-06 54.7 62 54.8


User provided reference genes

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